View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18109_low_5 (Length: 499)

Name: NF18109_low_5
Description: NF18109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18109_low_5
NF18109_low_5
[»] chr2 (39 HSPs)
chr2 (82-346)||(10347399-10347665)
chr2 (82-255)||(10335585-10335757)
chr2 (370-452)||(10347055-10347137)
chr2 (149-330)||(10371480-10371671)
chr2 (17-86)||(10347743-10347812)
chr2 (99-286)||(9315713-9315906)
chr2 (82-204)||(8573767-8573886)
chr2 (108-255)||(10352823-10352987)
chr2 (82-197)||(9291711-9291823)
chr2 (370-450)||(10351509-10351590)
chr2 (115-195)||(9320773-9320853)
chr2 (115-195)||(9328390-9328470)
chr2 (108-195)||(12012813-12012900)
chr2 (108-194)||(11987751-11987837)
chr2 (120-195)||(7115945-7116020)
chr2 (82-195)||(9284431-9284541)
chr2 (122-201)||(10341134-10341213)
chr2 (286-345)||(10352737-10352795)
chr2 (97-171)||(9364443-9364517)
chr2 (391-452)||(10371180-10371242)
chr2 (17-86)||(9061256-9061325)
chr2 (107-195)||(9274291-9274379)
chr2 (52-95)||(9274469-9274513)
chr2 (97-210)||(9065867-9065977)
chr2 (31-86)||(9291901-9291956)
chr2 (55-94)||(8573658-8573698)
chr2 (370-445)||(9287943-9288019)
chr2 (408-452)||(10335075-10335119)
chr2 (286-345)||(9066078-9066136)
chr2 (286-345)||(10335433-10335491)
chr2 (286-345)||(11987932-11987990)
chr2 (120-195)||(12006394-12006469)
chr2 (286-345)||(12012994-12013052)
chr2 (17-87)||(9320939-9321009)
chr2 (288-345)||(9291565-9291621)
chr2 (408-445)||(9295444-9295481)
chr2 (370-445)||(8574213-8574289)
chr2 (26-82)||(9284314-9284370)
chr2 (55-94)||(16269038-16269078)
[»] chr8 (3 HSPs)
chr8 (370-452)||(41968146-41968229)
chr8 (116-163)||(41966980-41967027)
chr8 (288-345)||(41967181-41967237)
[»] chr4 (2 HSPs)
chr4 (286-343)||(26574525-26574581)
chr4 (223-255)||(26574609-26574641)
[»] chr3 (1 HSPs)
chr3 (29-86)||(37462447-37462504)
[»] scaffold0667 (2 HSPs)
scaffold0667 (120-195)||(4244-4319)
scaffold0667 (52-94)||(4420-4463)
[»] chr1 (2 HSPs)
chr1 (173-283)||(29443635-29443748)
chr1 (82-154)||(29468021-29468090)
[»] chr7 (1 HSPs)
chr7 (17-86)||(45237908-45237977)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 82 - 346
Target Start/End: Complemental strand, 10347665 - 10347399
Alignment:
Q  82 tgttgaaggaattcctcctaatatgaatgaaactatgttttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaat 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| |||||||||    
T  10347665 tgttgaaggaattcctcctaatatgaatgaaactatgttttgtgttggaagtcttgtcccaccttccttccctgttgataatcgtaggaagaaggagaat 10347566  T
Q  182 catccaagcaagagaaggtactttttattgtttaactg--tttttgttgtgtataagttatatcagttcaatggacttatcatatcatatacgcagttaa 279  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10347565 catccaagcaagagaaggtacttcttattgtttaactgagtttttgttgtgtataagttatatcagttcaatggacttatcatatcatatatgcagttaa 10347466  T
Q  280 actctatcaaattgaattcttatcataggatagagtattttctaattactttgaagtctttaccttg 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10347465 actctatcaaattgaattcttatcataggatagagtattttctaattactttgaagtctttaccttg 10347399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 82 - 255
Target Start/End: Complemental strand, 10335757 - 10335585
Alignment:
Q  82 tgttgaaggaattcctcctaatatgaatgaaactatgttttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaat 181  Q
    ||||||||||||||||   ||| || |||| |||||| |||||||||||||||||||| ||| |||||  |||||||||||||||||||| ||| |||||    
T  10335757 tgttgaaggaattcct---aatttggatgacactatgatttgtgttggaagtcttgtttcaccttccttacctgttgataatcgtaggaagaagcagaat 10335661  T
Q  182 catccaagcaagagaaggtactttttattgtttaact--gtttttgttgtgtataagttatatcagttcaatggac 255  Q
