View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1810_high_7 (Length: 238)
Name: NF1810_high_7
Description: NF1810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1810_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 36682173 - 36681928
Alignment:
| Q |
1 |
ttcctaataaatttattgtgacattggattaccttgtccggaaaaatatgtttctaactcaattgcaaaatcacaannnnnnnngtttatcaatagagac |
100 |
Q |
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| T |
36682173 |
ttcctaataaatttatggtgacattggattaccttgtccggaaaaatatgtttctaactcaattgcaaaatcacaa-tttttttgtttatcaatagagac |
36682075 |
T |
|
| Q |
101 |
aatgagtttaaacctagctataagccatagcccccgtcactagacataaaaattcgctctct-----------agnnnnnnnnnngacatagaccaatgc |
189 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| | ||||||||||||||| |
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| T |
36682074 |
aatgagtttaaacctagctataagccatatcccccgtcactagacataaacatacgctctctataaaaaaaagaataaaaaaaaagacatagaccaatgc |
36681975 |
T |
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| Q |
190 |
tagtgacggttgtgaatttgagagtcccacaatacttgatgcgtaga |
236 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
36681974 |
tagtgacggtcgtgaattcgagagtcccacaatacttgatgcgtaga |
36681928 |
T |
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