View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1810_low_8 (Length: 241)
Name: NF1810_low_8
Description: NF1810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1810_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24698420 - 24698199
Alignment:
| Q |
1 |
cttcactaggttctcttgaattttatagtcatcatcaatcacgtagcattttcttggttccagaaagactgaaaaaaccaaacgttgatgcatacatgcc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
24698420 |
cttcgctaggttctcttgaattttatagtcatcatcaatcacgtagcattttcttggttccagaaagacttaaaaaaccaaacgtggatgcatacatgcc |
24698321 |
T |
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| Q |
101 |
aagggtggtgtcaatcggaccccgattcaaaggaagcaacgaagacctattgcagatggaagatatcaaaataaggtgcatgaagcatctctttcaacga |
200 |
Q |
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| T |
24698320 |
aagggtggtgtcaatcggaccccgattcaaaggaagcaacgaagacctattgcagatggaagatatcaaaataaggtgcatgaagcatctctttcaacga |
24698221 |
T |
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| Q |
201 |
ggaatactacgcgaccgcagtg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
24698220 |
ggaatactacgcgaccgcagtg |
24698199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 24536494 - 24536637
Alignment:
| Q |
57 |
gttccagaaagactgaaaaaaccaaacgttgatgcatacatgccaagggtggtgtcaatcggaccccgattcaaaggaagcaacgaagacctattgcaga |
156 |
Q |
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| T |
24536494 |
gttccagaaagacttaaaaaatcgaaggaagatgcatacgtgccaagagtggtgtccatcggaccacgattcaagggaagcagagaagacctattgctca |
24536593 |
T |
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| Q |
157 |
tggaagatatcaaaataaggtgcatgaagcatctctttcaacga |
200 |
Q |
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| T |
24536594 |
tggaagacatcaaaatgcggtgcatgaagcatctatttctacga |
24536637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 196
Target Start/End: Complemental strand, 24897694 - 24897533
Alignment:
| Q |
35 |
tcaatcacgtagcattttcttggttccagaaagactgaaaaaaccaaacgttgatgcatacatgccaagggtggtgtcaatcggaccccgattcaaagga |
134 |
Q |
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| T |
24897694 |
tcaatcacgtagcatttccattgttcctgaagtacttaaaaaatcaaacgaggatgcatatacaccaagggcagtgtccattggaccccgattcaaggga |
24897595 |
T |
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| Q |
135 |
agcaacgaagacctattgcagatggaagatatcaaaataaggtgcatgaagcatctctttca |
196 |
Q |
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| T |
24897594 |
agcagggaagacttacttctcatggaagagatcaaaataaggtgcatgatgtatctctttca |
24897533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 24864609 - 24864506
Alignment:
| Q |
35 |
tcaatcacgtagcattttcttggttccagaaagactgaaaaaaccaaacgttgatgcatacatgccaagggtggtgtcaatcggaccccgattcaaagga |
134 |
Q |
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||||||| ||||||||| | ||||||||||||| || |||||| |||| |||||||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
24864609 |
tcaatcatgtagcatttccgtggttccagaaagtcttaaaaaattgaacgaggatgcatacatgccaagggtggtgtccataggaccaagattcaaagga |
24864510 |
T |
|
| Q |
135 |
agca |
138 |
Q |
| |
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|||| |
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| T |
24864509 |
agca |
24864506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 196
Target Start/End: Complemental strand, 24856415 - 24856254
Alignment:
| Q |
35 |
tcaatcacgtagcattttcttggttccagaaagactgaaaaaaccaaacgttgatgcatacatgccaagggtggtgtcaatcggaccccgattcaaagga |
134 |
Q |
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||||||||||||||||| | ||||| ||| ||| |||||| |||||| |||||||||| ||||||||||||||||| |||||||||||||| || |
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| T |
24856415 |
tcaatcacgtagcatttcgattgttcctgaattacttaaaaaatcaaacgaggatgcatacacaccaagggtggtgtcaataggaccccgattcaagaga |
24856316 |
T |
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| Q |
135 |
agcaacgaagacctattgcagatggaagatatcaaaataaggtgcatgaagcatctctttca |
196 |
Q |
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||| | ||| | || | |||||||| ||||||||||||||||||| | |||||||||| |
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| T |
24856315 |
agcgaagaaaccttacttatcatggaagagatcaaaataaggtgcatgatgtatctctttca |
24856254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 24898949 - 24898994
Alignment:
| Q |
93 |
tacatgccaagggtggtgtcaatcggaccccgattcaaaggaagca |
138 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
24898949 |
tacatgccaagggtggtatcaatcggaccaagattcaaaggaagca |
24898994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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