View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18110_high_4 (Length: 362)
Name: NF18110_high_4
Description: NF18110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18110_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 166 - 344
Target Start/End: Complemental strand, 47523736 - 47523558
Alignment:
| Q |
166 |
catagtaaagtcgaagcacggtcgaggtgccgtggcacgtgattggctacattcttcaccatccgacactaaaaccaacagaactgnnnnnnnnttggag |
265 |
Q |
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| T |
47523736 |
catagtaaagtcgaagcacagtcgaggtgctgtggcacgtgattggctacattcttcaccatccgacactaaaaccaacagaactgaaacaaaattggag |
47523637 |
T |
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| Q |
266 |
cgcaatgaaaccaccccagatcagactcaccaatatgatccaatccaaactagattacaatcaatacaaaaagccccta |
344 |
Q |
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| T |
47523636 |
cacaatgaaaccaccccagatcagattcaccaatatgatccaatccaaactagattacaatcaatacaaaaagccccta |
47523558 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 29168558 - 29168590
Alignment:
| Q |
173 |
aagtcgaagcacggtcgaggtgccgtggcacgt |
205 |
Q |
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| T |
29168558 |
aagtcgaagcacggtcgaggtgctgtggcacgt |
29168590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 9454686 - 9454650
Alignment:
| Q |
169 |
agtaaagtcgaagcacggtcgaggtgccgtggcacgt |
205 |
Q |
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| T |
9454686 |
agtaaagtcaaagcacggtcgaggtgctgtggcacgt |
9454650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 26377392 - 26377360
Alignment:
| Q |
173 |
aagtcgaagcacggtcgaggtgccgtggcacgt |
205 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
26377392 |
aagtcgaagcacggtggaggtgccgtggcacgt |
26377360 |
T |
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