View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1810_low_4 (Length: 336)

Name: NF1810_low_4
Description: NF1810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1810_low_4
NF1810_low_4
[»] chr7 (40 HSPs)
chr7 (19-325)||(5774952-5775258)
chr7 (104-219)||(35132778-35132892)
chr7 (125-219)||(34899756-34899850)
chr7 (140-219)||(22742801-22742879)
chr7 (125-186)||(8013647-8013708)
chr7 (125-217)||(30756970-30757062)
chr7 (239-306)||(41553492-41553559)
chr7 (239-306)||(41553837-41553904)
chr7 (239-306)||(41554182-41554249)
chr7 (104-298)||(1749217-1749405)
chr7 (125-219)||(19404904-19404997)
chr7 (125-215)||(37837612-37837701)
chr7 (242-314)||(24069444-24069516)
chr7 (255-325)||(969485-969556)
chr7 (239-325)||(3224448-3224535)
chr7 (126-216)||(9450289-9450379)
chr7 (154-298)||(48930657-48930794)
chr7 (126-219)||(13797081-13797173)
chr7 (125-182)||(19296726-19296782)
chr7 (125-218)||(48316962-48317055)
chr7 (136-219)||(5078544-5078625)
chr7 (239-303)||(28476189-28476253)
chr7 (136-219)||(39171740-39171824)
chr7 (140-219)||(24350993-24351071)
chr7 (239-314)||(27997057-27997132)
chr7 (140-218)||(35665282-35665360)
chr7 (239-296)||(24350909-24350966)
chr7 (125-217)||(25255086-25255176)
chr7 (239-314)||(30756869-30756941)
chr7 (125-182)||(42978456-42978513)
chr7 (171-215)||(3394365-3394409)
chr7 (239-305)||(8001605-8001668)
chr7 (239-305)||(12141367-12141430)
chr7 (239-283)||(19296839-19296883)
chr7 (242-323)||(26623830-26623909)
chr7 (239-283)||(34899685-34899729)
chr7 (136-219)||(40993040-40993124)
chr7 (239-283)||(42978579-42978623)
chr7 (140-219)||(47590176-47590253)
chr7 (114-219)||(48061259-48061365)
[»] chr1 (39 HSPs)
chr1 (84-212)||(34413247-34413376)
chr1 (112-219)||(45415395-45415502)
chr1 (104-219)||(49626738-49626852)
chr1 (125-219)||(31984029-31984123)
chr1 (125-219)||(1742130-1742223)
chr1 (114-219)||(18939160-18939263)
chr1 (126-219)||(7337812-7337905)
chr1 (100-210)||(34528543-34528650)
chr1 (127-219)||(15435022-15435113)
chr1 (239-314)||(47132870-47132945)
chr1 (129-219)||(8212059-8212149)
chr1 (126-211)||(45789415-45789498)
chr1 (136-219)||(23291792-23291874)
chr1 (125-219)||(940214-940307)
chr1 (125-186)||(7836949-7837009)
chr1 (126-219)||(5983686-5983780)
chr1 (171-219)||(24597472-24597520)
chr1 (243-307)||(41994398-41994462)
chr1 (258-325)||(24582937-24583004)
chr1 (242-301)||(32679158-32679217)
chr1 (145-219)||(36775866-36775938)
chr1 (139-216)||(568936-569011)
chr1 (241-283)||(10776539-10776581)
chr1 (125-175)||(10776653-10776703)
chr1 (114-219)||(14872477-14872583)
chr1 (239-325)||(19060877-19060963)
chr1 (125-219)||(34878421-34878514)
chr1 (239-325)||(44543240-44543326)
chr1 (141-219)||(48750055-48750131)
chr1 (239-296)||(16161801-16161858)
chr1 (239-314)||(35484441-35484513)
chr1 (241-314)||(43412343-43412416)
chr1 (239-305)||(1742251-1742314)
chr1 (239-283)||(8211988-8212032)
chr1 (138-182)||(11462635-11462678)
chr1 (243-295)||(12635141-12635193)
chr1 (104-215)||(31692618-31692727)
chr1 (239-307)||(39724949-39725017)
chr1 (171-219)||(44543165-44543213)
[»] chr2 (43 HSPs)
chr2 (104-303)||(10237282-10237477)
chr2 (101-219)||(32448772-32448888)
chr2 (125-219)||(1415421-1415514)
chr2 (125-219)||(4778609-4778703)
chr2 (114-211)||(18763313-18763409)
chr2 (125-211)||(7646328-7646415)
chr2 (239-314)||(29574679-29574754)
chr2 (114-219)||(43397270-43397373)
chr2 (114-218)||(30400188-30400293)
chr2 (140-219)||(37994145-37994223)
chr2 (140-219)||(38445037-38445116)
chr2 (125-219)||(12648074-12648167)
chr2 (239-314)||(19062403-19062475)
chr2 (138-219)||(31788325-31788406)
chr2 (242-314)||(12647971-12648043)
chr2 (107-219)||(41694453-41694563)
chr2 (140-219)||(3308810-3308888)
chr2 (136-219)||(4098970-4099053)
chr2 (140-219)||(9169407-9169486)
chr2 (104-219)||(14955358-14955472)
chr2 (104-219)||(29574783-29574897)
chr2 (239-314)||(37994253-37994328)
chr2 (125-219)||(11985380-11985473)
chr2 (125-219)||(19062502-19062595)
chr2 (136-205)||(27097569-27097637)
chr2 (239-325)||(10929638-10929726)
chr2 (239-283)||(38445143-38445187)
chr2 (271-314)||(22538343-22538386)
chr2 (239-286)||(27097482-27097529)
chr2 (239-278)||(29173803-29173842)
chr2 (241-314)||(37876657-37876727)
chr2 (125-219)||(4041744-4041837)
chr2 (241-307)||(6358931-6358997)
chr2 (125-219)||(7448104-7448197)
chr2 (239-303)||(7677935-7677996)
chr2 (125-175)||(7678071-7678121)
chr2 (140-210)||(19029066-19029135)
chr2 (239-325)||(32448658-32448744)
chr2 (125-219)||(36943273-36943367)
chr2 (239-323)||(34128725-34128810)
chr2 (239-314)||(36943172-36943244)
chr2 (139-218)||(1421542-1421624)
chr2 (125-169)||(35220184-35220228)
[»] chr4 (51 HSPs)
chr4 (239-325)||(51888249-51888336)
chr4 (125-217)||(9643244-9643338)
chr4 (104-219)||(51888366-51888480)
chr4 (108-218)||(36161563-36161670)
chr4 (239-314)||(22300833-22300908)
chr4 (243-314)||(37683878-37683949)
chr4 (125-219)||(2520643-2520737)
chr4 (125-219)||(4142904-4142997)
chr4 (114-219)||(24099219-24099325)
chr4 (125-219)||(32766380-32766474)
chr4 (125-219)||(43510065-43510159)
chr4 (125-219)||(53810894-53810988)
chr4 (140-298)||(27651829-27651983)
chr4 (104-298)||(36194558-36194748)
chr4 (126-186)||(21225358-21225417)
chr4 (239-325)||(9643372-9643459)
chr4 (140-219)||(18935668-18935745)
chr4 (136-219)||(35348183-35348265)
chr4 (104-219)||(47320551-47320665)
chr4 (239-314)||(52944295-52944370)
chr4 (148-217)||(9634563-9634632)
chr4 (79-219)||(22300664-22300804)
chr4 (239-314)||(26633721-26633793)
chr4 (125-219)||(5119204-5119299)
chr4 (139-219)||(9713788-9713867)
chr4 (139-219)||(21686390-21686470)
chr4 (104-219)||(22038950-22039062)
chr4 (242-314)||(28857389-28857461)
chr4 (239-286)||(19853587-19853634)
chr4 (140-219)||(19853661-19853740)
chr4 (140-219)||(22611064-22611143)
chr4 (139-219)||(56040793-56040874)
chr4 (136-214)||(9178234-9178312)
chr4 (126-176)||(21231628-21231678)
chr4 (258-308)||(43853445-43853495)
chr4 (125-219)||(45418392-45418486)
chr4 (242-308)||(52934000-52934066)
chr4 (140-214)||(52944193-52944266)
chr4 (114-219)||(7009123-7009226)
chr4 (114-214)||(9165196-9165297)
chr4 (239-314)||(12199743-12199815)
chr4 (125-219)||(22558613-22558708)
chr4 (155-219)||(33920949-33921011)
chr4 (239-314)||(33921038-33921110)
chr4 (239-276)||(35395758-35395795)
chr4 (159-219)||(1621647-1621707)
chr4 (239-283)||(4142833-4142877)
chr4 (239-283)||(22611170-22611214)
chr4 (239-307)||(33332628-33332696)
chr4 (239-283)||(35348294-35348338)
chr4 (125-169)||(48257648-48257692)
[»] chr3 (48 HSPs)
chr3 (125-219)||(40556557-40556651)
chr3 (125-217)||(47042203-47042295)
chr3 (104-215)||(29239164-29239273)
chr3 (125-216)||(33579714-33579804)
chr3 (79-219)||(50194433-50194573)
chr3 (84-218)||(7546414-7546550)
chr3 (104-219)||(8914529-8914644)
chr3 (239-325)||(12947312-12947399)
chr3 (125-219)||(20465119-20465210)
chr3 (104-219)||(21289970-21290083)
chr3 (136-219)||(29921910-29921992)
chr3 (136-219)||(29971063-29971145)
chr3 (105-219)||(629055-629169)
chr3 (125-219)||(10232916-10233010)
chr3 (242-323)||(29239309-29239391)
chr3 (125-219)||(36461580-36461674)
chr3 (125-219)||(47895997-47896091)
chr3 (129-219)||(51303789-51303877)
chr3 (239-325)||(53807896-53807982)
chr3 (239-314)||(40487291-40487364)
chr3 (136-219)||(6954845-6954928)
chr3 (125-219)||(9797678-9797773)
chr3 (140-215)||(22290798-22290873)
chr3 (140-219)||(52923266-52923344)
chr3 (241-307)||(25842641-25842707)
chr3 (125-219)||(54148834-54148928)
chr3 (239-314)||(36461481-36461553)
chr3 (258-307)||(41818194-41818243)
chr3 (239-314)||(43488640-43488712)
chr3 (139-219)||(9998327-9998407)
chr3 (239-322)||(35175367-35175451)
chr3 (139-219)||(43488739-43488819)
chr3 (239-298)||(7546573-7546632)
chr3 (140-219)||(53508082-53508160)
chr3 (141-219)||(10108098-10108176)
chr3 (239-305)||(25461060-25461126)
chr3 (125-219)||(45568593-45568687)
chr3 (239-314)||(9998433-9998505)
chr3 (239-314)||(10108202-10108274)
chr3 (239-314)||(10233036-10233108)
chr3 (255-296)||(42460725-42460766)
chr3 (125-182)||(48650921-48650978)
chr3 (239-307)||(3606739-3606807)
chr3 (140-219)||(29249105-29249182)
chr3 (140-212)||(37040632-37040704)
chr3 (239-283)||(40556678-40556722)
chr3 (239-305)||(45568504-45568567)
chr3 (171-219)||(52116160-52116208)
[»] chr8 (43 HSPs)
chr8 (239-324)||(8443548-8443634)
chr8 (79-219)||(15344107-15344247)
chr8 (79-219)||(15433172-15433312)
chr8 (79-219)||(15524476-15524616)
chr8 (104-211)||(18890861-18890967)
chr8 (125-211)||(37971140-37971226)
chr8 (239-325)||(1239433-1239519)
chr8 (239-325)||(8826178-8826264)
chr8 (125-219)||(20559893-20559985)
chr8 (125-219)||(20571455-20571547)
chr8 (125-217)||(1239553-1239644)
chr8 (104-219)||(8826035-8826151)
chr8 (143-219)||(14585565-14585641)
chr8 (257-323)||(29617312-29617379)
chr8 (125-216)||(31013721-31013812)
chr8 (239-314)||(34609799-34609874)
chr8 (125-218)||(14545050-14545144)
chr8 (125-219)||(28897559-28897653)
chr8 (239-314)||(3673410-3673482)
chr8 (139-219)||(5046613-5046691)
chr8 (239-323)||(5333395-5333480)
chr8 (239-314)||(28086861-28086933)
chr8 (114-210)||(25191223-25191318)
chr8 (239-314)||(24099303-24099378)
chr8 (140-219)||(24099410-24099488)
chr8 (259-314)||(33342448-33342503)
chr8 (239-325)||(1236733-1236819)
chr8 (125-211)||(20553401-20553486)
chr8 (125-219)||(27110611-27110705)
chr8 (125-219)||(29937963-29938056)
chr8 (178-219)||(6831490-6831531)
chr8 (139-219)||(3240238-3240318)
chr8 (242-323)||(7677321-7677400)
chr8 (125-169)||(7677477-7677521)
chr8 (140-219)||(7883387-7883467)
chr8 (172-216)||(8443671-8443715)
chr8 (241-325)||(15344277-15344361)
chr8 (241-325)||(15433342-15433426)
chr8 (241-325)||(15524646-15524730)
chr8 (239-283)||(20553317-20553361)
chr8 (112-219)||(37663221-37663329)
chr8 (239-303)||(39657416-39657480)
chr8 (139-219)||(40211452-40211532)
[»] chr6 (30 HSPs)
chr6 (125-215)||(30894483-30894573)
chr6 (125-219)||(12170342-12170436)
chr6 (140-219)||(31296671-31296750)
chr6 (247-314)||(31296793-31296860)
chr6 (125-219)||(33053317-33053411)
chr6 (129-218)||(606055-606144)
chr6 (262-314)||(30140575-30140627)
chr6 (127-219)||(34018409-34018501)
chr6 (140-219)||(14801069-14801147)
chr6 (239-314)||(13546713-13546785)
chr6 (125-182)||(29320049-29320105)
chr6 (131-215)||(34222649-34222731)
chr6 (239-303)||(8102687-8102751)
chr6 (104-219)||(14801645-14801761)
chr6 (139-219)||(22571351-22571429)
chr6 (242-325)||(26588510-26588594)
chr6 (125-219)||(3913723-3913817)
chr6 (241-314)||(29319928-29319998)
chr6 (129-210)||(20220760-20220839)
chr6 (129-210)||(22114744-22114823)
chr6 (125-219)||(32191881-32191975)
chr6 (239-276)||(127638-127675)
chr6 (239-296)||(1523369-1523426)
chr6 (239-314)||(33053218-33053290)
chr6 (140-219)||(68150-68229)
chr6 (239-307)||(7976234-7976302)
chr6 (140-219)||(8102580-8102660)
chr6 (242-325)||(28981145-28981229)
chr6 (242-306)||(30493500-30493564)
chr6 (244-314)||(32327267-32327334)
[»] chr5 (33 HSPs)
chr5 (249-314)||(19120886-19120951)
chr5 (256-314)||(10332598-10332656)
chr5 (104-219)||(2979462-2979576)
chr5 (104-219)||(39567120-39567234)
chr5 (125-219)||(6012287-6012381)
chr5 (151-215)||(31314631-31314692)
chr5 (125-219)||(38597643-38597736)
chr5 (114-219)||(13007063-13007168)
chr5 (150-219)||(19103623-19103691)
chr5 (114-219)||(26878228-26878332)
chr5 (170-215)||(31364395-31364440)
chr5 (126-219)||(34945268-34945361)
chr5 (258-325)||(8088250-8088317)
chr5 (136-219)||(9113874-9113957)
chr5 (140-298)||(14211093-14211245)
chr5 (125-219)||(38007203-38007295)
chr5 (258-323)||(19349679-19349745)
chr5 (239-314)||(31391803-31391875)
chr5 (125-182)||(31391943-31392000)
chr5 (239-305)||(38597763-38597826)
chr5 (140-219)||(8096647-8096725)
chr5 (239-314)||(35921046-35921121)
chr5 (247-308)||(37986169-37986227)
chr5 (249-323)||(38110988-38111063)
chr5 (259-314)||(42886484-42886539)
chr5 (125-218)||(7036073-7036166)
chr5 (239-314)||(11073950-11074022)
chr5 (257-325)||(16758521-16758590)
chr5 (242-311)||(26510696-26510765)
chr5 (239-283)||(13007195-13007239)
chr5 (242-298)||(28540976-28541032)
chr5 (171-219)||(28541062-28541110)
chr5 (258-314)||(41749308-41749364)
[»] scaffold0888 (1 HSPs)
scaffold0888 (104-219)||(1824-1938)
[»] scaffold0445 (2 HSPs)
scaffold0445 (114-219)||(1179-1283)
scaffold0445 (242-314)||(1314-1383)
[»] scaffold0009 (1 HSPs)
scaffold0009 (79-219)||(58229-58369)
[»] scaffold0347 (1 HSPs)
scaffold0347 (239-314)||(5994-6069)
[»] scaffold0884 (1 HSPs)
scaffold0884 (125-182)||(2159-2215)
[»] scaffold0017 (2 HSPs)
scaffold0017 (112-219)||(32897-33004)
scaffold0017 (239-305)||(32806-32869)
[»] scaffold0603 (1 HSPs)
scaffold0603 (126-219)||(7564-7655)
[»] scaffold0026 (1 HSPs)
scaffold0026 (125-219)||(72013-72107)
[»] scaffold0039 (1 HSPs)
scaffold0039 (239-325)||(93070-93158)
[»] scaffold0127 (2 HSPs)
scaffold0127 (125-208)||(15338-15420)
scaffold0127 (239-314)||(15458-15531)
[»] scaffold0087 (1 HSPs)
scaffold0087 (125-169)||(25528-25572)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 5774952 - 5775258
Alignment:
Q  19 aactcaccattattgtcattatatgatatgatttcaacggctccacctcattcaaaatattccaacttctctccaagttcttttttctttcacttatcga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5774952 aactcaccattattgtcattatatgatatgatttcaacggctccacctcattcaaaatattccaacttctctccaagttcttttttctttcacttataga 5775051  T
Q  119 gaagatgtggttttatatca--ttttttgatctagaatcacccctctccatctatttt-tcccctttcttttgatacaaataagtgattttcacatatat 215  Q
    ||||||||| |||||| |||  |||||| | |||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||| |||||||||    
T  5775052 gaagatgtgattttatgtcatttttttttacctagaatcacccctctccatctattttcccccctttcttttgatataaataagtgatttccacatatat 5775151  T
Q  216 caagnnnnnnnnncatgatttcgtcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgttg 315  Q
    ||||         ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5775152 caag---ttttttcatgatttcgtcgtcgtctgagtgcggcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgttg 5775248  T
Q  316 tttggttcat 325  Q
    ||||||||||    
T  5775249 tttggttcat 5775258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 35132778 - 35132892
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    ||||||||| |||||| ||  ||| |||||  ||| ||||||| |||||||||||||||| ||||| ||||||||||||||||| ||  |||||||||||    
T  35132778 tctttcactcatcgaggaggggtgattttaggtcaatttttgacctagaatcacccctctacatct-tttttcccctttcttttaatctaaataagtgat 35132876  T
Q  204 tttcacatatatcaag 219  Q
    ||||||||| ||||||    
T  35132877 tttcacatacatcaag 35132892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 34899850 - 34899756
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| |||||||| |||||||  ||  ||||||||| ||||||||| |||||||    
T  34899850 gtggttttaggtcattttttgacctagaatcacccctctacatctttttttcccttttctttcaatctaaataagtggttttcacatctatcaag 34899756  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 22742801 - 22742879
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||| |||||||||||||||||| ||||| ||||||||||||||||  ||  |||||||||||||||||||| ||||||    
T  22742801 tttttaatctagaatcacccctctgcatct-tttttcccctttctttcaatctaaataagtgattttcacatacatcaag 22742879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 8013708 - 8013647
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttt 186  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||| |||||||| |||||||    
T  8013708 gtggttttagatcattttttgacctagaatcacccctctacatctttttttcccttttcttt 8013647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 30757062 - 30756970
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatca 217  Q
    |||||||||  | ||||||||| |||||||||||||||| ||||| |||| ||| |||||||  ||  ||||||||||||||||||| |||||    
T  30757062 gtggttttaggtaattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtgattttcacatctatca 30756970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 41553559 - 41553492
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgtt 306  Q
    |||||| ||||||||| ||||||||||||| ||||||| || | | ||||||||||||||||||||||    
T  41553559 tcgtcgcctgagtgcaacgttgtgttgttcgtcgtcttgtgtgacgttatttgatttcgcgtcttgtt 41553492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 41553904 - 41553837
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgtt 306  Q
    |||||| ||||||||| ||||||||||||| ||||||| || | | ||||||||||||||||||||||    
T  41553904 tcgtcgcctgagtgcaacgttgtgttgttcgtcgtcttgtgtgacgttatttgatttcgcgtcttgtt 41553837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 41554249 - 41554182
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgtt 306  Q
    |||||| ||||||||| ||||||||||||| ||||||| || | | ||||||||||||||||||||||    
T  41554249 tcgtcgcctgagtgcaacgttgtgttgttcgtcgtcttgtgtgacgttatttgatttcgcgtcttgtt 41554182  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 298
Target Start/End: Complemental strand, 1749405 - 1749217
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    ||||||||| |||||| ||  ||| |||||  ||| ||||||| ||||||||||||  || ||||| ||||  ||||||||||  ||  |||||||||||    
T  1749405 tctttcactcatcgaggaggggtgattttaggtcaatttttgacctagaatcacccg-cttcatctttttt--ccctttctttcaatctaaataagtgat 1749309  T
Q  204 tttcacatatatcaagnnnnnnnnncatgatttcgtcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgc 298  Q
    ||||||||| ||||||         | ||||||||||||| |   |||||  ||||||||||||| ||||||| ||||||||| |||||||||||    
T  1749308 tttcacatacatcaagtttttctttcgtgatttcgtcgtctt---agtgcgacgttgtgttgttcgtcgtcttgtgcggcattgtttgatttcgc 1749217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 19404997 - 19404904
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| ||||| || |||||||  ||  ||||||||| |||||||||| ||||||    
T  19404997 gtggttttaggtcattttttgacctagaatcacccctctacatct-ttttttccttttctttcaatctaaataagtggttttcacataaatcaag 19404904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 37837701 - 37837612
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatat 215  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| |||||||| |||||||  ||  ||||||||| ||| |||||||||    
T  37837701 gtggttttaggtcattttttgacctagaatcacccctctacatct-tttttcccttttctttcaatctaaataagtggtttacacatatat 37837612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 24069516 - 24069444
Alignment:
Q  242 tcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    |||||||||||| |||||||||||||| | ||||| |||||| || |||||||| |||| ||||||| |||||    
T  24069516 tcgtctgagtgcggcgttgtgttgttcgttgtcttgtgcggcgttttttgatttggcgtattgttgcggtgtt 24069444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 325
Target Start/End: Complemental strand, 969556 - 969485
Alignment:
Q  255 gcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtg-ttgtttggttcat 325  Q
    |||||||||||||| ||||||| |||||| || |||||||| ||||||| |||| ||| |||||||||||||    
T  969556 gcgttgtgttgttcgtcgtcttttgcggcgttgtttgattttgcgtcttattgcggtgtttgtttggttcat 969485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 325
Target Start/End: Complemental strand, 3224535 - 3224448
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt-gtttggttcat 325  Q
    |||||||||||| || | |||||||||||| | ||||| |||| |||||||||||||| ||| |||||||  |||| |||||||||||    
T  3224535 tcgtcgtctgagggctgtgttgtgttgttcgtagtcttgtgcgacattatttgatttcacgttttgttgcgatgttcgtttggttcat 3224448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 9450379 - 9450289
Alignment:
Q  126 tggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatc 216  Q
    ||||||||  ||||||||||| |||||||||||| ||| |||||  ||| ||| |||||||  ||  ||||||||||||||||||| ||||    
T  9450379 tggttttaggtcattttttgacctagaatcacccatctacatcttgtttccccttttctttcaatctaaataagtgattttcacatctatc 9450289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 298
Target Start/End: Original strand, 48930657 - 48930794
Alignment:
Q  154 tcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaagnnnnnnnnncatgatttcgtcgtcgtctgagtgc 253  Q
    |||||||||| ||||| ||||||||||||||||  ||  |||||||||||||||||||| ||||||         |||||||   ||||||||| |||||    
T  48930657 tcacccctctacatct-tttttcccctttctttcaatctaaataagtgattttcacatacatcaag---ttttttcatgatt---tcgtcgtcttagtgc 48930749  T
Q  254 agcgttgtgttgttcatcgtcttatgcggcattatttgatttcgc 298  Q
      ||||||||| ||| ||||||| |||||| || |||||||||||    
T  48930750 gacgttgtgttattcgtcgtcttgtgcggcgttgtttgatttcgc 48930794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 13797173 - 13797081
Alignment:
Q  126 tggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||  ||||||||| | |||||||||||||||| ||||| |||| ||| |||||||  ||  |||||||||||||| |||| |||||||    
T  13797173 tggttttaggtcattttttaacctagaatcacccctctacatct-ttttccccttttctttcaatttaaataagtgattttaacatctatcaag 13797081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 19296726 - 19296782
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttccccttt 182  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  19296726 gtggttttaggtcattttttgacctagaatcacccctctacatct-tttttccccttt 19296782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 48317055 - 48316962
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaa 218  Q
    |||||||||  |||||||| || |||||||||||||||| ||||| |||  ||| |||||||  ||  ||||||||| ||||||||| ||||||    
T  48317055 gtggttttaggtcatttttggacctagaatcacccctctacatctttttcccccttttctttcaatttaaataagtggttttcacatctatcaa 48316962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 5078625 - 5078544
Alignment:
Q  136 tcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||||| |||||||||||||||| |||||  || || || || ||| |||  |||||||||||||| ||||||||||||    
T  5078625 tcattttttgacctagaatcacccctctgcatct--ttctctccattatttcgatctaaataagtgatttttacatatatcaag 5078544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 28476189 - 28476253
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtctt 303  Q
    ||||||||| |||||  ||||||||||||| ||||||| |||||| || ||||||||||| ||||    
T  28476189 tcgtcgtcttagtgcgacgttgtgttgttcgtcgtcttgtgcggcgttgtttgatttcgcatctt 28476253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 39171824 - 39171740
Alignment:
Q  136 tcattttttgatctagaatcacccctctccatc-tatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||||| |||||||||||||||| |||| | |||||||  ||||||| |||  ||||||||| |||||| || |||||||    
T  39171824 tcattttttgacctagaatcacccctctacatcttttttttcctttttctttcgatctaaataagtggttttcatatctatcaag 39171740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 24351071 - 24350993
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||| |||||||||||||| | ||||  |||||||| |||||||  ||  |||||||||||||||||||| ||||||    
T  24351071 tttttgacctagaatcacccctgtgcatccttttttccc-tttctttcaatctaaataagtgattttcacatacatcaag 24350993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 27997057 - 27997132
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||||||||| || ||||||||||| || |||| |||  |||| ||| |||| || |||||||||||||||    
T  27997057 tcgtcgtctgagtgcggcattgtgttgttcgtcatcttgtgcaacattgttttattttgcatcttgttgcagtgtt 27997132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 35665360 - 35665282
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaa 218  Q
    ||||||| |||||||||||||||| ||||| | ||| | |||||||| |||  |||||||||||||  | |||||||||    
T  35665360 tttttgacctagaatcacccctctgcatctttattttctctttctttcgatctaaataagtgatttcgaaatatatcaa 35665282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 24350966 - 24350909
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttc 296  Q
    ||||||||| |||||  ||||||||||||| ||||||| |||||| || |||||||||    
T  24350966 tcgtcgtcttagtgcgacgttgtgttgttcgtcgtcttgtgcggcgttgtttgatttc 24350909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 25255086 - 25255176
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatca 217  Q
    |||||||||  ||||||||||| ||| |||||||||| | ||||  ||||||||||||||||  ||  ||||||||  |||||||| ||||||    
T  25255086 gtggttttaggtcattttttgacctataatcacccctttgcatc--tttttcccctttctttcaatttaaataagttgttttcacacatatca 25255176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 30756941 - 30756869
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    ||||||||||||| |||| || |||||    
T  30756941 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc---gtttgatttcgcgttttgtcgcggtgtt 30756869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 42978456 - 42978513
