View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18110_high_6 (Length: 332)
Name: NF18110_high_6
Description: NF18110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18110_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 28424434 - 28424129
Alignment:
| Q |
11 |
cacagaataacatagcggcgcgtatcatcgtcttcatca-tagatgcagtagccgcacacatcataccaattaacaaaagtgaacaacgatgaagcctcc |
109 |
Q |
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| T |
28424434 |
cacagaataacatagcggcgcgtatcatcgtcttcatcagtagatgcagtagccgcacacatcataccaattaacaaaagtgaacaacgatgaagcctcc |
28424335 |
T |
|
| Q |
110 |
gatcccgttatcaacgacgatgatagccataaccctagcaacagcgacactatctctctccatcatccccacctcctcatggcaaatcctctcctcccac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28424334 |
gatcccgttatcaacgacgatgatagccataaccctagcaacagcaacactatctctctccatcatccccacctcctcatggcaaatcctctcctcccac |
28424235 |
T |
|
| Q |
210 |
aatttcacttcccagatccaactccaccaacacatcctcctcctcctcactctcccttggtccggcgaatctcgttcccttatgaacgatatctcgctcg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28424234 |
aatttcacttcccagatccaactccaccaacacatcctcctcctcctcactctcccttggtccggcgaatctcgttcccttatgaacgatatctcgctcg |
28424135 |
T |
|
| Q |
310 |
caatct |
315 |
Q |
| |
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|||||| |
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| T |
28424134 |
caatct |
28424129 |
T |
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