View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1810_low_2 (Length: 359)
Name: NF1810_low_2
Description: NF1810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1810_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 151 - 322
Target Start/End: Complemental strand, 51977942 - 51977771
Alignment:
| Q |
151 |
gaatgcaaaaaccagtgcatcccttccttatctttctcaccgtaataacaccattcttcaacttccataaaaggtcatctcaatttttcattaccaataa |
250 |
Q |
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| T |
51977942 |
gaatgcaaaaaccagtgcaccgcttccttatctttctcaccgtaataacaccattcttcaacttccataaaaggtcatctcaatttttcattaccaataa |
51977843 |
T |
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| Q |
251 |
cagagtatacacgtacgtgtttctaatactttccatttctcgcaagaatccaaatttacaacagcaatccgt |
322 |
Q |
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| T |
51977842 |
cagagtatacacgtatgtgtttctaagactttccatttctcgcaagaatccaacttaacaacagcaatccgt |
51977771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 51978051 - 51977959
Alignment:
| Q |
13 |
ttctttccttcggatataaatcaattaaaggcatgaattcattatttgcctagttgatatgatttttcgtaactttagcattttagttttaac |
105 |
Q |
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| T |
51978051 |
ttctttccttcggatataaatccattaaaggcatgaattcattatttgcttagttgatatgatttctcgtaactttagcattttagttttaac |
51977959 |
T |
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