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttccccttt 182  Q
    |||||||||  ||||||||||| ||||||||||| |||| ||||| ||| ||||||||    
T  42978456 gtggttttaggtcattttttgacctagaatcaccactctacatctttttctccccttt 42978513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 3394365 - 3394409
Alignment:
Q  171 tttttcccctttcttttgatacaaataagtgattttcacatatat 215  Q
    |||||||||||||||| |||  ||||||||||||||||| |||||    
T  3394365 tttttcccctttctttcgatctaaataagtgattttcacgtatat 3394409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 8001668 - 8001605
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgt 305  Q
    ||||||||| ||||| ||||| |||||||| ||||||| |||||| ||   ||||||||||||||||    
T  8001668 tcgtcgtctaagtgcggcgttttgttgttcgtcgtcttgtgcggcgtt---tgatttcgcgtcttgt 8001605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 12141430 - 12141367
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgt 305  Q
    ||||||||| ||||| ||||| |||||||  ||||||| |||||||||   ||||||||||||||||    
T  12141430 tcgtcgtctaagtgcggcgttttgttgtttgtcgtcttgtgcggcatt---tgatttcgcgtcttgt 12141367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 19296839 - 19296883
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggc 283  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    
T  19296839 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc 19296883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 26623909 - 26623830
Alignment:
Q  242 tcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtg-ttgtttggttc 323  Q
    |||||||||||| |||||||||||||| ||||||| | ||||    |||||||| || ||||||||| ||| |||||||||||    
T  26623909 tcgtctgagtgcggcgttgtgttgttcgtcgtcttgtacggc---gtttgattttgcatcttgttgcggtgtttgtttggttc 26623830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 34899729 - 34899685
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggc 283  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    
T  34899729 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc 34899685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 40993040 - 40993124
Alignment:
Q  136 tcattttttgatctagaatcacccctctccatctatttttcc-cctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||||| ||| |||||| ||||| ||||| ||||||| | |||||||  ||  ||||||||| ||||||||| |||||||    
T  40993040 tcattttttgacctaaaatcactcctctacatctttttttccacttttctttcaatctaaataagtggttttcacatctatcaag 40993124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 42978579 - 42978623
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggc 283  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    
T  42978579 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc 42978623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 47590176 - 47590253
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||| |||||||||||||||| ||| |  |||||||  ||||||  ||  ||||||||| |||||||||||||||||    
T  47590176 tttttgaactagaatcacccctctacattt--ttttccctattctttcaatctaaataagtggttttcacatatatcaag 47590253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 48061259 - 48061365
Alignment:
Q  114 atcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccc--tttcttttgatacaaataagtgattttcacat 211  Q
    |||||| ||| |||||||||  |||||||||||  |||||||||||| || ||| | |||||||||  |||||||  ||  ||||||||| |||||||||    
T  48061259 atcgaggagaggtggttttaggtcattttttgacttagaatcaccccactacatat-tttttcccctttttctttcaatctaaataagtggttttcacat 48061357  T
Q  212 atatcaag 219  Q
     |||||||    
T  48061358 ctatcaag 48061365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 34413376 - 34413247
Alignment:
Q  84 cttctctccaagttcttttt-tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttccccttt 182  Q
    |||||||| ||||| ||||| |||||||||||||||| ||  ||| |||||  ||| ||||| |||||||||||||||||| ||||| ||||||||||||    
T  34413376 cttctctctaagttttttttctctttcacttatcgagtaggggtgattttaggtcaattttttatctagaatcacccctctgcatctttttttccccttt 34413277  T
Q  183 cttttgatacaaataagtgattttcacata 212  Q
    ||||  ||  ||||||||||||||||||||    
T  34413276 ctttcaatctaaataagtgattttcacata 34413247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 45415395 - 45415502
Alignment:
Q  112 ttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacat 211  Q
    |||||||| ||  |||||||||  |||||||||||||||||||||||||||| ||||| |||| ||| |||||||  ||  ||||||||| |||||||||    
T  45415395 ttatcgaggaggggtggttttaggtcattttttgatctagaatcacccctctacatcttttttccccttttctttcaatttaaataagtggttttcacat 45415494  T
Q  212 atatcaag 219  Q
     |||||||    
T  45415495 ctatcaag 45415502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 49626738 - 49626852
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    ||||||||| |||||| ||  |||||||||  ||||| ||||| ||| |||||||||||| ||||| ||||||||||||||||  ||  |||||||||||    
T  49626738 tctttcactcatcgaggaggggtggttttaggtcattctttgacctaaaatcacccctctgcatct-tttttcccctttctttctatctaaataagtgat 49626836  T
Q  204 tttcacatatatcaag 219  Q
    ||||||| ||||||||    
T  49626837 tttcacaaatatcaag 49626852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 31984029 - 31984123
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||| |||| |||| ||||| |||||||| ||||||| |||  ||||||||| |||||||||||||||||    
T  31984029 gtggttttaggtcattttttgacctagaagcacctctctacatctttttttcccttttctttcgatctaaataagtggttttcacatatatcaag 31984123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 1742130 - 1742223
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||  ||| |||||||  ||  ||||||||| |||||||||||||||||    
T  1742130 gtggttttaggtcattttttgacctagaatcacccctctccatct-tttcccccttttctttcaatctaaataagtggttttcacatatatcaag 1742223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 18939160 - 18939263
Alignment:
Q  114 atcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatat 213  Q
    |||||| ||| |||||||||  ||||||||||||||||||||||| |||| ||||  ||||||||||||||||  ||  ||||||||  |||||||| ||    
T  18939160 atcgaggagaggtggttttaggtcattttttgatctagaatcacctctctgcatc--tttttcccctttctttcaatttaaataagtagttttcacacat 18939257  T
Q  214 atcaag 219  Q
    ||||||    
T  18939258 atcaag 18939263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 7337905 - 7337812
Alignment:
Q  126 tggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||| |||| | | |||||||  ||  ||||||||| ||||||||| |||||||    
T  7337905 tggttctatgtcattttttgatctagaatcacccctctacatcttttttcctcttttctttcaatctaaataagtggttttcacatctatcaag 7337812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 100 - 210
Target Start/End: Original strand, 34528543 - 34528650
Alignment:
Q  100 tttttctttcacttatcga-gaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataa 198  Q
    ||||||||||||| ||||| || || |||||||||| ||||||||||| |||||||||||||||| ||||   |||| |||||||||| |||  ||||||    
T  34528543 tttttctttcactcatcgaagatga-gtggttttatgtcattttttgacctagaatcacccctctgcatc---tttttccctttctttcgatctaaataa 34528638  T
Q  199 gtgattttcaca 210  Q
    ||||||| ||||    
T  34528639 gtgatttccaca 34528650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 15435113 - 15435022
Alignment:
Q  127 ggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||  ||||||||||||||||||||| |||||| ||||| |||||||| |||||||  ||  ||||||||| |||||||||| ||||||    
T  15435113 ggttttaggtcattttttgatctagaatcaaccctctacatct-tttttcccttttctttcaatctaaataagtgtttttcacataaatcaag 15435022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 47132870 - 47132945
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||||||||  |||||||||||||| |||| || |||||| || ||| ||||||||||||||||| |||||    
T  47132870 tcgtcgtctgagtggggcgttgtgttgttcgtcgttttgtgcggcgttgtttaatttcgcgtcttgttgcggtgtt 47132945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 8212149 - 8212059
Alignment:
Q  129 ttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||| || ||||||||||||| ||||||| |||| ||||| ||||| || |||||||  ||  ||||||||| |||||||||||||||||    
T  8212149 ttttagattattttttgatctacaatcacctctctacatcttttttttccttttctttaaatctaaataagtggttttcacatatatcaag 8212059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 45789415 - 45789498
Alignment:
Q  126 tggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacat 211  Q
    ||||||||  ||||||||||| |||||||||||||||| ||||  ||||||||||||||||  ||  ||||||||| |||||||||    
T  45789415 tggttttaggtcattttttgacctagaatcacccctctgcatc--tttttcccctttctttcaatttaaataagtggttttcacat 45789498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 23291874 - 23291792
Alignment:
Q  136 tcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||||| |||||||||||||||  ||||| |||||| | |||||||  ||  ||||||||| |||||||||||||||||    
T  23291874 tcattttttgacctagaatcacccctcgacatct-tttttctcttttctttcaatctaaataagtggttttcacatatatcaag 23291792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 940214 - 940307
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||| | |||||||||||| ||| |||||  ||| ||| |||||||| ||  ||||||||| |||||||||||||||||    
T  940214 gtggttttaagtcatttttt-acctagaatcacccatctgcatcttgtttccccttttcttttaatttaaataagtggttttcacatatatcaag 940307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 7837009 - 7836949
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttt 186  Q
    |||||||||  |||||||||||||||||||||||||||  ||||| |||||||| |||||||    
T  7837009 gtggttttaggtcattttttgatctagaatcacccctcgacatct-tttttcccttttcttt 7836949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 5983686 - 5983780
Alignment:
Q  126 tggttttatatcattttttgatctagaatcacccctctccatctatttttcccc--tttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||| |||||||||||| |||||||||| | ||| ||||| |||||||||  ||||||| |||  |||||| || ||||||||| |||||||    
T  5983686 tggttttagatcattttttgacctagaatcactcgtctacatct-tttttcccctttttctttcgatctaaataaatggttttcacatctatcaag 5983780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 24597520 - 24597472
Alignment:
Q  171 tttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||| ||||||||||| ||| |||||| ||||||||||||||||||||    
T  24597520 ttttttccctttcttttaatataaataaatgattttcacatatatcaag 24597472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 41994398 - 41994462
Alignment:
Q  243 cgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttg 307  Q
    ||||||| ||| |||||||||||||||||||||| ||| || || ||||||||||  ||||||||    
T  41994398 cgtctgaatgcggcgttgtgttgttcatcgtcttgtgcagcgttgtttgatttcggatcttgttg 41994462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 24582937 - 24583004
Alignment:
Q  258 ttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgttgtttggttcat 325  Q
    ||||||||||||||| ||| |||||| || |||||||| || ||||||||| |||||  |||||||||    
T  24582937 ttgtgttgttcatcgccttgtgcggcgttgtttgatttggcatcttgttgcggtgttcgttggttcat 24583004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 32679217 - 32679158
Alignment:
Q  242 tcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtc 301  Q
    |||||||||||| |||||||||||||| || |||| |||||| |  ||||||||||||||    
T  32679217 tcgtctgagtgcggcgttgtgttgttcgtcatcttgtgcggcgtagtttgatttcgcgtc 32679158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 36775938 - 36775866
Alignment:
Q  145 gatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||||||||||||| ||||  ||||| ||||||||||  ||  |||||| ||||||||||||| ||||||    
T  36775938 gatctagaatcacccctctgcatc--ttttttccctttctttcaatctaaataaatgattttcacatacatcaag 36775866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 569011 - 568936
Alignment:
Q  139 ttttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatc 216  Q
    |||||| | |||||||| ||||||| |||||  |||||||||||||||  ||  ||||||||||||||||| ||||||    
T  569011 tttttttacctagaatcccccctctacatct--ttttcccctttctttcaatctaaataagtgattttcacgtatatc 568936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 10776581 - 10776539
Alignment:
Q  241 gtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggc 283  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||    
T  10776581 gtcgtctaagtgcggcgttgtgttgttcgtcgtcttatgcggc 10776539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 10776703 - 10776653
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctattttt 175  Q
    ||||||||| |||||||||||| |||||||||||| ||| ||||| |||||    
T  10776703 gtggttttagatcattttttgacctagaatcacccatctacatcttttttt 10776653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 14872477 - 14872583
Alignment:
Q  114 atcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttccc-ctttcttttgatacaaataagtgattttcacata 212  Q
    ||||||||| |||||||||   |||||||||||  ||||||||| ||||| ||||| ||||||||  |||||||  ||  ||||||||| |||| ||| |    
T  14872477 atcgagaaggtgtggttttcggtcattttttgacttagaatcactcctctacatctttttttccctttttctttcaatgtaaataagtggtttttacaaa 14872576  T
Q  213 tatcaag 219  Q
    |||||||    
T  14872577 tatcaag 14872583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 19060877 - 19060963
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgttgtttggttcat 325  Q
    ||||||||| |||||  | ||||||||||| ||||||| || ||| || ||||||||  | |||||||||||||||  |||||||||    
T  19060877 tcgtcgtctaagtgcgaccttgtgttgttcgtcgtcttgtgtggcgttgtttgatttgacatcttgttgcagtgttcgttggttcat 19060963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 34878514 - 34878421
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||||||| | ||| ||||| |||||||  |||||||  ||  ||||||||| |||||||| ||||||||    
T  34878514 gtggttttaggtcattttttgacctagaatcactcatctacatct-tttttccattttctttcaatttaaataagtggttttcacacatatcaag 34878421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 44543240 - 44543326
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgttgtttggttcat 325  Q
    ||||||||| |||||  | ||||||||||| |||| ||||||||| || |||||||| || |||| |||| |||||  |||||||||    
T  44543240 tcgtcgtctaagtgcgactttgtgttgttcgtcgtattatgcggcgttgtttgatttggcatcttattgcggtgttcgttggttcat 44543326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 48750055 - 48750131
Alignment:
Q  141 ttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||| |||||||||| ||| | ||||| ||||||||||||||||  ||  |||||||||||||||||||| ||||||    
T  48750055 ttttgacctagaatcactcct-tgcatct-tttttcccctttctttcaatctaaataagtgattttcacatacatcaag 48750131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 16161801 - 16161858
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttc 296  Q
    ||||||||| |||||  ||||||||||||| ||||||| |||||| || |||||||||    
T  16161801 tcgtcgtcttagtgcgacgttgtgttgttcgtcgtcttgtgcggcgttgtttgatttc 16161858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 35484513 - 35484441
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||   | ||||| ||||||||||||| || |||||    
T  35484513 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcg---tcatttgctttcgcgtcttgtcgcggtgtt 35484441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 314
Target Start/End: Original strand, 43412343 - 43412416
Alignment:
Q  241 gtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||||||  | | |||||||||||||||||| |||| | |||||||| |||| ||||  ||||||||||    
T  43412343 gtcgtctgagtgatgtgctgtgttgttcatcgtcttttgcgacgttatttgagttcgtgtctaattgcagtgtt 43412416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 1742251 - 1742314
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgt 305  Q
    ||||||||| ||||| |||||||||||||| ||||||| |||| |    ||||||||||||||||||    
T  1742251 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcgac---gtttgatttcgcgtcttgt 1742314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 8212032 - 8211988
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggc 283  Q
    ||||||||| | ||| |||||||||||||||||||||| ||||||    
T  8212032 tcgtcgtctaaatgcggcgttgtgttgttcatcgtcttgtgcggc 8211988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 11462678 - 11462635
Alignment:
Q  138 attttttgatctagaatcacccctctccatctatttttccccttt 182  Q
    ||||||||| |||||||||||||||| ||||| ||||||||||||    
T  11462678 attttttgacctagaatcacccctctgcatct-tttttccccttt 11462635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 12635141 - 12635193
Alignment:
Q  243 cgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgattt 295  Q
    |||||| |||| |||||||||||||| ||||||| |||||| || ||||||||    
T  12635141 cgtctgtgtgcggcgttgtgttgttcgtcgtcttgtgcggcgttgtttgattt 12635193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 215
Target Start/End: Complemental strand, 31692727 - 31692618
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    ||||||||| |||||| |  |||| |||||  ||||||||||| || ||||||||||||| ||| | |||||  ||||||||| |||  || ||| ||||    
T  31692727 tctttcactcatcgaggatgtgtgattttaggtcattttttgaccttgaatcacccctctgcattttttttt--cctttctttcgatctaagtaattgat 31692630  T
Q  204 tttcacatatat 215  Q
    ||||||| ||||    
T  31692629 tttcacacatat 31692618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 39724949 - 39725017
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttg 307  Q
    ||||||||||||||  ||| ||| ||||||| ||||||| ||| |||| ||||||||| || |||||||    
T  39724949 tcgtcgtctgagtgtggcgatgttttgttcaacgtcttacgcgacattgtttgatttctcgccttgttg 39725017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 44543165 - 44543213
Alignment:
Q  171 tttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||| |||||||||| |||  |||||||||||||||||| ||||||||    
T  44543165 ttttttccctttctttcgatctaaataagtgattttcacaaatatcaag 44543213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 43)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 303
Target Start/End: Complemental strand, 10237477 - 10237282
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    ||||||||| |||||| ||| ||| |||||  ||| ||||||| |||||||||||||||| ||||| ||||||||||||||||  ||  |||||||||||    
T  10237477 tctttcactcatcgagtagaggtgattttaggtcaatttttgacctagaatcacccctctacatct-tttttcccctttctttcaatctaaataagtgat 10237379  T
Q  204 tttcacatatatcaagnnnnnnnnncatgatttcgtcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtctt 303  Q
    ||||||||| ||||||         | |||||   ||||||||| |||||  ||||||||||||| ||||||| ||| || || ||||||||||| ||||    
T  10237378 tttcacatacatcaagtttttctttcgtgatt---tcgtcgtcttagtgcgacgttgtgttgttcgtcgtcttgtgcagcgttctttgatttcgcatctt 10237282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 32448888 - 32448772
Alignment:
Q  101 ttttctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagt 200  Q
    |||||||||||| |||||| ||  |||||||||  ||||| ||||| ||| |||||||||||| |||||  ||||||||||||||| |||  ||||||||    
T  32448888 ttttctttcactcatcgaggaggggtggttttaggtcattatttgacctaaaatcacccctctgcatct--ttttcccctttctttcgatctaaataagt 32448791  T
Q  201 gattttcacatatatcaag 219  Q
    |||||||||  ||||||||    
T  32448790 gattttcaccaatatcaag 32448772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 1415421 - 1415514
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  | |||||||||||||||||||||||||| ||||| |||||||| |||||||  ||  |||||||||||||||||| ||||||||    
T  1415421 gtggttttaggttattttttgatctagaatcacccctctacatct-tttttcccttttctttcaatttaaataagtgattttcacacatatcaag 1415514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 4778609 - 4778703
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| |||||||| |||||||  ||  ||||||||| ||||||||| |||||||    
T  4778609 gtggttttaggtcattttttgacctagaatcacccctctacatctttttttcccttttctttcaatttaaataagtggttttcacatctatcaag 4778703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 18763313 - 18763409
Alignment:
Q  114 atcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacat 211  Q
    |||||| ||| |||||||||| ||||||||||| |||||||||||||||| ||||| |||||||| |||||||  ||  ||||||||| |||||||||    
T  18763313 atcgaggagaggtggttttatgtcattttttgacctagaatcacccctctacatct-tttttcccttttctttcaatctaaataagtggttttcacat 18763409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 7646328 - 7646415
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccc-tttcttttgatacaaataagtgattttcacat 211  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| |||  ||||||||| |||||||||    
T  7646328 gtggttttaggtcattttttgacctagaatcacccctctacatctttttttccccttttctttcgatctaaataagtggttttcacat 7646415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 29574754 - 29574679
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    |||||||| |||||| |||||||||||||| ||||||| ||||||||| ||||||||| | | |||||||||||||    
T  29574754 tcgtcgtccgagtgcggcgttgtgttgttcgtcgtcttgtgcggcattgtttgatttcacattttgttgcagtgtt 29574679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 43397373 - 43397270
Alignment:
Q  114 atcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatat 213  Q
    |||||||||  |||||||||  ||||||||||| ||||||||||| |||| ||||  |||||||| |||||||  ||  ||||||||| |||||||||||    
T  43397373 atcgagaaggggtggttttaggtcattttttgacctagaatcacctctctacatc--tttttcccttttctttcaatctaaataagtggttttcacatat 43397276  T
Q  214 atcaag 219  Q
    ||||||    
T  43397275 atcaag 43397270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 30400293 - 30400188
Alignment:
Q  114 atcgagaagatgtggttttatatcattttttgatctagaatcac-ccctctccatctatttttcccctttcttttgatacaaataagtgattttcacata 212  Q
    |||||||||| ||||||||| |||||||||||| ||| |||||| || ||| ||||| ||||| |  |||||||| ||  ||||||||| ||||||||||    
T  30400293 atcgagaagaggtggttttagatcattttttgacctaaaatcactccatctacatcttttttttctttttcttttaatctaaataagtgtttttcacata 30400194  T
Q  213 tatcaa 218  Q
    ||||||    
T  30400193 tatcaa 30400188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 37994145 - 37994223
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||| |||||||||||||||| ||| | | |||||||||||||| |||  |||||||||||||||||||| ||||||    
T  37994145 tttttgacctagaatcacccctctgcattt-tgtttcccctttctttcgatttaaataagtgattttcacatagatcaag 37994223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 38445037 - 38445116
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||||||||||||||||| ||||| |||| ||  |||||||  ||| ||||||||| ||||||||| |||||||    
T  38445037 tttttgatctagaatcacccctctacatcttttttccctttttctttcaatataaataagtggttttcacatctatcaag 38445116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 12648167 - 12648074
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||||||||||||  ||||| |||||| | |||||||  ||  ||||||||||||| |||||||||||||    
T  12648167 gtggttttaggtcattttttgacctagaatcacccctccacatct-tttttctcttttctttcaatctaaataagtgatttccacatatatcaag 12648074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 19062475 - 19062403
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| |||||||||||||||||||| ||||||| ||||||   |||||||||| ||||||||  |||||||    
T  19062475 tcgtcgtctaagtgcagcgttgtgttgttcgtcgtcttgtgcggc---atttgatttcacgtcttgtcacagtgtt 19062403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 31788325 - 31788406
Alignment:
Q  138 attttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||| |||||||||||||||| ||||| |||| ||  |||||||  ||  ||||||||||||||||||| |||||||    
T  31788325 attttttgacctagaatcacccctctacatcttttttcccattttctttcaatctaaataagtgattttcacatctatcaag 31788406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 12648043 - 12647971
Alignment:
Q  242 tcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    |||||| ||||| | |||||||||||| ||||||| |||||| || ||||||||| ||||||||||| |||||    
T  12648043 tcgtctaagtgcggtgttgtgttgttcgtcgtcttgtgcggcgttgtttgatttctcgtcttgttgcggtgtt 12647971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 41694453 - 41694563
Alignment:
Q  107 ttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgatttt 206  Q
    |||||| ||||||||||||| ||||||  |||||||||||| || ||||| |  ||| ||||| ||||||||||| ||||||||  |||||||| | |||    
T  41694453 ttcactcatcgagaagatgtagttttaggtcattttttgatttaaaatcatcattcttcatct-tttttccccttacttttgatctaaataagt-agttt 41694550  T
Q  207 cacatatatcaag 219  Q
    ||||| |||||||    
T  41694551 cacatttatcaag 41694563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 3308810 - 3308888
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||| |||||||||||||| | ||||| |||||||||||| |||  ||  |||||||||||||||||||| ||||||    
T  3308810 tttttgacctagaatcacccctttgcatct-tttttcccctttatttcaatctaaataagtgattttcacatacatcaag 3308888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 4098970 - 4099053
Alignment:
Q  136 tcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||||| |||||||||||| ||| ||||| |||| ||| |||||||  ||  ||||||||| ||||||||| |||||||    
