View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18109_low_9 (Length: 397)
Name: NF18109_low_9
Description: NF18109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18109_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 188 - 387
Target Start/End: Original strand, 45439650 - 45439849
Alignment:
| Q |
188 |
ttattactttgcatacaaagaatcttctctttgaacttgcatgatcttctctcaccatactatctttgagagtactcaatatgacaataaagaaagttgt |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45439650 |
ttattactttgcatacaaagaatcttctctttgaacttgcatgatcttctctcaccatactatctttgagagtactcaaaatgacaataaagaaagttgt |
45439749 |
T |
|
| Q |
288 |
gcaaccaacactttacccaattcaagattctaaaggttggccatcattttcttgacagaggaataatttattcagttagtttaatcataaatgccctttg |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45439750 |
gcaaccaacactttacccaattcaagattctaaaggttggccatcattttcttgacagaggaataatttattcagttagtttaatcattaatgccctttg |
45439849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 45439457 - 45439622
Alignment:
| Q |
19 |
atatgttctatgtatctatccattatcgtaatgactaatctgtaccggaaaattgtgtatgtcacttttagtgagtttttccttctatccattttttcca |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45439457 |
atatgttctatgtatctatccattattgtaatgactaatctgtaccggaaaattgtgtatgtcacttttagtgagtttttccttctatccattttttcca |
45439556 |
T |
|
| Q |
119 |
ttcacaaattttaaaatgaaaatcttatt--aaaaattgagttcaattttactcggaacaatttaa |
182 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| |
|
|
| T |
45439557 |
ttcacaaattttaaaatgaaaatcttattaaaaaaaatgagttcaatttcactcggaacaatttaa |
45439622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University