    | | |||||||| |||||||||| ||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  10335660 cgtacaagcaagggaaggtacttcttattgtttgactgagtttttgttgtgtataagttatatcagttcaatggac 10335585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 370 - 452
Target Start/End: Complemental strand, 10347137 - 10347055
Alignment:
Q  370 taaagagaggaaagttgttgtttagaaattggctactgtgaaattactccaaatttatgcacagttcctttcaaaaacatggt 452  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  10347137 taaagagaggaaagttgttgtttagaaattggctactgggaaattactccaaatttatgcatagttcctttcaaaaacatggt 10347055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 149 - 330
Target Start/End: Complemental strand, 10371671 - 10371480
Alignment:
Q  149 taccctgttgataatcgtaggaaaaaggagaatcatccaagcaagagaaggtactttttattgtttaact--gtttttgttgtgtataagtt-atatcag 245  Q
    |||| |||||||||| ||||||| |||||||||||| ||||||||||||||||||| || |  |||||||  |||||||||||||||||||| |||||||    
T  10371671 taccttgttgataatggtaggaagaaggagaatcatacaagcaagagaaggtacttattgt--tttaactgagtttttgttgtgtataagttaatatcag 10371574  T
Q  246 ttcaatggacttatcatatcatatacgcagttaaactct---------atcaaattgaattcttatcataggatagagtattttctaattactt 330  Q
    |||||||||   ||||||| ||||| |||||||||||||          ||||||||||||||||||||||| || || |||||||||||||||    
T  10371573 ttcaatggatccatcatattatatatgcagttaaactctgtgttaaaggtcaaattgaattcttatcatagggtaaaggattttctaattactt 10371480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 10347812 - 10347743
Alignment:
Q  17 gtgtttcgatttacctttgaaattgttgaggcccatatgttattctagtgatggaagtaaggttctgttg 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10347812 gtgtttcgatttacctttgaaattgttgaggcccatatgttattctagtgatggaagtaaggttctgttg 10347743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 99 - 286
Target Start/End: Complemental strand, 9315906 - 9315713
Alignment:
Q  99 ctaatatgaatgaaactatgttttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaatcatccaag------caa 192  Q
    ||||| || ||||| ||||| ||||||||| ||||||||| |||| ||||| |||||||||| || ||||||| |||||||||||| ||||      |||    
T  9315906 ctaatttggatgaagctatgatttgtgttgaaagtcttgtaccaccttccttccctgttgattattgtaggaagaaggagaatcatacaagcaagaacaa 9315807  T
Q  193 gagaaggtactt-tttattgtttaactgtttttgttgtgtataagtt-atatcagttcaatggacttatcatatcatatacgcagttaaactctat 286  Q
    |||||||||||| | |||| ||| |  ||||||| | |||||||||| || ||||||||||||||  ||||||| ||||| | |||||||||||||    
T  9315806 gagaaggtacttatatattatttga--gtttttgctatgtataagttaatgtcagttcaatggacccatcatatgatataagtagttaaactctat 9315713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 8573767 - 8573886
Alignment:
Q  82 tgttgaaggaattcctcctaatatgaatgaaactatgttttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaat 181  Q
    ||||||||||||||||   |||  ||||| | ||||||||||||||||||||||||| |||| || || ||||||||||||| |||||||  ||||||||    
T  8573767 tgttgaaggaattcct---aattggaatgcagctatgttttgtgttggaagtcttgtaccacctttcttccctgttgataattgtaggaaggaggagaat 8573863  T
Q  182 catccaagcaagagaaggtactt 204  Q
      | |||||||||||||||||||    
T  8573864 tgtacaagcaagagaaggtactt 8573886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 108 - 255
Target Start/End: Complemental strand, 10352987 - 10352823
Alignment:
Q  108 atgaaactatgttttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaatcatccaagcaagag------aaggta 201  Q
    |||| |||||| ||||||||||||||||||| |||| || || |||||||||||||||||||||  ||||||||| | ||||| ||||      ||||||    
T  10352987 atgacactatgatttgtgttggaagtcttgtaccaccttacttccctgttgataatcgtaggaagcaggagaatcctacaagcgagagcgagaaaaggta 10352888  T
Q  202 ctttttattgtttaac-----------tgtttttgttgtgtataagttatatcagttcaatggac 255  Q
    ||| ||||||||||||           |||| |||||||||||||||||||||||||| ||||||    
T  10352887 cttcttattgtttaactgagttgttgttgttgttgttgtgtataagttatatcagttcgatggac 10352823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 9291823 - 9291711