T  4098970 tcattttttgacctagaatcacccatctacatcttttttccccttttctttcaatctaaataagtggttttcacatctatcaag 4099053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 9169486 - 9169407
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||| |||||||||||||||| ||| | |||||||| |||||||  ||  ||||||||| ||||||||| |||||||    
T  9169486 tttttgacctagaatcacccctctacatttttttttcccttttctttcaatctaaataagtggttttcacatctatcaag 9169407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 14955358 - 14955472
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    ||||||||| |||||| ||  ||| |||||  ||| ||||||| ||||||||| |||||| ||||| ||||||| ||||||||  ||  |||||||||||    
T  14955358 tctttcactcatcgaggaggggtgattttaagtcaatttttgacctagaatcatccctctgcatct-tttttcctctttctttcaatctaaataagtgat 14955456  T
Q  204 tttcacatatatcaag 219  Q
    || |||||| ||||||    
T  14955457 ttccacatacatcaag 14955472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 29574897 - 29574783
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    |||||||||  ||||| ||  ||||||||| |||||||||||| ||||||||| |||| | ||||  |||||||  |||||||  ||  |||||||||||    
T  29574897 tctttcactcgtcgaggaggggtggttttagatcattttttgacctagaatca-ccctgtgcatccttttttccattttctttcaatctaaataagtgat 29574799  T
Q  204 tttcacatatatcaag 219  Q
    || |||||||||||||    
T  29574798 ttccacatatatcaag 29574783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 37994253 - 37994328
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    |||| |||||||||| |||||||||||||| || || | | ||||||| |||||||| || |||||||||||||||    
T  37994253 tcgttgtctgagtgcggcgttgtgttgttcgtcttcctgtacggcattgtttgattttgcatcttgttgcagtgtt 37994328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 11985473 - 11985380
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||| | |||||||||||||||| || || |||| ||| |||||||  ||  ||||||||| |||||||||||||||||    
T  11985473 gtggttttaagtcattttttaacctagaatcacccctctacaact-ttttccccttttctttcaatttaaataagtggttttcacatatatcaag 11985380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 19062595 - 19062502
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  | ||||||||| |||||||||||||||| ||||  |||||||| |||||||  ||  ||||||||| ||||||||| |||||||    
T  19062595 gtggttttaggttattttttgaactagaatcacccctctacatc-ctttttcccttttctttcaatctaaataagtggttttcacatctatcaag 19062502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 27097637 - 27097569
Alignment:
Q  136 tcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattt 205  Q
    ||||||||||| |||||||||||| ||| ||||| |||| ||| |||||||||||  |||||||||||||    
T  27097637 tcattttttgacctagaatcaccc-tctacatcttttttccccttttcttttgatctaaataagtgattt 27097569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 10929638 - 10929726
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcatt-atttgatttcgcgtcttgttgcagtgtt-gtttggttcat 325  Q
    ||||||||||||||| | |||||||||||| ||||||| | || | ||  |||||||| |||||||||||| ||||| |||||||||||    
T  10929638 tcgtcgtctgagtgcggtgttgtgttgttcgtcgtcttgtacgacgttgttttgatttagcgtcttgttgcggtgttcgtttggttcat 10929726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 38445143 - 38445187
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggc 283  Q
    ||||||||| |||||||||||||||||||| ||||||| ||||||    
T  38445143 tcgtcgtctaagtgcagcgttgtgttgttcgtcgtcttgtgcggc 38445187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 22538386 - 22538343
Alignment:
Q  271 cgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    |||||| |||||||||||||||||| | ||||||||||||||||    
T  22538386 cgtcttgtgcggcattatttgattttgagtcttgttgcagtgtt 22538343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 27097529 - 27097482
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcatt 286  Q
    ||||||||| ||||| |||||||||||||| ||||||| |||||||||    
T  27097529 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggcatt 27097482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 29173842 - 29173803
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttat 278  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  29173842 tcgtcgtctaagtgcggcgttgtgttgttcatcgtcttat 29173803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 314
Target Start/End: Complemental strand, 37876727 - 37876657
Alignment:
Q  241 gtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||| ||||| ||||| |||||||| ||||||| |||||||||   |||||||||||||||| || |||||    
T  37876727 gtcgtctaagtgcggcgttttgttgttcgtcgtcttgtgcggcatt---tgatttcgcgtcttgtcgcggtgtt 37876657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 4041837 - 4041744
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||  |||||  ||||| |||||||||||||||| ||| | |||||||| |||||||  ||  ||||||||| ||||||||| |||||||    
T  4041837 gtggttttggatcatactttgacctagaatcacccctctacat-tttttttcccgtttctttcaatctaaataagtggttttcacatctatcaag 4041744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 6358997 - 6358931
Alignment:
Q  241 gtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttg 307  Q
    ||||||||||||   ||||||||||||| ||||||| ||| || || ||||||||||| ||||||||    
T  6358997 gtcgtctgagtgtgtcgttgtgttgttcgtcgtcttgtgcagcgttgtttgatttcgcatcttgttg 6358931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 7448104 - 7448197
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||  |||||||||||||||| ||||| |||| ||| |||||||  ||  |||||| || ||||||||| |||||||    
T  7448104 gtggttttaggtcattttttgtcctagaatcacccctctacatct-ttttccccttttctttcaatctaaataaatggttttcacatctatcaag 7448197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 7677996 - 7677935
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtctt 303  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    ||||||||||||||||    
T  7677996 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc---gtttgatttcgcgtctt 7677935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 7678121 - 7678071
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctattttt 175  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| |||||    
T  7678121 gtggttttaggtcattttttgacctagaatcacccctctacatcttttttt 7678071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 19029135 - 19029066
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcaca 210  Q
    ||||||| |||||||||||| ||||||||| |||| ||||||  ||| |||  ||||||||||||||||||    
T  19029135 tttttgacctagaatcacccatctccatct-ttttaccccttcttttcgatctaaataagtgattttcaca 19029066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 325
Target Start/End: Complemental strand, 32448744 - 32448658
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgttgtttggttcat 325  Q
    ||||||||| |||||  | ||||||||||| ||||||| |||| | || |||||||| || ||||||||| |||||  |||||||||    
T  32448744 tcgtcgtctaagtgcgaccttgtgttgttcgtcgtcttgtgcgccgttgtttgatttggcatcttgttgcggtgttcgttggttcat 32448658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 36943367 - 36943273
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| ||||||||||| |||| ||||| |||| | | |||||||  ||  ||||||||  ||||||||| |||||||    
T  36943367 gtggttttaggtcattttttgacctagaatcaccactctacatcttttttcctcttttctttcaatctaaataagtagttttcacatctatcaag 36943273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 34128810 - 34128725
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtg-ttgtttggttc 323  Q
    ||||||||||||||| | ||| |||||||| ||||||| |||| | || |||||||  |||||||||||  ||| |||||||||||    
T  34128810 tcgtcgtctgagtgcggtgttatgttgttcgtcgtcttgtgcgacgttgtttgattgtgcgtcttgttgtggtgtttgtttggttc 34128725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 36943244 - 36943172
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    ||||||||||||| |||| || |||||    
T  36943244 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc---gtttgatttcgcgtattgtcgcggtgtt 36943172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 1421542 - 1421624
Alignment:
Q  139 ttttttgatctagaatcacccctctccatctattttt---cccctttcttttgatacaaataagtgattttcacatatatcaa 218  Q
    ||||||||| ||||||||||||||| ||||| |||||   ||| |||||||  ||  ||||||||| ||||||||| ||||||    
T  1421542 ttttttgatatagaatcacccctctacatcttttttttcccccttttctttcaatctaaataagtggttttcacatctatcaa 1421624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 35220184 - 35220228
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatct 169  Q
    |||||||||  | ||||||||| ||||||||||||||||||||||    
T  35220184 gtggttttaggttattttttgacctagaatcacccctctccatct 35220228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 239 - 325
Target Start/End: Complemental strand, 51888336 - 51888249
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt-gtttggttcat 325  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | || ||||||||||| ||||||||| ||||| |||||||||||    
T  51888336 tcgttgtctgagtgcggcgttgtgttgttcatcgtcttatgcgacgttgtttgatttcgcatcttgttgcggtgttcgtttggttcat 51888249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 9643244 - 9643338
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctattttt--cccctttcttttgatacaaataagtgattttcacatatatca 217  Q
    |||||||||| ||||||||||| |||||||||| | ||| ||||| |||||  ||| ||||||| |||  |||||||||||||||||||||||||    
T  9643244 gtggttttatgtcattttttgacctagaatcactcatctgcatctttttttttcccatttctttcgatctaaataagtgattttcacatatatca 9643338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 51888480 - 51888366
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    ||||||||| |||||| ||  |||||||||  |||||||||||  | |||||||||||||| |||| ||| |||||||||||  |||  ||| |||||||    
T  51888480 tctttcactcatcgaggaggggtggttttaggtcattttttgacattgaatcacccctctcaatct-tttatcccctttcttccgatctaaacaagtgat 51888382  T
Q  204 tttcacatatatcaag 219  Q
    ||||||||||||||||    
T  51888381 tttcacatatatcaag 51888366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 36161563 - 36161670
Alignment:
Q  108 tcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttc 207  Q
    ||||| |||||| ||| |||||||||  ||||||||||| |||||||||||| ||| |||   |||||||| |||||||  ||  ||||||||||||||     
T  36161563 tcactcatcgaggagaggtggttttaggtcattttttgacctagaatcacccatctgcat---tttttcccatttctttcaatctaaataagtgattttt 36161659  T
Q  208 acatatatcaa 218  Q
    |||||||||||    
T  36161660 acatatatcaa 36161670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 22300833 - 22300908
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    |||||||||| ||||  ||||||||||||| ||||||| |||||| || |||||||||||||| |||||| |||||    
T  22300833 tcgtcgtctgtgtgcgacgttgtgttgttcgtcgtcttgtgcggcgttgtttgatttcgcgtcctgttgcggtgtt 22300908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 37683878 - 37683949
Alignment:
Q  243 cgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||||| |||||||||||||||||||||| ||  |  || ||||||||||||||||||||| |||||    
T  37683878 cgtctgagtgcggcgttgtgttgttcatcgtcttgtgtagagttgtttgatttcgcgtcttgttgcggtgtt 37683949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 2520643 - 2520737
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| |||| ||| |||| ||  ||  ||||||||| ||||||||| |||||||    
T  2520643 gtggttttaggtcattttttgacctagaatcacccctctacatcttttttccccttttcgttcaatctaaataagtggttttcacatctatcaag 2520737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 4142997 - 4142904
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| |||| ||| |||||||  ||  ||||||||| ||||||||| |||||||    
T  4142997 gtggttttaggtcattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtg-ttttcacatctatcaag 4142904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 24099325 - 24099219
Alignment:
Q  114 atcgagaagatgtggttttatatcatttttt-gatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacata 212  Q
    |||||| ||| |||||||||  ||||||||| || ||||||||| |||||| ||||| |||| ||| |||||||  ||  |||||||||||||||||||     
T  24099325 atcgaggagaggtggttttaggtcatttttttgacctagaatcatccctctacatcttttttccccttttctttcaatctaaataagtgattttcacatc 24099226  T
Q  213 tatcaag 219  Q
    |||||||    
T  24099225 tatcaag 24099219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 32766380 - 32766474
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| |||| ||| |||||||  ||  || |||||| ||||||||| |||||||    
T  32766380 gtggttttaggtcattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaagtaagtgtttttcacatctatcaag 32766474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 43510065 - 43510159
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||||||| ||||| ||||| |||||||| |||||||  ||  |||||||||  |||||||| |||||||    
T  43510065 gtggttttaggtcattttttgacctagaatcactcctctacatctttttttcccttttctttcaatctaaataagtggctttcacatttatcaag 43510159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 53810894 - 53810988
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| ||| |||||||||||| ||||| |||  ||| |||||||  ||  ||||||||||||||||||| |||||||    
T  53810894 gtggttttaggtcattttttgacctataatcacccctctacatctttttcccccttttctttcaatttaaataagtgattttcacatctatcaag 53810988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 298
Target Start/End: Original strand, 27651829 - 27651983
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaagnnnnnnnnncatgatttcgt 239  Q
    ||||||| |||| ||||||| ||| ||||| |||||||| |||||||  ||  |||||||||||||||||||| ||||||         | |||||   |    
T  27651829 tttttgacctaggatcacccatctgcatct-tttttcccatttctttcaatctaaataagtgattttcacatacatcaagtttttctttcgtgatt---t 27651924  T
Q  240 cgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgc 298  Q
    |||||||| |||||| ||||||||||||| ||||||| |||||  || |||||||||||    
T  27651925 cgtcgtcttagtgcaacgttgtgttgttcgtcgtcttgtgcggtgttgtttgatttcgc 27651983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 298
Target Start/End: Original strand, 36194558 - 36194748
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    |||||||||||||||| |   ||| ||||| |||| ||||||| ||| || || |||||| ||||| |||||| |||||||||  ||  |||||||||||    
T  36194558 tctttcacttatcgaggatgggtgattttagatcaatttttgacctaaaaacatccctctgcatct-tttttctcctttctttcaatttaaataagtgat 36194656  T
Q  204 tttcacatatatcaagnnnnnnnnncatgatttcgtcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgc 298  Q
    ||||||||| ||||||         | |||||   |||| |||| |||||  ||||||||||||| ||||||| |||||| || |||||||||||    
T  36194657 tttcacatacatcaagtttttctttcgtgatt---tcgttgtcttagtgcgacgttgtgttgttcgtcgtcttgtgcggcgttgtttgatttcgc 36194748  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 21225417 - 21225358
Alignment:
Q  126 tggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttt 186  Q
    ||||||||  ||||||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  21225417 tggttttaggtcattttttgatctaaaatcacctctctccatct-tttttcccctttcttt 21225358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 9643372 - 9643459
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt-gtttggttcat 325  Q
    |||||||| ||||||  ||||||||||||| |||||||  ||| | || ||||||||| | ||||||||||||||| |||||||||||    
T  9643372 tcgtcgtccgagtgcgacgttgtgttgttcgtcgtcttgagcgacgttgtttgatttctcatcttgttgcagtgttcgtttggttcat 9643459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 18935668 - 18935745
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||| |||||||||||| ||| ||||| ||||||||||||||||| ||  |||| ||||||||||||||| ||||||    
T  18935668 tttttgacctagaatcaccc-tctgcatct-tttttcccctttcttttaatctaaattagtgattttcacatacatcaag 18935745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 35348183 - 35348265
Alignment:
Q  136 tcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||||| ||||||||||| |||| ||||| |||||||| |||||||  ||  ||||||||| |||||||| ||||||||    
T  35348183 tcattttttgacctagaatcacctctctacatct-tttttcccttttctttcaatctaaataagtggttttcacaaatatcaag 35348265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 47320665 - 47320551
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    |||||| || |||||||||  |||||||||  ||||| |||||  || ||||||  |||| ||||| ||||||||||||| || |||  |||||||||||    
T  47320665 tctttcgctcatcgagaaggggtggttttaggtcattctttgacttaaaatcacaactctgcatct-tttttcccctttcgttcgatctaaataagtgat 47320567  T
Q  204 tttcacatatatcaag 219  Q
    ||||||| ||||||||    
T  47320566 tttcacaaatatcaag 47320551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 52944295 - 52944370
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    |||| |||||||||| |||||||||||||| |||| || |||||| || ||| |||| |||||||||||| |||||    
T  52944295 tcgtagtctgagtgcggcgttgtgttgttcgtcgttttgtgcggcgttgtttaattttgcgtcttgttgcggtgtt 52944370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 9634563 - 9634632
Alignment:
Q  148 ctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatca 217  Q
    ||||||||| || ||| ||||| |||||| | ||||||| |||  |||||||||||||||||||||||||    
T  9634563 ctagaatcatccatctgcatctttttttctcatttctttcgatctaaataagtgattttcacatatatca 9634632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 22300664 - 22300804
Alignment:
Q  79 tccaacttctctccaagttcttttt-tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcc 177  Q
    ||||||||||||| || || | ||| |||||||||  ||||| ||  |||||||||  ||||||||||| ||| |||||||||| | ||||  ||||||     
T  22300664 tccaacttctctctaaattttatttctctttcactcgtcgaggaggagtggttttaggtcattttttgacctaaaatcacccctttgcatcc-tttttct 22300762  T
Q  178 cctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    | |||||||  ||  ||||||||||||||||| |||||||||    
T  22300763 cttttctttcaatttaaataagtgattttcacgtatatcaag 22300804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 26633793 - 26633721
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||   ||| || |||||||||||| ||||||||    
T  26633793 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc---attggacttcgcgtcttgtcgcagtgtt 26633721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 5119204 - 5119299
Alignment:
Q  125 gtggttttatatcattttttg-atctagaatcacccctctccatctatttttcccct-ttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||| |||||||||  | |||||||||||||||| ||||| |||| ||||| ||||||  ||  ||||||||| |||||||||||||||||    
T  5119204 gtggttttatgtcattttttttacctagaatcacccctctacatct-ttttccccctcttctttcaatctaaataagtggttttcacatatatcaag 5119299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 9713788 - 9713867
Alignment:
Q  139 ttttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||| | ||||||||||  |||| ||||| ||||||||||||||||  ||  ||||||||||||| |||||||||||||    
T  9713788 tttttttacctagaatcacttctctacatct-tttttcccctttctttcaatctaaataagtgatttccacatatatcaag 9713867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 21686470 - 21686390
Alignment:
Q  139 ttttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||| ||| |||||||||||| ||||| |||| ||| |||||||  ||  ||||||||| ||||||||| |||||||    
T  21686470 ttttttgacctaaaatcacccctctacatcttttttccccttttctttcaatctaaataagtggttttcacatctatcaag 21686390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 22039062 - 22038950
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    ||||||||| |||||| ||  |||||||||  ||| |||| ||||||||||||||| | | ||||| ||||  ||||||||||  ||  |||||||||||    
T  22039062 tctttcactcatcgagcaggggtggttttaggtcaattttggatctagaatcaccctt-tgcatctttttt--ccctttctttctatctaaataagtgat 22038966  T
Q  204 tttcacatatatcaag 219  Q
    |||||||| |||||||    
T  22038965 tttcacatctatcaag 22038950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 28857389 - 28857461
Alignment:
Q  242 tcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    |||||| ||||| |||||||||||||| | ||||| |||||| || ||||||| ||||||| ||||| |||||    
T  28857389 tcgtctaagtgcggcgttgtgttgttcgttgtcttgtgcggcgttgtttgattccgcgtctagttgcggtgtt 28857461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 19853634 - 19853587
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcatt 286  Q
    ||||||||| ||||| |||||||||||||| |||||||||| ||||||    
T  19853634 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttatgtggcatt 19853587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 19853740 - 19853661
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||| |||||||||||||||| ||||| |||| ||| ||||||   ||  ||||||||| ||||||||| |||||||    
T  19853740 tttttgacctagaatcacccctctacatcttttttccccttttcttccaatctaaataagtggttttcacatctatcaag 19853661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 22611064 - 22611143
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||| |||||||||||| ||| ||||| |||| ||| |||||||  ||  ||||||||| ||||||||| |||||||    
T  22611064 tttttgacctagaatcacccatctacatcttttttccccttttctttcaatctaaataagtggttttcacatctatcaag 22611143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 56040874 - 56040793
Alignment:
Q  139 ttttttgatctagaatcacccctctccatctatttttcccct--ttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||| |||||||||||||||| ||||| ||||||||||  ||||||  ||  ||||||||| ||||||||| |||||||    
T  56040874 ttttttgacctagaatcacccctctacatct-tttttccccttcttctttcaatctaaataagtggttttcacatctatcaag 56040793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 9178234 - 9178312
Alignment:
Q  136 tcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatata 214  Q
    ||||||||||| |||||||||||| ||| ||||| ||| |||| |||||||  ||  |||||| || ||||||||||||    
T  9178234 tcattttttgacctagaatcacccttctacatctttttctcccttttctttcaatctaaataaatggttttcacatata 9178312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 21231678 - 21231628
Alignment:
Q  126 tggttttatatcattttttgatctagaatcacccctctccatctatttttc 176  Q
    ||||||||  ||||||||||||||| ||||||| |||||||||| ||||||    
T  21231678 tggttttaggtcattttttgatctaaaatcacctctctccatctttttttc 21231628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 43853445 - 43853495
Alignment:
Q  258 ttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgc 308  Q
    |||||||||||||| |||| |||||| || ||||||||||||| |||||||    
T  43853445 ttgtgttgttcatcatcttgtgcggcgttgtttgatttcgcgtattgttgc 43853495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 45418392 - 45418486
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| ||||||||| |||||| || || |||| | | ||||| |  ||| ||||||| | |||||||||||||||||    
T  45418392 gtggttttaggtcattttttgacctagaatcatccctctacacctcttttcctcttttctctcaatataaataagaggttttcacatatatcaag 45418486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 52934066 - 52934000
Alignment:
Q  242 tcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgc 308  Q
    |||||||||||| |||||||||||||| || | || ||| || || ||||||||||| |||||||||    
T  52934066 tcgtctgagtgcggcgttgtgttgttcgtcattttgtgcagcgttgtttgatttcgcatcttgttgc 52934000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 52944193 - 52944266
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatata 214  Q
    ||||||||||| ||||| ||||||  ||| ||||||||| |||||||  ||  ||||||||||||||||||||||    
T  52944193 tttttgatctaaaatcatccctctgtatc-atttttcccttttctttcaatctaaataagtgattttcacatata 52944266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 7009226 - 7009123
Alignment:
Q  114 atcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatat 213  Q
    |||||||||||||||||||| ||||  |||||  ||||||||||| |||   |||| |||||||| ||||||| ||| | ||||| |||||| ||||||     
T  7009226 atcgagaagatgtggttttagatcaacttttggcctagaatcacctctccgaatct-tttttcccttttctttcgat-ctaataactgatttccacatac 7009129  T
Q  214 atcaag 219  Q
    ||||||    
T  7009128 atcaag 7009123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 9165297 - 9165196
Alignment:
Q  114 atcgagaagatgtggttttatatcat-tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacata 212  Q
    |||||| ||| |||||||||  |||| ||||| | |||||||||||||||| ||||| ||| |||| | |||||  ||  ||||||||| ||||||||||    
T  9165297 atcgaggagaggtggttttaggtcatattttttacctagaatcacccctctacatctttttctcccttatctttcaatctaaataagtggttttcacata 9165198  T
Q  213 ta 214  Q
    ||    
T  9165197 ta 9165196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 12199815 - 12199743
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||||||||  ||||||||||||||||||| || ||| ||    |||||||| |||||||||||| |||||    
T  12199815 tcgtcgtctgagtgtggcgttgtgttgttcatcgttttgtgcagc---ttttgattttgcgtcttgttgcggtgtt 12199743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 22558708 - 22558613
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccc--tttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  |||||||||||  |||||||||| |||| ||||| |||||||||  |||||||  ||  ||||||||| ||||||||| |||||||    
T  22558708 gtggttttaggtcattttttgacatagaatcacctctctacatct-tttttcccctttttctttcaatctaaataagtggttttcacatctatcaag 22558613  T

