View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18109_low_2 (Length: 586)
Name: NF18109_low_2
Description: NF18109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18109_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 45 - 530
Target Start/End: Complemental strand, 9552270 - 9551776
Alignment:
| Q |
45 |
tattcattatacattcaaaaaccaagataaagatttgacctacgaataacatta-----------aatctactagttggtcattggatacttattgactt |
133 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
9552270 |
tatttattatacattcagaaaccaagataaagatttgacctacgaataacattactcatggtctaaatctactagttggtcattggatacttattgaatt |
9552171 |
T |
|
| Q |
134 |
agagtcattaacttcataatgacacccctttgtcaacaaaacgtacttgactgaccaaaaccaactgcaaacagaga--aaacttctcacaaattttcaa |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
9552170 |
agagtcattaacttcataatgacacccctttgtcaacaaaacgtacttgactgaccaaaaccaactgcaaacacagacaaaacttctcacaaattttcaa |
9552071 |
T |
|
| Q |
232 |
accttaaaaagtaggacccacatccactcacatgaataacttttccctctcaacttttttcacaatttgcattgcaaacacatacacattcattctccac |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
9552070 |
accttaaaaagtaggacccacatccactcacatgaataacttttccctctcaacttttttcacaaattgcattgcaaaca--tacacattcattctccac |
9551973 |
T |
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| Q |
332 |
tcataatatctctatccgtttccttcccaccaaaccaaacttccaaaaatt-attaaaattactttttgctctctcaattttcatctttaccaatacccg |
430 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | ||||||| |
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| T |
9551972 |
tcata---tctctatccgtttccttcccaccaaaccaaacttccaaaaatttattaaaattactttttgttctctcaattttcatctttatcgatacccg |
9551876 |
T |
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| Q |
431 |
tgactgtatgcgatttcagttacaatcatctgtcgctttcttactcttttccgagaactttcctttgcatattcatacactcttttttcatttcacacac |
530 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9551875 |
tgactgtatgcgatttcagttactatcatctgtcgctttcttactcttttccgagaactttcctttgcatattcatacactcttttttcatttcacacac |
9551776 |
T |
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