View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1810_low_1 (Length: 440)
Name: NF1810_low_1
Description: NF1810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1810_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 425
Target Start/End: Complemental strand, 8840553 - 8840138
Alignment:
| Q |
13 |
aatatcatcaatactgattctttccagccccagctgctgttgaatctcctcgaacgcggtccttctcgccacaatgtacacctgacaacactcactttca |
112 |
Q |
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| T |
8840553 |
aatatcatcaatactgattctttccagccccagctgctgttgaatctcctcgaacgcggtccttctcgccacaatgtacacctgacaacactcactttca |
8840454 |
T |
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| Q |
113 |
tatcctccgatcaacatctcccccacaatcttactcatacaaacaatcgcctcatcaggataaccaggaaaattcgtttcgaattcttctggttgatcct |
212 |
Q |
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| T |
8840453 |
tatcctccgatcaacatctcccccacaatcttgctcatacaaacaatcgcctcatcaggataaccaggaaaattcgtttcgaattcttctggttgatcct |
8840354 |
T |
|
| Q |
213 |
gatgatctgattgcccgtcctgttgatctgacgccac---ttttcgttttgcatcaaccttttcattgatattgatatcaggattcacttcggtctggat |
309 |
Q |
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|||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8840353 |
gatgatctgattgcccgtcctgttgatccgacaccacttgttttcgttttgcatcaaccttttcattgatattgatatcaggattcacttcggtctggat |
8840254 |
T |
|
| Q |
310 |
tctagaatattctatcaacacgcgaaaatcttcttccaaaaacgccatcgctttctgttgaattttaccaacacgattggctattgactttcttctttca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8840253 |
tctagaatattctatcaacacgcgaaaatcttcttccaaaaacgccatcgctttctgttgaattgtaccaacacgattggctattgactttcttctttca |
8840154 |
T |
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| Q |
410 |
tctatggtttcttttt |
425 |
Q |
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|||||||||||||||| |
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| T |
8840153 |
tctatggtttcttttt |
8840138 |
T |
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