View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18109_low_26 (Length: 210)

Name: NF18109_low_26
Description: NF18109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18109_low_26
NF18109_low_26
[»] chr3 (3 HSPs)
chr3 (14-191)||(24595044-24595221)
chr3 (14-185)||(51308631-51308803)
chr3 (17-84)||(20871255-20871322)
[»] chr4 (3 HSPs)
chr4 (14-191)||(55849578-55849755)
chr4 (31-79)||(15040083-15040130)
chr4 (31-79)||(15114294-15114341)
[»] chr8 (5 HSPs)
chr8 (14-99)||(4678002-4678087)
chr8 (26-93)||(19472664-19472731)
chr8 (26-93)||(19543589-19543656)
chr8 (26-93)||(19589040-19589107)
chr8 (26-86)||(3785972-3786032)
[»] chr1 (3 HSPs)
chr1 (14-84)||(20225649-20225719)
chr1 (26-100)||(12685012-12685086)
chr1 (27-99)||(16385467-16385540)
[»] chr7 (1 HSPs)
chr7 (26-99)||(26389086-26389160)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 24595221 - 24595044
Alignment:
Q  14 attattcttaatagcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacagcaaacaaagaaataaagtgcaaagaa 113  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||    
T  24595221 attattcttaatagcctccctcaaactcaaggtaagataactcttagcttgagtttgaattacaaagctaacagcaaacaaagaaataaagtgcagaaaa 24595122  T
Q  114 atatgacaagttgaggtgcagagctcctagaagtcgttgaccaaacttttgggtcctcacaagcttcctacagtgtct 191  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24595121 atatgacaagttgaggtgcatagctcctagaagtcgttgaccaaacttttgggtcctcacaagcttcctacagtgtct 24595044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 51308803 - 51308631
Alignment:
Q  14 attattcttaatagcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagc-taacagcaaaca-aagaaataaagtgcaaag 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| |||||||||||| ||||||||||||||| |     
T  51308803 attattcttaatagcctccctcaaactcaaggtaagagaactcttaacttgagtttgaactacaaagcttaacagcaaacagaagaaataaagtgcagaa 51308704  T
Q  112 aaatatgacaagttgaggtgcagagctcctagaagtcgttgaccaaacttttgggtcctcacaagcttcctaca 185  Q
      |||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  51308703 gtatatgacaagttgaggtgcatagctcctagaagccgttgacc-aacttttgggtcctcgcaagcttcctaca 51308631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 20871322 - 20871255
Alignment:
Q  17 attcttaatagcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaa 84  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||    
T  20871322 attcttaataccctccctcaaactcaaggtaagagaactcttaacttgagtttggattacaaagctaa 20871255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 55849578 - 55849755
Alignment:
Q  14 attattcttaatagcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacagcaaaca-aagaaataaagtgcaaaga 112  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |      
T  55849578 attattcttaatagcctccctcaaactcaaggtaagataactcttagcttgagtttgaattacaaagctaacagcaaacagaagaaataaagtgcagaag 55849677  T
Q  113 aatatgacaagttgaggtgcagagctcctagaagtcgttgaccaaacttttgggtcctcacaagcttcctacagtgtct 191  Q
     |||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||    
T  55849678 tatatgacaagttgaggtgcatagctcctcgaagtcgttgacc-aacttttgggtcctcgcaagcttcctacagcgtct 55849755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 15040083 - 15040130
Alignment:
Q  31 ccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaa 79  Q
    ||||||||||||||||||||||| |||| |||| |||||||| ||||||    
T  15040083 ccctcaaactcaaggtaagagaattctt-gcttgagtttgaaatacaaa 15040130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 15114341 - 15114294
Alignment:
Q  31 ccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaa 79  Q
    ||||||||||||||||||||||| |||| |||| |||||||| ||||||    
T  15114341 ccctcaaactcaaggtaagagaattctt-gcttgagtttgaaatacaaa 15114294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 4678087 - 4678002
Alignment:
Q  14 attattcttaatagcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacagcaaacaaagaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  4678087 attattcttaatagcctccctcaaactcaaggtaagagaactcttagcttgaatttgaattacaaagctaacagcaaacaaagaaa 4678002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 19472664 - 19472731
Alignment:
Q  26 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacagcaaaca 93  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||    
T  19472664 agcctccctcaaactcaaggtaagagaactcttagcttgagtttgaattacaaagcaaacaccaaaca 19472731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 19543589 - 19543656
Alignment:
Q  26 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacagcaaaca 93  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||    
T  19543589 agcctccctcaaactcaaggtaagagaactcttagcttgagtttgaattacaaagcaaacaccaaaca 19543656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 19589107 - 19589040
Alignment:
Q  26 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacagcaaaca 93  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||    
T  19589107 agcctccctcaaactcaaggtaagagaactcttagcttgagtttgaattacaaagcaaacaccaaaca 19589040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 3785972 - 3786032
Alignment:
Q  26 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaaca 86  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  3785972 agccttcctcaaactcaaggaaagagaactcttagcttgagtttgaattacaaagctaaca 3786032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 20225649 - 20225719
Alignment:
Q  14 attattcttaatagcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaa 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  20225649 attattcttaatagcctccctcaaactcaaggtaagagaactcttagattgagtttgaattacaaagctaa 20225719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 12685086 - 12685012
Alignment:
Q  26 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacagcaaacaaagaaat 100  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||| ||||    
T  12685086 agcctccctcaaactcaaggtaagagaactcttaacttgagtttgaattacaaagctaacaccaaacaaaaaaat 12685012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 16385540 - 16385467
Alignment:
Q  27 gcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattac-aaagctaacagcaaacaaagaaa 99  Q
    |||||| ||||||||||||||||| |||| ||| ||| |||||||||||| |||||||||| ||| || |||||    
T  16385540 gcctccatcaaactcaaggtaagataactattaacttgagtttgaattacaaaagctaacatcaaccagagaaa 16385467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 26389160 - 26389086
Alignment:
Q  26 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacag-caaacaaagaaa 99  Q
    |||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| || ||||||||||||    
T  26389160 agcctccctcaaactcaaggtaagagaactcttagcttgagtatggattacaaagctaaaagtcaaacaaagaaa 26389086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University