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Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 33920949 - 33921011
Alignment:
Q  155 cacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||| ||| ||||| |||||||| |||||||  |||  ||||||||||||||||||||||||||    
T  33920949 cacccatctacatctttttttcccttttctttcaata--aataagtgattttcacatatatcaag 33921011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 33921038 - 33921110
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| ||||| ||||||||||||||  ||||||||||| |    ||||||||| |||||||| ||||||||    
T  33921038 tcgtcgtctaagtgcggcgttgtgttgttcgccgtcttatgcgac---gtttgatttcacgtcttgtcgcagtgtt 33921110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 35395795 - 35395758
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtctt 276  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  35395795 tcgtcgtctgagtgcggcgttgtgttgttcgtcgtctt 35395758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 1621707 - 1621647
Alignment:
Q  159 cctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||| ||||| ||||||||||||| ||  ||  |||||||||||||||||||| ||||||    
T  1621707 cctctgcatctttttttcccctttcattcaatctaaataagtgattttcacatacatcaag 1621647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 4142877 - 4142833
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggc 283  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    
T  4142877 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc 4142833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 22611170 - 22611214
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggc 283  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    
T  22611170 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc 22611214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 33332696 - 33332628
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttg 307  Q
    |||||||||| |||| |||||||||||||  ||| ||| |||| | || ||||||||||| ||||||||    
T  33332696 tcgtcgtctgtgtgcggcgttgtgttgtttgtcgccttgtgcgacgttgtttgatttcgcatcttgttg 33332628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 35348294 - 35348338
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggc 283  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    
T  35348294 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc 35348338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 48257692 - 48257648
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatct 169  Q
    |||||||||| ||||||||||| |||||||||||| ||| |||||    
T  48257692 gtggttttatgtcattttttgacctagaatcacccatctacatct 48257648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 40556557 - 40556651
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||||||||||||  ||||| |||||||| |||||||||||| ||||||||| |||||| || |||||||    
T  40556557 gtggttttaggtcattttttgacctagaatcacccctccacatctttttttcccttttcttttgatataaataagtggttttcatatctatcaag 40556651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 47042295 - 47042203
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatca 217  Q
    |||||||||  ||||||||| | ||| |||||||||||| ||||| |||||||| |||||||  ||  |||||||||||||||||||||||||    
T  47042295 gtggttttaggtcattttttaacctataatcacccctctacatctttttttcccttttctttcaatttaaataagtgattttcacatatatca 47042203  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 215
Target Start/End: Original strand, 29239164 - 29239273
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    ||||||| || ||||||| | |||||||||  ||||||||||||||||||||||||| || ||||| |||||  ||||||||| |||  |||||| ||||    
T  29239164 tctttcatttgtcgagaa-aggtggttttaggtcattttttgatctagaatcacccc-ctacatctttttttttcctttctttagatctaaataaatgat 29239261  T
Q  204 tttcacatatat 215  Q
    ||||||||||||    
T  29239262 tttcacatatat 29239273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 33579714 - 33579804
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatc 216  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| |||||||  |||||||  ||  ||||||||||||||||||||||||    
T  33579714 gtggttttaagtcattttttgacctagaatcacccctctacatct-tttttccattttctttcaatctaaataagtgattttcacatatatc 33579804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 50194573 - 50194433
Alignment:
Q  79 tccaacttctctccaagttcttttt-tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcc 177  Q
    ||||||||||||| ||||| |  || |||||||||  ||||||||  ||||||||| |||||||||||| ||| ||||||| |||| ||||  |||||||    
T  50194573 tccaacttctctctaagttttcgttctctttcactcgtcgagaaggagtggttttagatcattttttgacctaaaatcacctctctgcatc-ctttttcc 50194475  T
Q  178 cctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    | | |||||  ||  ||||||||||||| |||||||||||||    
T  50194474 cttctctttcaatctaaataagtgatttccacatatatcaag 50194433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 7546414 - 7546550
Alignment:
Q  84 cttctctccaagttcttttt-tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatc-tatttttcccctt 181  Q
    |||||||| ||||| | ||| ||| ||||| |||||| ||  ||| |||||  ||| |||||||||||||||||||||||| |||| | ||||||||| |    
T  7546414 cttctctctaagttttctttctctctcactcatcgaggaggggtgattttaggtcaatttttgatctagaatcacccctctgcatcttttttttccccct 7546513  T
Q  182 tcttttgatacaaataagtgattttcacatatatcaa 218  Q
    |||||  ||  |||||||||||||||||||| |||||    
T  7546514 tctttcaatctaaataagtgattttcacatacatcaa 7546550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 8914529 - 8914644
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    ||||||||| |||||||||  ||| |||||  ||| ||||||| ||||||| |||||||| ||||| ||||| ||| || |||| ||  ||||||| |||    
T  8914529 tctttcactcatcgagaaggggtgattttaggtcaatttttgacctagaataacccctctgcatcttttttttcccctttttttaattaaaataagggat 8914628  T
Q  204 tttcacatatatcaag 219  Q
    ||||||||| ||||||    
T  8914629 tttcacatacatcaag 8914644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 325
Target Start/End: Complemental strand, 12947399 - 12947312
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt-gtttggttcat 325  Q
    ||||||| ||||||| || ||||||||||| ||||||| |||||| || ||||||||||| ||||||||  ||||| |||||||||||    
T  12947399 tcgtcgtttgagtgcggctttgtgttgttcgtcgtcttgtgcggcgttgtttgatttcgcatcttgttgtggtgttcgtttggttcat 12947312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 20465210 - 20465119
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||| |||||||| ||  ||||||||||||||||| |||  ||||||||||| |||  ||| |||||||||||||| ||||||||||||    
T  20465210 gtggttttatgtcattttt-gacatagaatcacccctctccctct--ttttcccctttttttcaatataaataagtgattttaacatatatcaag 20465119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 21290083 - 21289970
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    ||||||||| || ||| ||| ||| |||||  ||| ||||||| |||||||||||||||| ||||| ||||||||| ||||||  || ||||||||||||    
T  21290083 tctttcactcatggaggagaggtgattttaggtcaatttttgacctagaatcacccctctgcatct-tttttcccc-ttctttcaatccaaataagtgat 21289986  T
Q  204 tttcacatatatcaag 219  Q
    ||| ||||| ||||||    
T  21289985 tttaacatacatcaag 21289970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 29921910 - 29921992
Alignment:
Q  136 tcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||||| ||| ||||||  |||||||||| ||||||||||||||||  ||  ||||||||||||| |||||||||||||    
T  29921910 tcattttttgagctaaaatcacttctctccatct-tttttcccctttctttcaatctaaataagtgatttccacatatatcaag 29921992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 29971063 - 29971145
Alignment:
Q  136 tcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||||| ||| ||||||  |||||||||| ||||||||||||||||  ||  ||||||||||||| |||||||||||||    
T  29971063 tcattttttgagctaaaatcacttctctccatct-tttttcccctttctttcaatctaaataagtgatttccacatatatcaag 29971145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 219
Target Start/End: Complemental strand, 629169 - 629055
Alignment:
Q  105 ctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgatt 204  Q
    |||||||| |||||| ||  |||||||||  ||||| ||||| ||| ||||| || ||| ||||| ||||| ||| |||||| |||  ||||||||||||    
T  629169 ctttcactcatcgaggaggggtggttttaggtcattctttgacctaaaatcatccttctgcatcttttttttccccttctttcgatctaaataagtgatt 629070  T
Q  205 ttcacatatatcaag 219  Q
    |||||| ||||||||    
T  629069 ttcacaaatatcaag 629055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 10232916 - 10233010
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| |||| ||| |||||||  ||  ||||||||| ||||||| | |||||||    
T  10232916 gtggttttaggtcattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtggttttcacgtctatcaag 10233010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 323
Target Start/End: Original strand, 29239309 - 29239391
Alignment:
Q  242 tcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt-gtttggttc 323  Q
    |||||||||||| |||||||||||||| ||||||| ||||||  | ||||||||| ||||||||||  ||||| |||||||||    
T  29239309 tcgtctgagtgcggcgttgtgttgttcgtcgtcttgtgcggcgctgtttgatttcacgtcttgttgtggtgttcgtttggttc 29239391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 36461674 - 36461580
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| ||| | |||||||||| ||||| |||| ||| |||||||  ||  ||||||||||||||||||| |||||||    
T  36461674 gtggttttaggtcattttttgacctatattcacccctctacatcttttttccccttttctttcaatctaaataagtgattttcacatctatcaag 36461580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 47895997 - 47896091
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||| || |||||||||||| |||||||||||||||| ||||| ||||  |  |||||||  ||  ||||||||| |||||||||||||||||    
T  47895997 gtggttatagatcattttttgacctagaatcacccctctacatcttttttctctttttctttcaatctaaataagtggttttcacatatatcaag 47896091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 51303877 - 51303789
Alignment:
Q  129 ttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||| ||| ||||||| |||||||||||| ||| ||||| |||||||||||| |||  || ||||||||||||||||||||| ||||||    
T  51303877 ttttatgtcaatttttgacctagaatcaccc-tctgcatct-tttttcccctttttttcaatccaaataagtgattttcacatacatcaag 51303789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 325
Target Start/End: Complemental strand, 53807982 - 53807896
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgttgtttggttcat 325  Q
    ||||||||| |||||  | ||||||||||| ||||||| ||||||||| |||||||| || ||||||||| |||||  |||||||||    
T  53807982 tcgtcgtctaagtgcgaccttgtgttgttcgtcgtcttctgcggcattgtttgatttggcatcttgttgctgtgttcgttggttcat 53807896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 40487291 - 40487364
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| ||||| |||||||||||||| ||||||| |||||| |  |||||||||||||||||| || |||||    
T  40487291 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggcgt--tttgatttcgcgtcttgtcgcggtgtt 40487364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 6954928 - 6954845
Alignment:
Q  136 tcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||||| |||||||||||||||| ||||| |||| ||| |||||||  ||  |||||||||  |||||||| |||||||    
T  6954928 tcattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtgggtttcacatctatcaag 6954845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 9797773 - 9797678
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatc-tatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||||||||||||| |||| | |||||| | |||||||  ||  ||||||||| ||||||||| |||||||    
T  9797773 gtggttttaggtcattttttgacctagaatcacccctctacatcttttttttctcttttctttcaatctaaataagtggttttcacatctatcaag 9797678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 22290798 - 22290873
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatat 215  Q
    ||||||||||||||||| | || | ||||| |||| || ||||||||| ||  |||||||||||||||||||||||    
T  22290798 tttttgatctagaatcatctctttgcatcttttttccctctttcttttaatctaaataagtgattttcacatatat 22290873  T