Alignment:
Q  82 tgttgaaggaattcctcctaatatgaatgaaactatgttttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaat 181  Q
    ||||||||||||||||   ||| || ||||| ||||| ||||||||| ||||||| | |||| ||||| ||||||||||||| ||||||| |||||||||    
T  9291823 tgttgaaggaattcct---aatttggatgaagctatgatttgtgttgaaagtcttctaccaccttccttccctgttgataattgtaggaagaaggagaat 9291727  T
Q  182 catccaagcaagagaa 197  Q
    ||| | | ||||||||    
T  9291726 catacgaacaagagaa 9291711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 370 - 450
Target Start/End: Complemental strand, 10351590 - 10351509
Alignment:
Q  370 taaagagaggaaagttgttgtttagaaattggc-tactgtgaaattactccaaatttatgcacagttcctttcaaaaacatg 450  Q
    ||||||||||||||||||||||||||  ||||| |||  ||||| ||||||||||||||||| |||||||||||||| ||||    
T  10351590 taaagagaggaaagttgttgtttagattttggcctaccatgaaagtactccaaatttatgcatagttcctttcaaaagcatg 10351509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 9320853 - 9320773
Alignment:
Q  115 tatgttttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaatcatccaagcaagag 195  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||||||  || ||| |||||||||| | ||||||||||    
T  9320853 tatgttttgtgttggaagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagag 9320773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 9328470 - 9328390
Alignment:
Q  115 tatgttttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaatcatccaagcaagag 195  Q
    |||||||| ||||||||||||||| |||| ||||| |||||||||||||  |||||| |||||||||| | ||||||||||    
T  9328470 tatgttttctgttggaagtcttgtaccaccttccttccctgttgataattctaggaagaaggagaatcgtacaagcaagag 9328390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 12012813 - 12012900
Alignment:
Q  108 atgaaactatgttttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaatcatccaagcaagag 195  Q
    ||||| ||||| ||||||||||||||||||| ||||  |||| |||||||||||||  |||||| |||| ||||||| ||||||||||    
T  12012813 atgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagag 12012900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 11987751 - 11987837
Alignment:
Q  108 atgaaactatgttttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaatcatccaagcaaga 194  Q
    ||||| ||||| ||||||||||||||||||| ||||  |||| |||||||||||||  |||||| |||| ||||||| |||||||||    
T  11987751 atgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaaga 11987837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 7115945 - 7116020
Alignment:
Q  120 tttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaatcatccaagcaagag 195  Q
    ||||| ||| ||| ||||| |||| ||||| ||||||||||||| ||||||| |||||||||||| ||||||||||    
T  7115945 tttgttttgaaagccttgtaccaccttccttccctgttgataattgtaggaagaaggagaatcatacaagcaagag 7116020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 9284431 - 9284541
Alignment:
Q  82 tgttgaaggaattcctcctaatatgaatgaaactatgttttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaat 181  Q
    ||||||||||||||||   ||| || ||||| ||||| ||||||||| ||||||||| |||| ||||| |||||||||||||  ||| || |||||||||    
T  9284431 tgttgaaggaattcct---aatttggatgaagctatgatttgtgttgaaagtcttgtgccaccttccttccctgttgataattctagtaagaaggagaat 9284527  T
Q  182 catccaagcaagag 195  Q
    | |  |||||||||    
T  9284528 cgtttaagcaagag 9284541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 10341213 - 10341134
Alignment:
Q  122 tgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaatcatccaagcaagagaaggta 201  Q
    |||||||||||| | || |||| || || ||||||||| ||||||||||| |||||||||| | ||||||||||||||||    
T  10341213 tgtgttggaagtatagtaccacctttcttccctgttgacaatcgtaggaagaaggagaatccttcaagcaagagaaggta 10341134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 10352795 - 10352737
