View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1810_low_11 (Length: 230)
Name: NF1810_low_11
Description: NF1810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1810_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 36682469 - 36682686
Alignment:
| Q |
1 |
agaaccaatctaaaactgtttccttttcatcaaacaccttaaagcaatggcacacaaaggggtgaatatcaatgtata----cgtatcatgtgccatgtc |
96 |
Q |
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| T |
36682469 |
agaaccaaactaaaactgtttccttttcagcaaacaccttaaagcaatggcacacaaaggggtgtatatcaatgtatatatacgtatcatgtgccatgtc |
36682568 |
T |
|
| Q |
97 |
actaagctagttgttgacatggcacacaactgtctagttagttacacagttgtcaagttagttagaggacttggtgactaggcaaagtttgtttgactca |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36682569 |
actaagctagttgttgacatggcacacaactgtctagttagttacacagttgtcaagttagttagaggacttggtgactaggcaaagtttgtttgactca |
36682668 |
T |
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| Q |
197 |
aactattaggttattaat |
214 |
Q |
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|||||||||||||||||| |
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| T |
36682669 |
aactattaggttattaat |
36682686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 40555403 - 40555479
Alignment:
| Q |
67 |
tatcaatgtatacgtatcatgtgccatgtcactaagctagttgttgacatggcacacaactgtctagttagttacac |
143 |
Q |
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||||||| |||| |||||||||| ||||||||||||||||||| |||||||||| ||| ||| | |||||||||||| |
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| T |
40555403 |
tatcaatatatatgtatcatgtgtcatgtcactaagctagttgctgacatggcatacagctgccaagttagttacac |
40555479 |
T |
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