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Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 52923344 - 52923266
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||| |||||||||||||||| ||||| |||||||| |||||||  ||  ||||||||| ||||||||| |||||||    
T  52923344 tttttgacctagaatcacccctctacatct-tttttcccttttctttcaatctaaataagtggttttcacatctatcaag 52923266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 25842641 - 25842707
Alignment:
Q  241 gtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttg 307  Q
    ||||| |||||||  |||||||||||||||| |||| ||||| ||| ||||||||| ||||||||||    
T  25842641 gtcgtttgagtgcgacgttgtgttgttcatcatcttctgcggtattgtttgatttctcgtcttgttg 25842707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 54148834 - 54148928
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| ||| |||||||||||| ||||| |||| | | |||||||  ||  ||||||||| ||||||||| |||||||    
T  54148834 gtggttttaggtcattttttgacctacaatcacccctctacatcttttttcctcttttctttcaatctaaataagtggttttcacatctatcaag 54148928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 36461553 - 36461481
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    |||||||||||||||||| || |||||    
T  36461553 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc---gtttgatttcgcgtcttgtcgcggtgtt 36461481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 41818194 - 41818243
Alignment:
Q  258 ttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttg 307  Q
    ||||||||||| ||||||| ||||| ||| ||||||||||||||||||||    
T  41818194 ttgtgttgttcgtcgtcttgtgcggtattgtttgatttcgcgtcttgttg 41818243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 43488712 - 43488640
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| ||||  |||||||||||||| ||||||| ||||||    ||||||||||||||||||||| |||||    
T  43488712 tcgtcgtctaagtgtggcgttgtgttgttcgtcgtcttgtgcggc---gtttgatttcgcgtcttgttgcggtgtt 43488640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 9998327 - 9998407
Alignment:
Q  139 ttttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||| |||||||||||||||| ||||| |||| ||| |||||||  ||  ||||||||| ||||||| | |||||||    
T  9998327 ttttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtggttttcacgtctatcaag 9998407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 35175367 - 35175451
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt-gtttggtt 322  Q
    ||||||||||||| |  | ||||||||||||||||||| ||| || || |||||||||  |||||||||| ||||| ||||||||    
T  35175367 tcgtcgtctgagtacgacattgtgttgttcatcgtcttgtgcagcgttgtttgatttcatgtcttgttgcggtgttcgtttggtt 35175451  T