Alignment:
Q  286 tcaaattgaattcttatcataggatagagtattttctaattactttgaagtctttacctt 345  Q
    |||||||||||||||||||||||||| || ||| |||||||||||||| |||||||||||    
T  10352795 tcaaattgaattcttatcataggata-aggattctctaattactttgacgtctttacctt 10352737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 9364517 - 9364443
Alignment:
Q  97 tcctaatatgaatgaaactatgttttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaa 171  Q
    |||||||||||||||| ||||| |||||||||| |||||||| |||| ||| |  |||||||||||| |||||||    
T  9364517 tcctaatatgaatgaagctatgatttgtgttggtagtcttgtaccaccttctttacctgttgataattgtaggaa 9364443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 452
Target Start/End: Complemental strand, 10371242 - 10371180
Alignment:
Q  391 ttagaaattggc-tactgtgaaattactccaaatttatgcacagttcctttcaaaaacatggt 452  Q
    |||||||||||| |||  ||||||||||||||||||||||| |||||||||||||| ||||||    
T  10371242 ttagaaattggcctaccatgaaattactccaaatttatgcatagttcctttcaaaagcatggt 10371180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 9061256 - 9061325
Alignment:
Q  17 gtgtttcgatttacctttgaaattgttgaggcccatatgttattctagtgatggaagtaaggttctgttg 86  Q
    ||||||| ||| ||||||| | || ||||||||  |||||||||||||||||||| ||||||||||||||    
T  9061256 gtgtttcaattcacctttggactttttgaggccgttatgttattctagtgatggaggtaaggttctgttg 9061325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 9274379 - 9274291
Alignment:
Q  107 aatgaaactatgttttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaatcatccaagcaagag 195  Q
    |||| ||||||  |||| ||||||||| |||| ||||  |||| |||||||||||||  |||||| |||||||||||| ||||||||||    
T  9274379 aatggaactattatttgggttggaagttttgtaccaccctccttccctgttgataattctaggaagaaggagaatcatacaagcaagag 9274291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 9274513 - 9274469
Alignment:
Q  52 tatgttattctagtgatggaagtaaggttctgtt-gaaggaattc 95  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  9274513 tatgttattctagtgatggaagtaaggttctgttggaaggaattc 9274469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 210
Target Start/End: Original strand, 9065867 - 9065977
Alignment:
Q  97 tcctaatatgaatgaaactatgttttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaatcatccaagcaagaga 196  Q
    |||||||  |||||| ||| || ||||||||| ||||||||| |||  ||||| ||||||||||||| |||||   ||||||||||   ||| |||||||    
T  9065867 tcctaattggaatgacactgtgatttgtgttgaaagtcttgtaccaacttccttccctgttgataattgtagg---aaggagaatcgaacaaccaagaga 9065963  T
Q  197 aggtactttttatt 210  Q
    |||||||| |||||    
T  9065964 aggtacttcttatt 9065977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 9291956 - 9291901
Alignment:
Q  31 ctttgaaattgttgaggcccatatgttattctagtgatggaagtaaggttctgttg 86  Q
    |||||||||  ||||||||  ||||||||||||| |||||||||||||||||||||    
T  9291956 ctttgaaatctttgaggcctttatgttattctagggatggaagtaaggttctgttg 9291901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 8573658 - 8573698
Alignment:
Q  55 gttattctagtgatggaagtaaggttctgtt-gaaggaatt 94  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  8573658 gttattctagtgatggaagtaaggttctgttggaaggaatt 8573698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 445
Target Start/End: Complemental strand, 9288019 - 9287943
Alignment:
Q  370 taaagagaggaaagttgttgtttagaaattggc-tactgtgaaattactccaaatttatgcacagttcctttcaaaa 445  Q
    |||||||| |||||| |||| | | |||||||| |||  ||||||||||||||||||||||| |||||||| |||||    
T  9288019 taaagagaagaaagtagttgctgaaaaattggcctaccatgaaattactccaaatttatgcatagttccttgcaaaa 9287943  T

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Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 452
Target Start/End: Complemental strand, 10335119 - 10335075
Alignment:
Q  408 tgaaattactccaaatttatgcacagttcctttcaaaaacatggt 452  Q
