View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18110_low_10 (Length: 265)

Name: NF18110_low_10
Description: NF18110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18110_low_10
NF18110_low_10
[»] chr2 (20 HSPs)
chr2 (78-249)||(41196067-41196226)
chr2 (1-68)||(41197361-41197430)
chr2 (1-68)||(38429964-38430032)
chr2 (1-68)||(41763176-41763244)
chr2 (5-68)||(451782-451846)
chr2 (1-68)||(11992242-11992310)
chr2 (1-68)||(23997694-23997762)
chr2 (5-44)||(12734783-12734822)
chr2 (1-67)||(39029661-39029728)
chr2 (5-68)||(2610672-2610736)
chr2 (5-68)||(28508762-28508826)
chr2 (5-68)||(36183535-36183599)
chr2 (5-44)||(8180864-8180903)
chr2 (5-44)||(24583791-24583830)
chr2 (1-31)||(25834761-25834791)
chr2 (5-68)||(3243787-3243851)
chr2 (5-33)||(3866156-3866184)
chr2 (5-68)||(4807679-4807743)
chr2 (5-68)||(7326294-7326358)
chr2 (1-68)||(45367759-45367827)
[»] chr8 (15 HSPs)
chr8 (1-68)||(42469861-42469929)
chr8 (1-68)||(42854138-42854206)
chr8 (5-68)||(40813408-40813472)
chr8 (3-68)||(2796635-2796701)
chr8 (5-68)||(11523857-11523921)
chr8 (5-61)||(18125257-18125313)
chr8 (5-44)||(37077835-37077874)
chr8 (3-68)||(8932785-8932851)
chr8 (1-68)||(12025869-12025937)
chr8 (5-68)||(36545233-36545297)
chr8 (5-68)||(36565375-36565439)
chr8 (5-66)||(21121230-21121292)
chr8 (1-35)||(26905074-26905108)
chr8 (5-68)||(12491272-12491336)
chr8 (5-68)||(36395083-36395147)
[»] chr7 (25 HSPs)
chr7 (1-68)||(43281754-43281822)
chr7 (5-68)||(12841409-12841473)
chr7 (1-68)||(29650464-29650532)
chr7 (1-67)||(24598322-24598389)
chr7 (6-68)||(44855306-44855369)
chr7 (5-68)||(11594044-11594108)
chr7 (5-68)||(31005307-31005371)
chr7 (1-68)||(32631656-32631724)
chr7 (5-68)||(33349940-33350004)
chr7 (5-68)||(35559127-35559191)
chr7 (5-68)||(37618029-37618093)
chr7 (1-34)||(45836649-45836682)
chr7 (5-68)||(13859142-13859206)
chr7 (5-68)||(22349704-22349768)
chr7 (5-68)||(33073036-33073100)
chr7 (5-68)||(36652076-36652140)
chr7 (1-68)||(38607084-38607152)
chr7 (5-68)||(46355990-46356054)
chr7 (6-68)||(31682736-31682799)
chr7 (6-44)||(23404502-23404540)
chr7 (1-68)||(2885856-2885924)
chr7 (5-68)||(34869504-34869568)
chr7 (5-68)||(35906335-35906399)
chr7 (7-35)||(36869412-36869440)
chr7 (5-68)||(49029360-49029424)
[»] chr6 (14 HSPs)
chr6 (1-68)||(5258282-5258350)
chr6 (1-68)||(35043575-35043643)
chr6 (1-67)||(14030887-14030954)
chr6 (6-68)||(32756006-32756069)
chr6 (1-68)||(10099993-10100061)
chr6 (5-68)||(30031340-30031404)
chr6 (5-61)||(7133830-7133887)
chr6 (5-61)||(7136753-7136810)
chr6 (5-68)||(28085460-28085524)
chr6 (1-44)||(9706850-9706893)
chr6 (3-68)||(21351971-21352037)
chr6 (3-44)||(608239-608280)
chr6 (5-68)||(5080924-5080988)
chr6 (1-68)||(20427770-20427838)
[»] chr1 (20 HSPs)
chr1 (1-68)||(4001589-4001657)
chr1 (1-68)||(32082879-32082947)
chr1 (1-68)||(696349-696417)
chr1 (1-68)||(15086014-15086082)
chr1 (3-68)||(37311889-37311955)
chr1 (5-68)||(1210829-1210893)
chr1 (5-68)||(8672002-8672066)
chr1 (5-68)||(34792483-34792547)
chr1 (5-68)||(43240513-43240577)
chr1 (5-68)||(49347527-49347591)
chr1 (5-68)||(51602140-51602204)
chr1 (6-68)||(32231088-32231151)
chr1 (5-66)||(9592818-9592880)
chr1 (5-68)||(4029206-4029270)
chr1 (5-68)||(30202264-30202328)
chr1 (5-68)||(39318213-39318277)
chr1 (2-68)||(25979365-25979432)
chr1 (1-35)||(8391852-8391886)
chr1 (5-68)||(22090180-22090244)
chr1 (5-68)||(51440899-51440963)
[»] chr3 (15 HSPs)
chr3 (1-68)||(22152-22220)
chr3 (1-68)||(53519672-53519740)
chr3 (3-68)||(35033228-35033294)
chr3 (1-68)||(5168912-5168980)
chr3 (5-68)||(48953555-48953619)
chr3 (5-68)||(38060515-38060579)
chr3 (1-68)||(47233730-47233798)
chr3 (1-67)||(25191457-25191524)
chr3 (5-68)||(48508319-48508383)
chr3 (5-44)||(51447869-51447908)
chr3 (5-61)||(19757984-19758040)
chr3 (5-68)||(28245521-28245585)
chr3 (5-68)||(33272157-33272221)
chr3 (5-68)||(52138884-52138948)
chr3 (5-68)||(54279104-54279168)
[»] chr5 (16 HSPs)
chr5 (5-68)||(38685051-38685115)
chr5 (10-68)||(13561520-13561579)
chr5 (7-68)||(16347512-16347574)
chr5 (5-68)||(1287713-1287777)
chr5 (5-68)||(4496468-4496532)
chr5 (13-68)||(14911264-14911320)
chr5 (5-68)||(20456857-20456921)
chr5 (5-68)||(24178594-24178658)
chr5 (6-68)||(12492518-12492581)
chr5 (5-61)||(2075615-2075672)
chr5 (5-61)||(2915636-2915693)
chr5 (1-68)||(3301924-3301992)
chr5 (5-68)||(14665798-14665862)
chr5 (5-68)||(28976993-28977057)
chr5 (5-44)||(26884847-26884886)
chr5 (5-35)||(1275348-1275378)