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Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 43488819 - 43488739
Alignment:
Q  139 ttttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||| |||||||||||||||| ||||| |||| ||  |||||||  ||  ||||||||| ||||||||| |||||||    
T  43488819 ttttttgacctagaatcacccctctacatcttttttccctttttctttcaatctaaataagtggttttcacatctatcaag 43488739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 7546573 - 7546632
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgc 298  Q
    ||||||||| |||||  ||||||||||||| ||||||| |||||| || |||||||||||    
T  7546573 tcgtcgtcttagtgcgacgttgtgttgttcgtcgtcttgtgcggcgttgtttgatttcgc 7546632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 53508082 - 53508160
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||| ||| |||||||| ||| | ||| |||||||  |||||||  ||| |||||||||||||||||||||||||||    
T  53508082 tttttgacctaaaatcacccatctgcgtct-tttttcctttttctttcaatataaataagtgattttcacatatatcaag 53508160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 10108098 - 10108176
Alignment:
Q  141 ttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||| |||||||||||||||| ||||| |||| ||| |||||||  ||  ||||||||| ||||||| | |||||||    
T  10108098 ttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtggttttcacgtctatcaag 10108176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 25461126 - 25461060
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgt 305  Q
    ||||||| ||||||| ||||| |||||||| |||||||||||| | || |||||||| | |||||||    
T  25461126 tcgtcgtttgagtgcggcgttatgttgttcgtcgtcttatgcgacgttgtttgattttgtgtcttgt 25461060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 45568687 - 45568593
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||||||||||| | || ||| ||||| |||| ||| |||||||  ||  ||||||||  ||||||||| |||||||    
T  45568687 gtggttttaggtcattttttgatctagaataatccatctacatcttttttccccttttctttcaatctaaataagttgttttcacatctatcaag 45568593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 9998433 - 9998505
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    ||||||||||||| |||| || |||||    
T  9998433 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc---gtttgatttcgcgttttgtcgcggtgtt 9998505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 10108202 - 10108274
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    ||||||||||||| |||| || |||||    
T  10108202 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc---gtttgatttcgcgttttgtcgcggtgtt 10108274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 10233036 - 10233108
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    ||||||||||||| |||| || |||||    
T  10233036 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc---gtttgatttcgcgttttgtcgcggtgtt 10233108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 42460725 - 42460766
Alignment:
Q  255 gcgttgtgttgttcatcgtcttatgcggcattatttgatttc 296  Q
    |||||||||||||||||||||| |||||| || |||||||||    
T  42460725 gcgttgtgttgttcatcgtcttgtgcggcgttgtttgatttc 42460766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 48650978 - 48650921
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttccccttt 182  Q
    |||||||||  ||||||||||| ||| |||||||||||  ||||| ||||||||||||    
T  48650978 gtggttttaggtcattttttgacctaaaatcacccctcgacatctttttttccccttt 48650921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 3606739 - 3606807
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttg 307  Q
    ||||||||||||||| || ||||||||||| ||||||| || ||| || | |||| || ||||||||||    
T  3606739 tcgtcgtctgagtgcggcattgtgttgttcgtcgtcttgtgtggcgttgtatgatatcccgtcttgttg 3606807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 29249105 - 29249182
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||| ||||||||||  |||| |||||  |||||| ||||| || |||  ||||||||| |||||||||||||||||    
T  29249105 tttttgacctagaatcacttctcttcatct--ttttcctctttcgttcgatctaaataagtgtttttcacatatatcaag 29249182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 37040632 - 37040704
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacata 212  Q
    ||||||| |||||||||||||||| ||||| |||| ||  |||||||  ||  ||||||||| ||||||||||    
T  37040632 tttttgacctagaatcacccctctacatcttttttcccattttctttcaatctaaataagtggttttcacata 37040704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 40556678 - 40556722
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggc 283  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    
T  40556678 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc 40556722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 45568567 - 45568504
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgt 305  Q
    ||||||||| ||||| |||||||||||||| ||||||| || |||    ||||||||||||||||||    
T  45568567 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgtggc---gtttgatttcgcgtcttgt 45568504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 52116208 - 52116160
Alignment:
Q  171 tttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||| |||||| |||| ||  |||||||||||||||||||||||||||    
T  52116208 ttttttccctttgttttaatttaaataagtgattttcacatatatcaag 52116160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 43)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 324
Target Start/End: Complemental strand, 8443634 - 8443548
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt-gtttggttca 324  Q
    ||||||||| ||||| | |||||||||||| ||||||| |||||| || ||||||| ||||||||||||||||||| ||||||||||    
T  8443634 tcgtcgtctaagtgcggtgttgtgttgttcgtcgtcttgtgcggcgttgtttgattccgcgtcttgttgcagtgttcgtttggttca 8443548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 15344107 - 15344247
Alignment:
Q  79 tccaacttctctccaagttcttttt-tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcc 177  Q
    ||||||||||||| ||||| || || ||||||||| |||||| ||  |||||||||  ||||| ||||| ||| ||| |||||||| ||||| |||||||    
T  15344107 tccaacttctctctaagtttttcttctctttcactcatcgaggaggggtggttttaggtcattctttgacctaaaattacccctctgcatct-tttttcc 15344205  T
Q  178 cctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||| | | |||  |||||||||||||||||| ||||||||    
T  15344206 cctttatatggatctaaataagtgattttcacaaatatcaag 15344247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 15433172 - 15433312
Alignment:
Q  79 tccaacttctctccaagttcttttt-tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcc 177  Q
    ||||||||||||| ||||| || || ||||||||| |||||| ||  |||||||||  ||||| ||||| ||| ||| |||||||| ||||| |||||||    
T  15433172 tccaacttctctctaagtttttcttctctttcactcatcgaggaggggtggttttaggtcattctttgacctaaaattacccctctgcatct-tttttcc 15433270  T
Q  178 cctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||| | | |||  |||||||||||||||||| ||||||||    
T  15433271 cctttatatggatctaaataagtgattttcacaaatatcaag 15433312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 15524476 - 15524616
Alignment:
Q  79 tccaacttctctccaagttcttttt-tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcc 177  Q
    ||||||||||||| ||||| || || ||||||||| |||||| ||  |||||||||  ||||| ||||| ||| ||| |||||||| ||||| |||||||    
T  15524476 tccaacttctctctaagtttttcttctctttcactcatcgaggaggggtggttttaggtcattctttgacctaaaattacccctctgcatct-tttttcc 15524574  T
Q  178 cctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||| | | |||  |||||||||||||||||| ||||||||    
T  15524575 cctttatatggatctaaataagtgattttcacaaatatcaag 15524616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 18890967 - 18890861
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    |||||||||||||||||||  ||| |||||  ||| ||||||| |||||||||| | ||| ||||| ||||||||||||||||  ||  |||||||||||    
T  18890967 tctttcacttatcgagaaggggtgattttaggtcaatttttgacctagaatcactcatctgcatct-tttttcccctttctttcaatctaaataagtgat 18890869  T
Q  204 tttcacat 211  Q
    ||||||||    
T  18890868 tttcacat 18890861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 37971140 - 37971226
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacat 211  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| |||| ||| |||||||  ||  |||||||||||||||||||    
T  37971140 gtggttttaggtcattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtgattttcacat 37971226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 325
Target Start/End: Complemental strand, 1239519 - 1239433
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgttgtttggttcat 325  Q
    ||||||||| |||||  | ||||||||||||||||||| |||||| || |||||||| || ||||||||| |||||  |||||||||    
T  1239519 tcgtcgtctaagtgcgaccttgtgttgttcatcgtcttgtgcggcgttgtttgatttggcatcttgttgcggtgttcgttggttcat 1239433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 8826178 - 8826264
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgttgtttggttcat 325  Q
    ||||||||||||||||||||| |||||||| ||||||| || ||| || | ||| |||| |||||||||| ||||| |||| |||||    
T  8826178 tcgtcgtctgagtgcagcgttatgttgttcgtcgtcttgtgtggcgttgtgtgaattcgtgtcttgttgcggtgttctttgattcat 8826264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 20559985 - 20559893
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccc-tttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||| ||||||||| || |||||||||||||||| |||   ||||||||| |||||||  ||  ||||||||||||||||||| |||||||    
T  20559985 gtggttttagatcatttttggacctagaatcacccctctacat---tttttccccttttctttcaatctaaataagtgattttcacatctatcaag 20559893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 20571547 - 20571455
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccc-tttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||| ||||||||| || |||||||||||||||| |||   ||||||||| |||||||  ||  ||||||||||||||||||| |||||||    
T  20571547 gtggttttagatcatttttggacctagaatcacccctctacat---tttttccccttttctttcaatctaaataagtgattttcacatctatcaag 20571455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 1239644 - 1239553
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatca 217  Q
    |||||||||  || || ||||| ||| |||||||||||| ||||| ||||||||||||| || |||  |||||||||||||||||| ||||||    
T  1239644 gtggttttaggtccttctttgacctaaaatcacccctctgcatct-tttttcccctttcgttcgatctaaataagtgattttcacaaatatca 1239553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 8826035 - 8826151
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatca-cccctctccatctatttttcccctttcttttgatacaaataagtga 202  Q
    ||||||||| |||||| |   |||||||||  ||||||||||||||||||||| ||||| |  |||| |||| ||||||| ||| |||  ||||||||||    
T  8826035 tctttcactcatcgaggatgggtggttttaggtcattttttgatctagaatcaccccctttgtatcttttttccccctttatttcgatctaaataagtga 8826134  T
Q  203 ttttcacatatatcaag 219  Q
    |||| ||| ||||||||    
T  8826135 tttttacacatatcaag 8826151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 14585565 - 14585641
Alignment:
Q  143 ttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||| |||||||||||||||| ||||| |||||| | |||||||  ||  |||||||||||||||||||| ||||||    
T  14585565 ttgacctagaatcacccctctgcatctttttttctcttttctttcaatctaaataagtgattttcacatacatcaag 14585641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 29617379 - 29617312
Alignment:
Q  257 gttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt-gtttggttc 323  Q
    |||||||||||| ||||||| ||||||  | ||||||||||||||||||||| ||||| |||||||||    
T  29617379 gttgtgttgttcgtcgtcttgtgcggcgctgtttgatttcgcgtcttgttgcggtgttcgtttggttc 29617312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 31013812 - 31013721
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatc 216  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| |||  ||| |||||||  ||  ||||||||| ||||||||| ||||    
T  31013812 gtggttttaggtcattttttgacctagaatcacccctctacatctttttcccccttttctttcaatctaaataagtggttttcacatctatc 31013721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 34609799 - 34609874
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| ||||| |||||| ||||||| ||||||| |||| | ||||||||||| | |||||||||| |||||    
T  34609799 tcgtcgtctaagtgcggcgttgggttgttcctcgtcttgtgcgacgttatttgattttgtgtcttgttgcggtgtt 34609874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 14545144 - 14545050
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcaccc-ctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaa 218  Q
    |||||||||  ||||||||||| ||| |||||||| |||| ||||| |||||| | |||||||  ||  ||||||||| ||||||||||||||||    
T  14545144 gtggttttaggtcattttttgacctaaaatcaccctctctacatctttttttctcttttctttcaatctaaataagtggttttcacatatatcaa 14545050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 28897559 - 28897653
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||||||| |||||||||||| ||||| |||| | | |||||||  ||  ||||||||| ||||||  |||||||||    
T  28897559 gtggttttaagtcattttttgatctaaaatcacccctctacatcttttttcctcttttctttcaatctaaataagtggttttcatgtatatcaag 28897653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 3673410 - 3673482
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| ||||| | |||||||||||| |||||||||||||   | |||||||||| |||||||||| |||||    
T  3673410 tcgtcgtctaagtgcggtgttgtgttgttcgtcgtcttatgcgg---tgtttgatttcgtgtcttgttgcggtgtt 3673482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 5046613 - 5046691
Alignment:
Q  139 ttttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||| | |||||||| ||||| | |||||  |||||||||||||||| ||  |||||||||||||||||| ||||||||    
T  5046613 tttttttacctagaatcgcccctatgcatct--ttttcccctttcttttaatttaaataagtgattttcacacatatcaag 5046691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 5333395 - 5333480
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt-gtttggttc 323  Q
    ||||| ||||||||| | |||||||||||| ||||||| |||||  || |||||||| |||||||||| | ||||| |||||||||    
T  5333395 tcgtcatctgagtgcggtgttgtgttgttcgtcgtcttgtgcggtgttgtttgattttgcgtcttgttccggtgttcgtttggttc 5333480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 28086933 - 28086861
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| ||||| |||||||||||||| || |||| ||| |||||   |||||||||||||||| ||||||||    
T  28086933 tcgtcgtctaagtgctgcgttgtgttgttcgtcatcttgtgcagcatt---tgatttcgcgtcttgtcgcagtgtt 28086861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 25191318 - 25191223
Alignment:
Q  114 atcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcaca 210  Q
    |||||| ||| ||| |||||  ||||||||||| |||||||||||| ||| ||||| |||||||| |||||||  |   ||||||||||||||||||    
T  25191318 atcgaggagaggtgattttaggtcattttttgacctagaatcacccatctacatct-tttttcccttttctttcaaattaaataagtgattttcaca 25191223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 24099378 - 24099303
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    |||||||||||||||  ||||||||||||| ||||| | | | || || ||||||||||| ||||||||| |||||    
T  24099378 tcgtcgtctgagtgcgacgttgtgttgttcgtcgtcctgtaccgcgttgtttgatttcgcatcttgttgcggtgtt 24099303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 24099488 - 24099410
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||| |||||||||||||||| ||| | | ||||| |||||||| |||  ||||||||||||| |||||| ||||||    
T  24099488 tttttgacctagaatcacccctctgcattt-tgtttcctctttctttcgatttaaataagtgatttccacatagatcaag 24099410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 33342448 - 33342503
Alignment:
Q  259 tgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    |||||||||| |||||||||||||| || ||||||||| ||| ||||||| |||||    
T  33342448 tgtgttgttcttcgtcttatgcggcgttttttgatttcccgtattgttgcggtgtt 33342503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 325
Target Start/End: Complemental strand, 1236819 - 1236733
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgttgtttggttcat 325  Q
    ||||||||| |||||  | ||||||||||| | ||||| |||||| || |||||||| || ||||||||| |||||  |||||||||    
T  1236819 tcgtcgtctaagtgcgaccttgtgttgttcgttgtcttgtgcggcgttgtttgatttggcatcttgttgcggtgttcgttggttcat 1236733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 20553486 - 20553401
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacat 211  Q
    ||||||||| ||||||||| || ||||||||||||| |  ||| | |||||||| |||||||  ||  |||||||||||||||||||    
T  20553486 gtggttttagatcatttttggacctagaatcaccccacaacat-tttttttcccttttctttcaatctaaataagtgattttcacat 20553401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 27110705 - 27110611
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||||||| |||||| | ||| ||||| |||| | | |||||||  ||  ||||||||| | |||||||||||||||    
T  27110705 gtggttttaggtcattttttgatctaaaatcacacatctacatcttttttactcttttctttcaatctaaataagtggtcttcacatatatcaag 27110611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 29937963 - 29938056
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||| ||||||||| || |||||||||||||||| ||||| ||||  || |||||||  |   ||||||||| |||||| ||||||||||    
T  29937963 gtggttttagatcattttt-gacctagaatcacccctctacatcttttttcgccttttctttcaacctaaataagtggttttcatatatatcaag 29938056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 6831490 - 6831531
Alignment:
Q  178 cctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||    
T  6831490 cctttctttcgattcaaataagtgaatttcacatatatcaag 6831531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 3240238 - 3240318
Alignment:
Q  139 ttttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||| |||||||||||||| ||| ||||| ||||| |  || ||||  ||  ||||||||||||| |||||||||||||    
T  3240238 tttttttatctagaatcacccatctgcatcttttttttcatttcctttcaatctaaataagtgatttccacatatatcaag 3240318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 7677400 - 7677321
Alignment:
Q  242 tcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt-gtttggttc 323  Q
    |||||| | ||| |||||||||||||| ||||||| ||| ||   ||||||||||||||||||| || ||||| |||||||||    
T  7677400 tcgtctaattgcggcgttgtgttgttcgtcgtcttgtgctgc---atttgatttcgcgtcttgtcgcggtgttcgtttggttc 7677321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 7677521 - 7677477
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatct 169  Q
    |||||||||  ||||||||||| |||||||||||||||| |||||    
T  7677521 gtggttttaggtcattttttgacctagaatcacccctctacatct 7677477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 7883467 - 7883387
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcc-cctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||||| |||||||||||| ||||| |||| || | |||||||  ||  ||||||||| ||||||||| |||||||    
T  7883467 tttttgatctataatcacccctctacatcttttttccctcttttctttcaatctaaataagtggttttcacatctatcaag 7883387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 8443715 - 8443671
Alignment:
Q  172 ttttcccctttcttttgatacaaataagtgattttcacatatatc 216  Q
    ||||||||||||||| |||  ||||||||||||| ||||||||||    
T  8443715 ttttcccctttctttcgatctaaataagtgatttccacatatatc 8443671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 15344277 - 15344361
Alignment:
Q  241 gtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgttgtttggttcat 325  Q
    ||||||| |||||| | ||||||||||| ||||||| |||||| |  ||||||||  | ||||||||| |||||  |||||||||    
T  15344277 gtcgtctaagtgcaaccttgtgttgttcgtcgtcttgtgcggcgtagtttgatttgacatcttgttgcggtgttcgttggttcat 15344361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 15433342 - 15433426
Alignment:
Q  241 gtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgttgtttggttcat 325  Q
    ||||||| |||||| | ||||||||||| ||||||| |||||| |  ||||||||  | ||||||||| |||||  |||||||||    
T  15433342 gtcgtctaagtgcaaccttgtgttgttcgtcgtcttgtgcggcgtagtttgatttgacatcttgttgcggtgttcgttggttcat 15433426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 15524646 - 15524730
Alignment:
Q  241 gtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgttgtttggttcat 325  Q
    ||||||| |||||| | ||||||||||| ||||||| |||||| |  ||||||||  | ||||||||| |||||  |||||||||    
T  15524646 gtcgtctaagtgcaaccttgtgttgttcgtcgtcttgtgcggcgtagtttgatttgacatcttgttgcggtgttcgttggttcat 15524730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 20553361 - 20553317
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggc 283  Q
    ||||||||| ||||| ||||| |||||||| ||||||||||||||    
T  20553361 tcgtcgtctaagtgcggcgttttgttgttcgtcgtcttatgcggc 20553317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 37663329 - 37663221
Alignment:
Q  112 ttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttccc-ctttcttttgatacaaataagtgattttcaca 210  Q
    |||||||| | | ||||||||||  ||||||||||  ||||||||| | ||||||||| |||||  | |||| ||| |||  ||||||||| |||| |||    
T  37663329 ttatcgaggataagtggttttatgccattttttgacatagaatcactcatctccatctttttttatctctttatttcgatgtaaataagtggtttttaca 37663230  T
Q  211 tatatcaag 219  Q
    |||||||||    
T  37663229 tatatcaag 37663221  T