    |||||||||||||||||| | || |||||||||||||||||||||    
T  10335119 tgaaattactccaaatttgtacatagttcctttcaaaaacatggt 10335075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 9066078 - 9066136
Alignment:
Q  286 tcaaattgaattcttatcataggatagagtattttctaattactttgaagtctttacctt 345  Q
    |||||||||| ||||||||||||||| || ||| ||||||||||||||||| | ||||||    
T  9066078 tcaaattgaagtcttatcataggataaag-attctctaattactttgaagtttctacctt 9066136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 10335491 - 10335433
Alignment:
Q  286 tcaaattgaattcttatcataggatagagtattttctaattactttgaagtctttacctt 345  Q
    ||||||||||||||||||||||||| ||| ||| |||||||||| || |||| |||||||    
T  10335491 tcaaattgaattcttatcataggat-gaggattctctaattactctggagtcgttacctt 10335433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 11987932 - 11987990
Alignment:
Q  286 tcaaattgaattcttatcataggatagagtattttctaattactttgaagtctttacctt 345  Q
    ||||||||||||| ||| |||||| | || ||||||||||||||||||||||| ||||||    
T  11987932 tcaaattgaattcctattataggaca-aggattttctaattactttgaagtctctacctt 11987990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 12006394 - 12006469
Alignment:
Q  120 tttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaatcatccaagcaagag 195  Q
    ||||||||||||||||||| |  | ||||| ||||||||| ||| ||| ||| |||||||||| | ||||||||||    
T  12006394 tttgtgttggaagtcttgtactgccttccttccctgttgagaattgtacgaagaaggagaatcgtacaagcaagag 12006469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 12012994 - 12013052
Alignment:
Q  286 tcaaattgaattcttatcataggatagagtattttctaattactttgaagtctttacctt 345  Q
    ||||||||||||||||| |||||| | || ||| ||||||||||||||||||| ||||||    
T  12012994 tcaaattgaattcttattataggaca-aggattctctaattactttgaagtctctacctt 12013052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 9321009 - 9320939
Alignment:
Q  17 gtgtttcgatttacctttgaaattgttgaggcccatatgttattctagtgatggaagtaaggttctgttga 87  Q
    ||||| |||||||||||||||||  ||||||||  || ||||||| ||||||||||  |||||| ||||||    
T  9321009 gtgttacgatttacctttgaaatctttgaggcctttaggttattcgagtgatggaaaaaaggttttgttga 9320939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 345
Target Start/End: Complemental strand, 9291621 - 9291565
Alignment:
Q  288 aaattgaattcttatcataggatagagtattttctaattactttgaagtctttacctt 345  Q
    ||||||||||||||| |||||| | || ||| ||||||||||||||||||| ||||||    
T  9291621 aaattgaattcttattataggaca-aggattctctaattactttgaagtctctacctt 9291565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 445
Target Start/End: Original strand, 9295444 - 9295481
Alignment:
Q  408 tgaaattactccaaatttatgcacagttcctttcaaaa 445  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  9295444 tgaaattactccaaatttaggcatagttcctttcaaaa 9295481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 445
Target Start/End: Original strand, 8574213 - 8574289
Alignment:
Q  370 taaagagaggaaagttgttgtttagaaattggc-tactgtgaaattactccaaatttatgcacagttcctttcaaaa 445  Q
    |||||||  |||| ||||| | ||||||||||| |||  ||||||||||| ||||||||||| |||||| |||||||    
T  8574213 taaagaggagaaaattgttatatagaaattggcctaccatgaaattactctaaatttatgcatagttccattcaaaa 8574289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 9284314 - 9284370
Alignment:
Q  26 tttacctttgaaattgttgaggcccatatgttattctagtgatggaagtaaggttct 82  Q
    ||||| ||||||||  ||||||||  || |||||||||||||||| |||||||||||    
T  9284314 tttacgtttgaaatctttgaggcctttaggttattctagtgatggtagtaaggttct 9284370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 16269078 - 16269038
Alignment:
Q  55 gttattctagtgatggaagtaaggttct-gttgaaggaatt 94  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  16269078 gttattctagtgatggaagtaaggttctctttgaaggaatt 16269038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 370 - 452
