View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18109_low_4 (Length: 522)
Name: NF18109_low_4
Description: NF18109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18109_low_4 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 15 - 522
Target Start/End: Original strand, 26644463 - 26644970
Alignment:
| Q |
15 |
cataggtaatttaggccatgccttgattttgttatctgttaaatctacattggattagtttagaatatgctcattatgtgggctgtggttctgcgaatct |
114 |
Q |
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| T |
26644463 |
cataggtaatttaggccatgccttgattttgttatctgttaaatctacattggattagtttagaatatgctcattatgtgggttgtggttctgcgaatct |
26644562 |
T |
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| Q |
115 |
catttcagagcatgctatttgtgcttcatgagtggttctagatgttgttttttgttaaatccttccgtattgtttgttcttaggaacttatttaccttta |
214 |
Q |
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| T |
26644563 |
catttcagagcatgctatttgtgcttcatgagtggttctagatgttgttttttgttaaatccttccgtattgtttgttcttaggaacttatttaccttta |
26644662 |
T |
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| Q |
215 |
tttctaatattttaactacttgatggaatttcaagtggaaatggaaattttattgaaaacaaggctcttttgaactactccaagttgtctgaaggagttg |
314 |
Q |
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| T |
26644663 |
tttctaatattttaactacttgatggaacttcaagtggaaatggaaattttattgaaaacaaggctcttttgaactactccaagttgtctgaaggagttg |
26644762 |
T |
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| Q |
315 |
aagcagttaaaccaagttcaatcgcattgtctgaattccatttcctgctgcttttagagaataaggtcaaggtgtgtatgcacttatatatcactgtttt |
414 |
Q |
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| T |
26644763 |
aagcagttaaaccaagttcaatcgcattgtctgaattccatttcctgctgcttttagagaataaggtcaaggtgtgtatgcacttatctatcactgtttt |
26644862 |
T |
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| Q |
415 |
gtttgcatcatggtgctgtgcacaatatctttttgagttaacatttgcttcctaaattgtttgaacataggtcgtaaacagaactagtgagaacatcatt |
514 |
Q |
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| T |
26644863 |
gtttgcatcatggtgctgtgcacaatatctttttgagttaacatttgcttcctaaattgtttgaacataggtcgtaaatagaattagtgagaacatcatt |
26644962 |
T |
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| Q |
515 |
gaagaact |
522 |
Q |
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| T |
26644963 |
gaagaact |
26644970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 180
Target Start/End: Complemental strand, 31544027 - 31543928
Alignment:
| Q |
81 |
atgctcattatgtgggctgtggttctgcgaatctcatttcagagcatgctatttgtgcttcatgagtggttctagatgttgttttttgttaaatccttcc |
180 |
Q |
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| T |
31544027 |
atgctcattatgtgggtcatgcttctgcaaatctcatttcagaccatggtatttctgcctcatgaattattttaaatattgttttctgttaaatcattcc |
31543928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 47 - 522
Target Start/End: Complemental strand, 10714471 - 10713997
Alignment:
| Q |
47 |
tatctgttaaatctacattggattagtttagaatatgctcattatgtgggctgtggttctgcgaatctcatttcagagcatgctatttgtgcttcatgag |
146 |
Q |
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| T |
10714471 |
tatctgttaaatctacattggattagtttagaatatgctcattatgtgg-ctgtggttctgcgaatctcatttcagagcatgctatttgtgcttcatgag |
10714373 |
T |
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| Q |
147 |
tggttctagatgttgttttttgttaaatccttccgtattgtttgttcttaggaacttatttacctttatttctaatattttaactacttgatggaatttc |
246 |
Q |
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| T |
10714372 |
tggttctagatgttgttttttgttaaatccttccgtattgtttgttcttaggaacttatttacctttatttctaatattttaactacttgatggaacttc |
10714273 |
T |
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| Q |
247 |
aagtggaaatggaaattttattgaaaacaaggctcttttgaactactccaagttgtctgaaggagttgaagcagttaaaccaagttcaatcgcattgtct |
346 |
Q |
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| T |
10714272 |
aattggaaatggaaattttattgaaaacaaggctcttttgaaatactccaagttgtctgaaggagttgaagcagttaaaccaagttcaatcgcattgtct |
10714173 |
T |
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| Q |
347 |
gaattccatttcctgctgcttttagagaataaggtcaaggtgtgtatgcacttatatatcactgttttgtttgcatcatggtgctgtgcacaatatcttt |
446 |
Q |
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| T |
10714172 |
gaattccatttcctgctgcttttagagaataaggtcaaggtgtgtatgcacttatctatcactgttttgtttgcatcatggtgctgtgcacaatatcttt |
10714073 |
T |
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| Q |
447 |
ttgagttaacatttgcttcctaaattgtttgaacataggtcgtaaacagaactagtgagaacatcattgaagaact |
522 |
Q |
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| T |
10714072 |
ttgagttaacatttgcttcctaaattgtttgaacataggtcgtaaatagaattagcgagaacatcattgaagaact |
10713997 |
T |
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