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Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 39657416 - 39657480
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtctt 303  Q
    ||||||||| |||||  |||||| |||||| ||||||| |||||| || ||||||||||| ||||    
T  39657416 tcgtcgtcttagtgcgacgttgtattgttcgtcgtcttgtgcggcgttgtttgatttcgcatctt 39657480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 40211532 - 40211452
Alignment:
Q  139 ttttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||| |||||||||||||||| ||||| |||| | | |||||||  ||  ||||||| | ||||||||| |||||||    
T  40211532 ttttttgacctagaatcacccctctacatcttttttactcttttctttcaatctaaataagcggttttcacatctatcaag 40211452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 30894483 - 30894573
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatat 215  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||| |||||||| |||||||  ||  |||||| || |||||||||||||    
T  30894483 gtggttttagatcattttttgacctagaatcacccctctacatctgtttttcccttttctttcaatctaaataactggttttcacatatat 30894573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 12170342 - 12170436
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| |||| ||| |||||||  ||  ||||||||| ||||||||| |||||||    
T  12170342 gtggttttaggtcattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtggttttcacatctatcaag 12170436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 31296671 - 31296750
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||| ||| ||||| | |||| ||||| ||||| ||| |||||| |||||||||||||||||| |||||||||||||    
T  31296671 tttttgacctataatcatctctctgcatctttttttaccccttctttcgatacaaataagtgatttacacatatatcaag 31296750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 31296793 - 31296860
Alignment:
Q  247 tgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||| ||||||||||||||||| |||| |||||| || |||||||| || |||||||||||||||    
T  31296793 tgagtgcggcgttgtgttgttcatcatcttgtgcggcgttgtttgattttgcatcttgttgcagtgtt 31296860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 33053411 - 33053317
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| ||||||||| |||||| ||||| |||| ||| |||||||  ||  ||||||||| ||||||||| |||||||    
T  33053411 gtggttttaggtcattttttgacctagaatcatccctctacatcttttttccccttttctttcaatctaaataagtggttttcacatctatcaag 33053317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 606055 - 606144
Alignment:
Q  129 ttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaa 218  Q
    |||||| ||||||||||| |||| ||||||||||| ||||| |||| ||| |||||||  ||  ||||||||| ||||||||| ||||||    
T  606055 ttttatgtcattttttgacctaggatcacccctctacatcttttttccccttttctttcaatctaaataagtggttttcacatctatcaa 606144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 30140627 - 30140575
Alignment:
Q  262 gttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||||||||| |||||||||  |||||||| |||||||||||||||||    
T  30140627 gttgttcatcgtcttgtgcggcattgcttgatttcacgtcttgttgcagtgtt 30140575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 34018409 - 34018501
Alignment:
Q  127 ggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||  ||||||||||| |||||||||||||||| ||||| |||  ||  |||||||  ||  ||||||||| |||||||||||||||||    
T  34018409 ggttttaggtcattttttgacctagaatcacccctctacatctctttacccattttctttcaatttaaataagtggttttcacatatatcaag 34018501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 14801069 - 14801147
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||||||||||||||||||  || | ||||||||||||||||  ||  |||||||| ||||||||||| ||||||    
T  14801069 tttttgatctagaatcacccctctgtatat-tttttcccctttctttcaatctaaataagtaattttcacatacatcaag 14801147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 13546785 - 13546713
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||| ||||||| |||||||||||||| ||||||||||||||    |||||||| ||| ||||||| ||||||    
T  13546785 tcgtcgtttgagtgcggcgttgtgttgttcgtcgtcttatgcggc---gtttgattttgcgccttgttgtagtgtt 13546713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 29320105 - 29320049
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttccccttt 182  Q
    |||||||||  |||| ||||||||||||||||||||||| ||||| ||||||||||||    
T  29320105 gtggttttaggtcatattttgatctagaatcacccctctacatct-tttttccccttt 29320049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 34222649 - 34222731
Alignment:
Q  131 ttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatat 215  Q
    |||| ||||||||| | |||||||||||||||| ||||  |||||||||||||||| |||  ||||||||| |||  ||||||||    
T  34222649 ttatgtcattttttaacctagaatcacccctctacatc--tttttcccctttctttcgatctaaataagtggtttcaacatatat 34222731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 8102687 - 8102751
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtctt 303  Q
    ||||||||| |||||| ||||||||| ||| ||||||| |||||| || ||||||||||| ||||    
T  8102687 tcgtcgtcttagtgcaacgttgtgtttttcgtcgtcttgtgcggcgttgtttgatttcgcatctt 8102751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 14801645 - 14801761
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccat-ctatttttcccctttcttttgatacaaataagtga 202  Q
    ||||||||| |||||||||  ||| |||||  ||| ||||||| ||||||| |||||||| ||| || ||||| ||| || |||| ||  ||||||| ||    
T  14801645 tctttcactcatcgagaaggggtgattttaggtcaatttttgacctagaataacccctctgcattcttttttttcccctttttttaattaaaataaggga 14801744  T
Q  203 ttttcacatatatcaag 219  Q
    |||||||||| ||||||    
T  14801745 ttttcacatacatcaag 14801761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 22571351 - 22571429
Alignment:
Q  139 ttttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||| ||||||||||| || ||| ||||| ||||||| ||| ||||||||  ||||||||||||| |||||||||||||    
T  22571351 tttttttatctagaatcaaccatctgcatct-tttttcctctt-cttttgatctaaataagtgatttccacatatatcaag 22571429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 26588594 - 26588510
Alignment:
Q  242 tcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt-gtttggttcat 325  Q
    |||| ||||||| | ||||||||| |  ||||||| |||||| || ||||||||| ||||||||||| ||||| |||||||||||    
T  26588594 tcgtttgagtgcggagttgtgttgattgtcgtcttgtgcggcgttgtttgatttcccgtcttgttgcggtgttcgtttggttcat 26588510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 3913817 - 3913723
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctt-tcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||||||||||||  ||||| |||||||| || |||||  ||  ||||||||| ||||||||| |||||||    
T  3913817 gtggttttaggtcattttttgacctagaatcacccctccgcatct-tttttcccattctctttcaatctaaataagtggttttcacatctatcaag 3913723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 314
Target Start/End: Complemental strand, 29319998 - 29319928
Alignment:
Q  241 gtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||| ||||| |||||||||||||| || |||||||||||    |||||||||||||||||| || |||||    
T  29319998 gtcgtctaagtgcggcgttgtgttgttcgtcctcttatgcggc---gtttgatttcgcgtcttgtcgcggtgtt 29319928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 20220760 - 20220839
Alignment:
Q  129 ttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcaca 210  Q
    |||||| |||||||||||| | ||||||||| ||| ||||  |||||||||||||||| |||  |||||||||  |||||||    
T  20220760 ttttatgtcattttttgatatggaatcacccatctgcatc--tttttcccctttctttcgatttaaataagtggctttcaca 20220839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 22114744 - 22114823
Alignment:
Q  129 ttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcaca 210  Q
    |||||| |||||||||||| | ||||||||| ||| ||||  |||||||||||||||| |||  |||||||||  |||||||    
T  22114744 ttttatgtcattttttgatatggaatcacccatctgcatc--tttttcccctttctttcgatttaaataagtggctttcaca 22114823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 32191975 - 32191881
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  || |||||||||||| |||||||| ||| ||||| |||  ||| ||| ||| |||  |||||||||||||  ||||||||||||    
T  32191975 gtggttttaggtccttttttgatctacaatcacccttctgcatctttttcccccttttatttcgatctaaataagtgatttctacatatatcaag 32191881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 127638 - 127675
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtctt 276  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  127638 tcgtcgtctaagtgcagcgttgtgttgttcgtcgtctt 127675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 1523369 - 1523426
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttc 296  Q
    ||||||||| |||||  ||||||||||||| ||||||| |||| |||| |||||||||    
T  1523369 tcgtcgtcttagtgcgacgttgtgttgttcgtcgtcttgtgcgacattgtttgatttc 1523426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 33053290 - 33053218
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    ||||||||||||| |||| || |||||    
T  33053290 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc---gtttgatttcgcgttttgtcgcggtgtt 33053218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 68229 - 68150
Alignment:
Q  140 tttttgatctagaatca-cccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||| ||||||||| ||||||| ||||| |||| ||| |||||||| ||  ||||||||| ||||||||| |||||||    
T  68229 tttttgacctagaatcaccccctctacatct-ttttccccttttcttttaatctaaataagtggttttcacatctatcaag 68150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 7976302 - 7976234
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttg 307  Q
    |||||||||||||||   |||||||||||| ||||||| |||||| || ||| |||  |||||||||||    
T  7976302 tcgtcgtctgagtgcgttgttgtgttgttcgtcgtcttgtgcggcgttttttaattatgcgtcttgttg 7976234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 8102580 - 8102660
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcc-cctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||| |||||||||||||||| ||| | ||||| | |||||||||  ||  |||||||||||||||||| | ||||||    
T  8102580 tttttgacctagaatcacccctctgcatattttttttctcctttctttcaatctaaataagtgattttcacaaacatcaag 8102660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 28981145 - 28981229
Alignment:
Q  242 tcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt-gtttggttcat 325  Q
    |||||||||| | |||||||||||||| ||||||| |||||  || |||||||| |  ||||||||  ||||| |||||||||||    
T  28981145 tcgtctgagtacggcgttgtgttgttcgtcgtcttctgcggtgttgtttgattttgtatcttgttgtggtgttcgtttggttcat 28981229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 30493500 - 30493564
Alignment:
Q  242 tcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgtt 306  Q
    |||||||||||| | |||||||||||| ||||||| ||| || || ||||||||||  |||||||    
T  30493500 tcgtctgagtgcggtgttgtgttgttcgtcgtcttgtgcagcgttgtttgatttcgtatcttgtt 30493564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 32327334 - 32327267
Alignment:
Q  244 gtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    |||| ||||| |||||||||||||| ||||||| ||||||    |||||||||||||||||| || |||||    
T  32327334 gtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc---gtttgatttcgcgtcttgtcgcggtgtt 32327267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 19120886 - 19120951
Alignment:
Q  249 agtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||| |||||||||||||| |||||||||| |||||| ||||||||||||||||||||| |||||    
T  19120886 agtgcggcgttgtgttgttcgtcgtcttatgaggcattgtttgatttcgcgtcttgttgcggtgtt 19120951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 10332656 - 10332598
Alignment:
Q  256 cgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||||||  ||||||| ||||||||| |||||||||||||||||||||||||||    
T  10332656 cgttgtgttgtttgtcgtcttgtgcggcattgtttgatttcgcgtcttgttgcagtgtt 10332598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 2979576 - 2979462
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    ||||||||| |||||| ||  ||| |||||  ||| ||||||| ||| |||||||||||| ||||| ||||||| ||||||||  ||  |||||||||||    
T  2979576 tctttcactcatcgaggaggggtgattttaggtcaatttttgacctataatcacccctctgcatct-tttttcctctttctttcaatctaaataagtgat 2979478  T
Q  204 tttcacatatatcaag 219  Q
    ||||||||| ||||||    
T  2979477 tttcacatacatcaag 2979462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 39567120 - 39567234
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    ||||||||| |||||| ||  ||| |||||  ||| ||||||| |||||||||| ||||| ||||| |||| |||||||||||  ||  |||||||||||    
T  39567120 tctttcactcatcgaggaggggtgattttaggtcaatttttgacctagaatcacgcctctgcatct-ttttccccctttctttcaatctaaataagtgat 39567218  T
Q  204 tttcacatatatcaag 219  Q
    ||||||||| ||||||    
T  39567219 tttcacatacatcaag 39567234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 6012381 - 6012287
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  |||||||||||  ||||||||||||||| ||||| |||||||| |||||||  ||  ||||||||| ||||||| | |||||||    
T  6012381 gtggttttaggtcattttttgacatagaatcacccctctacatctttttttcccttttctttcaatctaaataagtgtttttcacgtctatcaag 6012287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 31314631 - 31314692
Alignment:
Q  151 gaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatat 215  Q
    ||||||||||||| |||   ||||||||||||||||||||| ||||||||||||| |||||||||    
T  31314631 gaatcacccctctacat---tttttcccctttcttttgatataaataagtgatttccacatatat 31314692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 38597643 - 38597736
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  | ||||||||| |||||||||||||||| ||||| ||||||||  ||||||  ||  ||||||||||||||||||| |||||||    
T  38597643 gtggttttaggttattttttgacctagaatcacccctctacatct-tttttccctattctttcaatttaaataagtgattttcacatctatcaag 38597736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 13007063 - 13007168
Alignment:
Q  114 atcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatat 213  Q
    |||||| ||| |||||||||  ||||||||||| |||||||||||||||| || || |||| ||  |||||||  ||  ||||||||| ||||||||| |    
T  13007063 atcgaggagaggtggttttaggtcattttttgacctagaatcacccctctacaccttttttcccattttctttcaatctaaataagtggttttcacatct 13007162  T
Q  214 atcaag 219  Q
    ||||||    
T  13007163 atcaag 13007168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 19103691 - 19103623
Alignment:
Q  150 agaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||||||  ||||| |||||||||||||||| |||  |||||||||||||||||||| ||||||    
T  19103691 agaatcacccctcagcatct-tttttcccctttctttcgatctaaataagtgattttcacatacatcaag 19103623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 26878332 - 26878228
Alignment:
Q  114 atcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatat 213  Q
    |||||| ||| |||||||||| |||||||| |||||||||||||| |||| ||||| |||  ||| |||||||  ||  ||||||||| ||||||||||     
T  26878332 atcgaggagaggtggttttatgtcattttt-gatctagaatcacctctctacatctttttcccccttttctttcaatctaaataagtggttttcacataa 26878234  T
Q  214 atcaag 219  Q
    ||||||    
T  26878233 atcaag 26878228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 31364395 - 31364440
Alignment:
Q  170 atttttcccctttcttttgatacaaataagtgattttcacatatat 215  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||    
T  31364395 atttttcccctttcttttgatataaataagtgatttccacatatat 31364440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 34945268 - 34945361
Alignment:
Q  126 tggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||  ||||||||||| |||||||||||| ||| ||||| |||| ||| |||||||  ||  ||||||||| ||||||||| |||||||    
T  34945268 tggttttaggtcattttttgacctagaatcacccttctacatcttttttccccttttctttcaatctaaataagtggttttcacatctatcaag 34945361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 325
Target Start/End: Complemental strand, 8088317 - 8088250
Alignment:
Q  258 ttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgttgtttggttcat 325  Q
    |||||||||| |||||||| |||||| || |||||||| || |||||||||||||||  |||||||||    
T  8088317 ttgtgttgtttatcgtcttgtgcggcgttgtttgatttggcatcttgttgcagtgttcgttggttcat 8088250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 9113957 - 9113874
Alignment:
Q  136 tcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||| | |||||||||||||||| ||||| |||| ||  |||||||| ||  ||||||||| ||||||||| |||||||    
T  9113957 tcattttttaacctagaatcacccctctacatcttttttcccattttcttttaatctaaataagtggttttcacatctatcaag 9113874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 298
Target Start/End: Original strand, 14211093 - 14211245
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaagnnnnnnnnncatgatttcgt 239  Q
    ||||||| |||||||||||||||| ||||| |||   ||||||||||  ||  |||||||||||||||||||| ||||||         | |||||   |    
T  14211093 tttttgacctagaatcacccctctgcatcttttt---ccctttctttcaatctaaataagtgattttcacatacatcaagtttttatttcgtgatt---t 14211186  T
Q  240 cgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgc 298  Q
    |||||||| |||||  | ||||||||||| ||||||| |||||| || |||||||||||    
T  14211187 cgtcgtcttagtgcgacattgtgttgttcgtcgtcttgtgcggcgttgtttgatttcgc 14211245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 38007203 - 38007295
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| || ||||||||||||| ||||  |||||||| |||||||  ||  ||||||||| |||||||| ||||||||    
T  38007203 gtggttttaggtcattttttgacctcgaatcacccctctacatc--tttttcccttttctttcaatttaaataagtggttttcacacatatcaag 38007295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 19349679 - 19349745
Alignment:
Q  258 ttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt-gtttggttc 323  Q
    ||||||||||| ||||||| |||||| |||||||||||| ||||| |||||| |||| |||||||||    
T  19349679 ttgtgttgttcgtcgtcttgtgcggcgttatttgatttcacgtctagttgcaatgttcgtttggttc 19349745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 31391875 - 31391803
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||| |||||  ||||||||||||| ||||||| ||||||   |||||||||||| |||||| ||||||||    
T  31391875 tcgtcgtctaagtgcgacgttgtgttgttcttcgtcttgtgcggc---atttgatttcgcatcttgtcgcagtgtt 31391803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 31392000 - 31391943
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttccccttt 182  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| ||| ||||||||    
T  31392000 gtggttttaggtcattttttgacctagaatcacccctctacatctttttctccccttt 31391943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 38597763 - 38597826
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgt 305  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    ||||||||||||||||||    
T  38597763 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc---gtttgatttcgcgtcttgt 38597826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 8096725 - 8096647
Alignment:
Q  140 tttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||| ||||||||||||||||   ||| |||||||| |||||||  ||  ||||||||| |||||||||||||||||    
T  8096725 tttttgacctagaatcacccctctatttct-tttttcccttttctttcaatctaaataagtggttttcacatatatcaag 8096647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 35921121 - 35921046
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    |||||||||||||||  | || | |||||| |||||||||| | | || ||||||||||||||||||||| |||||    
T  35921121 tcgtcgtctgagtgcgacattatattgttcgtcgtcttatgagacgttgtttgatttcgcgtcttgttgcggtgtt 35921046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 37986227 - 37986169
Alignment:
Q  247 tgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgc 308  Q
    ||||||| |||||||||||||||||||||| ||||||    ||||||||||| |||||||||    
T  37986227 tgagtgcggcgttgtgttgttcatcgtcttgtgcggc---gtttgatttcgcatcttgttgc 37986169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 323
Target Start/End: Complemental strand, 38111063 - 38110988
Alignment:
Q  249 agtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtg-ttgtttggttc 323  Q
    ||||||| |||||||||||  | ||||| |||||| || |||||||| | |||||||||||||| |||||||||||    
T  38111063 agtgcagtgttgtgttgtttgttgtcttgtgcggcgttgtttgattttgtgtcttgttgcagtgtttgtttggttc 38110988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 42886484 - 42886539
Alignment:
Q  259 tgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    |||||||||| ||||||| |||||| || ||||||||| || ||||||||||||||    
T  42886484 tgtgttgttcgtcgtcttgtgcggcgttgtttgatttcccgccttgttgcagtgtt 42886539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 7036073 - 7036166
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaa 218  Q
    |||||||||  ||||||||||| ||| |||||| | ||| ||||| |||| | | |||||||  ||  ||||||||| ||||||||||||||||    
T  7036073 gtggttttaggtcattttttgacctaaaatcactcatctacatcttttttcctcttttctttcaatctaaataagtggttttcacatatatcaa 7036166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 11074022 - 11073950
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    |||| |||| ||||||||||||| |||||| ||||||| ||||||    |||||||||||||||||| || |||||    
T  11074022 tcgttgtctaagtgcagcgttgttttgttcgtcgtcttgtgcggc---gtttgatttcgcgtcttgtcgcggtgtt 11073950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 325
Target Start/End: Original strand, 16758521 - 16758590
Alignment:
Q  257 gttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt-gtttggttcat 325  Q
    ||||||||||| |||||| | |||||  |||||||||||||||| ||||| | ||||| |||||||||||    
T  16758521 gttgtgttgtttatcgtcgtgtgcggtcttatttgatttcgcgttttgttacggtgttcgtttggttcat 16758590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 26510765 - 26510696
Alignment:
Q  242 tcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagt 311  Q
    |||||| |||| ||||||||||| ||| || |||| |||| | || |||||||| |||||||||||||||    
T  26510765 tcgtctaagtgtagcgttgtgttattcgtcatcttgtgcgtcgttgtttgattttgcgtcttgttgcagt 26510696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 13007195 - 13007239
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggc 283  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    
T  13007195 tcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgcggc 13007239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 28541032 - 28540976
Alignment:
Q  242 tcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgc 298  Q
    |||||| |||||  ||||||||||||| ||||||| |||||| || |||||||||||    
T  28541032 tcgtcttagtgcgacgttgtgttgttcgtcgtcttgtgcggcgttgtttgatttcgc 28540976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 28541110 - 28541062
Alignment:
Q  171 tttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||||||||||  ||  |||||||||||||||||||| ||||||    
T  28541110 tttttcccctttctttcaatctaaataagtgattttcacatacatcaag 28541062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 41749308 - 41749364
Alignment:
Q  258 ttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||||   |||||||||| ||||| ||||||||| | |||||||||||||||    
T  41749308 ttgtgttgttatccgtcttatgcagcattgtttgatttcacatcttgttgcagtgtt 41749364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 1938 - 1824
Alignment:
Q  104 tctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgat 203  Q
    |||||||||||||||| ||  ||| | |||  ||| ||||||| ||||||||||| |||| ||||| ||||||||||||||||  ||  |||||||||||    
T  1938 tctttcacttatcgaggaggggtgatattaggtcaatttttgacctagaatcacctctctgcatct-tttttcccctttctttcaatctaaataagtgat 1840  T
Q  204 tttcacatatatcaag 219  Q
    ||||||||| ||||||    
T  1839 tttcacatacatcaag 1824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 1179 - 1283
Alignment:
Q  114 atcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatat 213  Q
    |||||| ||| |||||||||  ||||||||||| |||||||||||||||| | ||| |||||||| |||||||   |  ||||||||| |||||||||||    
T  1179 atcgaggagaggtggttttaggtcattttttgacctagaatcacccctctacttct-tttttcccttttctttcactctaaataagtggttttcacatat 1277  T
Q  214 atcaag 219  Q
    ||||||    
T  1278 atcaag 1283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 1314 - 1383
Alignment:
Q  242 tcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    |||||| ||||| |||||||||||||| ||||||| || |||    ||||||||||||||||||||| |||||    
T  1314 tcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgtggc---gtttgatttcgcgtcttgttgcggtgtt 1383  T

