View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18110_high_7 (Length: 288)
Name: NF18110_high_7
Description: NF18110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18110_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 23930361 - 23930615
Alignment:
| Q |
15 |
gacacgtcaatattgataataatgcgataaaagtagtctaatgtgttatggtcatatcatgtcggtgttggacactggacaaactttcgatcagaagtgt |
114 |
Q |
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| T |
23930361 |
gacacgtcaatactaataataatgcgaaaaaagtagtctaatgtgttatggtcatatcatgtcggtgttggacactggacagactttcgatcagaagtgt |
23930460 |
T |
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| Q |
115 |
tggttctaatggattttgtttctctaatgttgttaattgtacctgtttgttttttgcaggcatgaaacagagaaccgtttaagagtacacataacagatg |
214 |
Q |
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| T |
23930461 |
tggttctaatggattttgtttctctaatgttgttaattgtacctgtttgttttttgcaggcatgaaacagagaaccgtttaagagtacacataacagatg |
23930560 |
T |
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| Q |
215 |
caaacaagcaaagatgggaagtaccatacaaccttatcccaagagaacaaccacc |
269 |
Q |
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| T |
23930561 |
caaacaagcaaagatgggaagtaccatacaaccttatcccaagagaacaaccacc |
23930615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 28486801 - 28486761
Alignment:
| Q |
78 |
ggtgttggacactggacaaactttcgatcagaagtgttggt |
118 |
Q |
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| T |
28486801 |
ggtgttggacactggacacaccttcgatcagaagtgttggt |
28486761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 29799214 - 29799174
Alignment:
| Q |
78 |
ggtgttggacactggacaaactttcgatcagaagtgttggt |
118 |
Q |
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| T |
29799214 |
ggtgttggacactggacacaccttcgatcagaagtgttggt |
29799174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 269
Target Start/End: Complemental strand, 50122273 - 50122172
Alignment:
| Q |
168 |
ttgcaggcatgaaacagagaaccgtttaagagtacacataacagatgcaaacaagcaaagatgggaagtaccatacaaccttatcccaagagaacaacca |
267 |
Q |
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||||||||| || || |||| ||||| || ||||||||||| |||||||| |||||||| ||||| || || ||||| ||| | ||||| || |||||| |
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| T |
50122273 |
ttgcaggcacgagactgagagtcgtttgagggtacacataactgatgcaaagaagcaaaggtgggaggttccctacaatcttttgccaagggagcaacca |
50122174 |
T |
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| Q |
268 |
cc |
269 |
Q |
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|| |
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| T |
50122173 |
cc |
50122172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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