[»] chr4 (21 HSPs)
chr4 (1-68)||(27983273-27983341)
chr4 (1-68)||(32479118-32479186)
chr4 (5-68)||(48174227-48174291)
chr4 (5-68)||(436313-436377)
chr4 (5-68)||(1777151-1777215)
chr4 (5-68)||(4440937-4441001)
chr4 (5-68)||(31959948-31960012)
chr4 (5-68)||(46582959-46583023)
chr4 (5-68)||(52569649-52569713)
chr4 (5-68)||(56375374-56375438)
chr4 (1-67)||(27450314-27450381)
chr4 (5-68)||(37797936-37797999)
chr4 (1-68)||(39100670-39100738)
chr4 (5-68)||(39708517-39708581)
chr4 (5-68)||(43434008-43434072)
chr4 (5-44)||(26037664-26037703)
chr4 (5-47)||(23906453-23906495)
chr4 (9-37)||(20131165-20131193)
chr4 (5-68)||(48622677-48622741)
chr4 (5-68)||(50287046-50287110)
chr4 (5-68)||(50679588-50679652)
[»] scaffold0045 (1 HSPs)
scaffold0045 (5-44)||(86768-86807)
[»] scaffold0018 (1 HSPs)
scaffold0018 (5-68)||(31552-31616)
[»] scaffold0570 (1 HSPs)
scaffold0570 (5-68)||(1082-1146)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 41196226 - 41196067
Alignment:
Q  78 ttatgtaaaaccggggtaaaaacaagggtgcacatgatgtgtttggagatgcggacgcgcaaccaaattacattacatacccatagttgtagcacttcta 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||    
T  41196226 ttatgtaaaaccggggtaaaaacaagggtgcacatgatgtgtttggagatgcggacgcgcaaccaaatt-----acatacccatagttgtagcacttcta 41196132  T
Q  178 tgttggtgcatataatataaatccagtggtcatgannnnnnnnnnaatgctcataaatcttctaatataact 249  Q
    |||||||||     |||||||||||||||||||||          |||||||||||||||||||||||||||    
T  41196131 tgttggtgc-----atataaatccagtggtcatga--ttttttttaatgctcataaatcttctaatataact 41196067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 41197430 - 41197361
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaaaa--gtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  41197430 cgttgtaagaagagtagatcaaatggaggagagtcaggttaaaaaaaggtagagaaagacctaagaaaac 41197361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 38429964 - 38430032
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||    
T  38429964 cgttgtaagaagagtagatcaaatggaggagagtcaggttaaaagaagtagaggaagacctaagaaaac 38430032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 41763244 - 41763176
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaaaa-gtagagaaagacctaagaaaac 68  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  41763244 cgttgtaagaaaagtagatcaaatggaggagagtcaggttaaaaaaggtagaggaagacctaagaaaac 41763176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 451846 - 451782
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaaaa-gtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||||| |||||| |||||||| ||||||    
T  451846 gtaagaagagtagatcaaatggaggagagtcaagttaaaaaaggtagaggaagacctaggaaaac 451782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 11992310 - 11992242
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||| |||||||| |||||||||||||||||||||||||||| | ||| || |||||||||||||||    
T  11992310 cgttgttagaagagtggatcaaatggaggagagtcgggttaaaagaggtaaaggaagacctaagaaaac 11992242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 23997694 - 23997762
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||||||| |||||||| | || ||  |||||||||||||||    
T  23997694 cgttgtaagaagagtagatcaaatggaggagagtcaggttaaaagaggtggaagaagacctaagaaaac 23997762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 12734783 - 12734822
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa 44  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  12734783 gtaagaagagtagatcaaatggaggagagtcaggttaaaa 12734822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 39029661 - 39029728
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaa 67  Q
    |||||||||||||||||||||| ||||||| |||| ||| |||| | |||||| ||||||||||||||    
T  39029661 cgttgtaagaagagtagatcaattggaggaaagtcaggtaaaaagaggtagaggaagacctaagaaaa 39029728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 2610672 - 2610736
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||| |||||||  ||||||| | |||||| |||||||| ||||||    
T  2610672 gtaagaagagtagatcaaatggatgagagtcaagttaaaagaggtagaggaagacctatgaaaac 2610736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 28508762 - 28508826
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||| ||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  28508762 gtaataagagtagatcaaatggaggagagtcaagttaaaagatgtagaggaagacctaggaaaac 28508826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 36183535 - 36183599