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Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 58369 - 58229
Alignment:
Q  79 tccaacttctctccaagttctt-ttttctttcacttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcc 177  Q
    ||||||||||||| ||||| |  ||||||||||||  ||||| ||  |||||||||  ||||||||||| ||| |||||||||||| ||||  ||||| |    
T  58369 tccaacttctctctaagttttcgttttctttcactcgtcgaggaggggtggttttaggtcattttttgacctaaaatcacccctctgcatc-cttttttc 58271  T
Q  178 cctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    | |||||||  ||  ||||||||||||| |||||||||||||    
T  58270 cttttctttcaatctaaataagtgatttccacatatatcaag 58229  T

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Target: scaffold0347 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 5994 - 6069
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||||||||||||||  | |||||||||| ||||||| |||||| || ||||||||||||| ||||||| |||||    
T  5994 tcgtcgtctgagtgcaatgatgtgttgttcgtcgtcttgtgcggcgttgtttgatttcgcgtattgttgcggtgtt 6069  T

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Target: scaffold0884 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 2215 - 2159
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttccccttt 182  Q
    |||||||||  |||||||||||||||||||||||||||| ||||| ||||||||||||    
T  2215 gtggttttaagtcattttttgatctagaatcacccctctacatct-tttttccccttt 2159  T

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Target: scaffold0017 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 33004 - 32897
Alignment:
Q  112 ttatcgagaagatgtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacat 211  Q
    |||||||| ||  |||||||||  |||||||||||  ||||||||||||||| ||||| || | ||| |||||||  ||  ||||||||| |||||||||    
T  33004 ttatcgaggaggagtggttttaggtcattttttgacatagaatcacccctctacatcttttgtccccttttctttcaatctaaataagtggttttcacat 32905  T
Q  212 atatcaag 219  Q
     |||||||    
T  32904 ctatcaag 32897  T

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Target: scaffold0017; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 32869 - 32806
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgt 305  Q
    ||||||||| ||||| ||||| |||||||| ||||||| |||||| ||   ||||||||||||||||    
T  32869 tcgtcgtctaagtgcggcgttttgttgttcgtcgtcttgtgcggcgtt---tgatttcgcgtcttgt 32806  T

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Target: scaffold0603 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 7564 - 7655
Alignment:
Q  126 tggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    ||||||||  ||||||||||| |||||||||| | ||| |||||  ||| |||||||||||  ||  ||||||||| |||||||||||||||||    
T  7564 tggttttaggtcattttttgacctagaatcactcatctgcatct--tttacccctttctttcaatttaaataagtggttttcacatatatcaag 7655  T

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Target: scaffold0026 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 72107 - 72013
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttcacatatatcaag 219  Q
    |||||||||  ||||||||||| |||||||||||  ||| ||||| |||  ||| |||||||  || |||||||||| ||||||||| |||||||    
T  72107 gtggttttaggtcattttttgacctagaatcaccattcttcatctttttcccccttttctttcaatccaaataagtggttttcacatctatcaag 72013  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 93070 - 93158
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgat-ttcgcgtcttgttgcagtgtt-gtttggttcat 325  Q
    ||||||||||||||| |||||||||||||  | ||||| |||||| || |||||| |||| |||||||||  ||||| |||||||||||    
T  93070 tcgtcgtctgagtgctgcgttgtgttgtttgttgtcttgtgcggcgttgtttgatattcgtgtcttgttgtggtgttcgtttggttcat 93158  T

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Target: scaffold0127 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 15338 - 15420
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatctatttttcccctttcttttgatacaaataagtgattttca 208  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| |||| ||| |||||||  ||  ||||||||| ||||||    
T  15338 gtggttttaggtcattttttgacctagaatcacccctctacatct-ttttccccttttctttcaatctaaataagtggttttca 15420  T

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Target: scaffold0127; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 15458 - 15531
Alignment:
Q  239 tcgtcgtctgagtgcagcgttgtgttgttcatcgtcttatgcggcattatttgatttcgcgtcttgttgcagtgtt 314  Q
    ||||| ||| ||||| | |||||||||||| ||||||| |||||| |  |||||||||||||||||| || |||||    
T  15458 tcgtcatctaagtgcggtgttgtgttgttcgtcgtcttgtgcggcgt--tttgatttcgcgtcttgtcgcggtgtt 15531  T

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Target: scaffold0087 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 25572 - 25528
Alignment:
Q  125 gtggttttatatcattttttgatctagaatcacccctctccatct 169  Q
    |||||||||| ||||||||||| ||| |||||||||||| |||||    
T  25572 gtggttttatgtcattttttgacctataatcacccctctacatct 25528  T

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