Target Start/End: Original strand, 41968146 - 41968229
Alignment:
Q  370 taaagagaggaaagttgttgtttagaaattgg-ctactgtgaaattactccaaatttatgcacagttcctttcaaaaacatggt 452  Q
    |||||||| ||||||||||||||||||||||| ||||  |||||||||||| |||||||||| ||||||||||| || ||||||    
T  41968146 taaagagaagaaagttgttgtttagaaattggcctaccatgaaattactcctaatttatgcatagttcctttcagaagcatggt 41968229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 41966980 - 41967027
Alignment:
Q  116 atgttttgtgttggaagtcttgttccactttcctaccctgttgataat 163  Q
    ||||||||||||||||||||||| |||| ||||| |||||||| ||||    
T  41966980 atgttttgtgttggaagtcttgtaccaccttccttccctgttgttaat 41967027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 345
Target Start/End: Original strand, 41967181 - 41967237
Alignment:
Q  288 aaattgaattcttatcataggatagagtattttctaattactttgaagtctttacctt 345  Q
    ||||||||||||||| |||||||| | |||| ||||||||||| |||| |||||||||    
T  41967181 aaattgaattcttattataggata-actattctctaattacttcgaaggctttacctt 41967237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 26574581 - 26574525
Alignment:
Q  286 tcaaattgaattcttatcataggatagagtattttctaattactttgaagtctttacc 343  Q
    |||||||||||||||||||||||||| || ||| |||||||||||||| |||||||||    
T  26574581 tcaaattgaattcttatcataggata-aggattctctaattactttgacgtctttacc 26574525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 26574641 - 26574609
Alignment:
Q  223 ttgttgtgtataagttatatcagttcaatggac 255  Q
    |||||||||||||||||||||||||||||||||    
T  26574641 ttgttgtgtataagttatatcagttcaatggac 26574609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 37462504 - 37462447
Alignment:
Q  29 acctttgaaattgttgaggcccatatgttattctagtgatggaagtaaggttctgttg 86  Q
    |||||||||||  ||||||||  ||||||||||||||||||||||||||||| |||||    
T  37462504 acctttgaaatctttgaggcctttatgttattctagtgatggaagtaaggttttgttg 37462447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 4319 - 4244
Alignment:
Q  120 tttgtgttggaagtcttgttccactttcctaccctgttgataatcgtaggaaaaaggagaatcatccaagcaagag 195  Q
    ||||||||||||||||||| |||| |||||  ||||||||||||  ||| || |||||||||||| || |||||||    
T  4319 tttgtgttggaagtcttgtaccaccttcctttcctgttgataattctagtaagaaggagaatcatacatgcaagag 4244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 4463 - 4420
Alignment:
Q  52 tatgttattctagtgatggaagtaaggttctg-ttgaaggaatt 94  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  4463 tatgttattctagtgatggaagtaaggttctgattgaaggaatt 4420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 29443635 - 29443748
Alignment:
Q  173 aaggagaatcatccaagcaagagaaggtactttttattgtttaact--gtttttgttgtgtataagtt-atatcagttcaatggacttatcatatcatat 269  Q
    |||||||||||  ||||||||||||||||||| |||||| ||| ||  ||||||  | |||||||||| |||||| ||||||||||  ||||||| ||||    
T  29443635 aaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatat 29443734  T
Q  270 acgcagttaaactc 283  Q
    |   ||||||||||    
T  29443735 atctagttaaactc 29443748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 29468021 - 29468090
Alignment:
Q  82 tgttgaaggaattcctcctaatatgaatgaaactatgttttgtgttggaagtcttgttccactttcctaccct 154  Q
    ||||||||||||||||   ||| |||||||| ||||| ||||||||||||||||||| |||| ||||| ||||    
T  29468021 tgttgaaggaattcct---aatttgaatgaagctatgatttgtgttggaagtcttgtaccaccttccttccct 29468090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 45237977 - 45237908
Alignment:
Q  17 gtgtttcgatttacctttgaaattgttgaggcccatatgttattctagtgatggaagtaaggttctgttg 86  Q
    ||||||| |||| | | ||||||||||||||||  |||||||||| || ||| ||||||| |||||||||    
T  45237977 gtgtttcaattttcatctgaaattgttgaggcctttatgttattcaagcgatcgaagtaaagttctgttg 45237908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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