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||| |||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  36183535 gtaagaagagtagataaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 36183599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 8180864 - 8180903
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa 44  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  8180864 gtaagaagagtagatcaaatggaggagagtcaagttaaaa 8180903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 24583830 - 24583791
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa 44  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  24583830 gtaagaagagtagatcaaatggaggagagtcaagttaaaa 24583791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 25834761 - 25834791
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggag 31  Q
    |||||||||||||||||||||||||||||||    
T  25834761 cgttgtaagaagagtagatcaaatggaggag 25834791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 3243851 - 3243787
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||| |||||||||||||||||||||  ||||||| | | |||| |||||||| ||||||    
T  3243851 gtaagaagaatagatcaaatggaggagagtcaagttaaaagaggcagaggaagacctaggaaaac 3243787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 3866156 - 3866184
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagag 33  Q
    |||||||||||||||||||||||||||||    
T  3866156 gtaagaagagtagatcaaatggaggagag 3866184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 4807679 - 4807743
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||| |||||||||  ||||||| | |||||  |||||||| ||||||    
T  4807679 gtaagaagagtagatcaaatgaaggagagtcaagttaaaagaggtagatgaagacctaggaaaac 4807743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 7326358 - 7326294
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||| |||||||||  ||||||| | |||||| ||||| || ||||||    
T  7326358 gtaagaagagtagatcaaatgaaggagagtcaagttaaaagaggtagaggaagacataggaaaac 7326294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 45367827 - 45367759
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||| ||||| ||||||||||||||||||||||  ||||||| | |||||| |||||  ||||||||    
T  45367827 cgttgttagaagggtagatcaaatggaggagagtctagttaaaagaggtagaggaagactcaagaaaac 45367759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 42469929 - 42469861
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||||||||||    
T  42469929 cgttgtaagaagagtagatcaaatggaggagagtcaggttaaaagaggtagaggaagacctaagaaaac 42469861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 42854206 - 42854138
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||||||||||    
T  42854206 cgttgtaagaagagtagatcaaatggaggagagtcaggttaaaagaggtagaggaagacctaagaaaac 42854138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 40813408 - 40813472
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||||||||||    
T  40813408 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaagaaaac 40813472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 2796635 - 2796701
Alignment:
Q  3 ttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||| ||||||||||||||||||  ||||||| | |||||| |||||||||||||||    
T  2796635 ttgtaagaagagtaaatcaaatggaggagagtcatgttaaaagaggtagaggaagacctaagaaaac 2796701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 11523921 - 11523857
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  11523921 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 11523857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 18125257 - 18125313
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaaaagtagagaaagaccta 61  Q
    ||||||| ||||||||||||||||||||||||||||||| | ||||||  |||||||    
T  18125257 gtaagaatagtagatcaaatggaggagagtcgggttaaagaggtagagggagaccta 18125313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 37077835 - 37077874
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa 44  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  37077835 gtaagaagagtagatcaaatggaggagagtcgggtcaaaa 37077874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 8932785 - 8932851
Alignment:
Q  3 ttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||| |||||||||| |||||||  ||||||| | |||||| |||||||||||||||    
T  8932785 ttgtaagaagagtaaatcaaatggaagagagtcaagttaaaagaggtagaggaagacctaagaaaac 8932851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 12025869 - 12025937
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||| ||| |||||| |||||||| | ||| |  |||||||||||||||    
T  12025869 cgttgtaagaagagtagatcaaatagagaagagtcaggttaaaagaggtaaatgaagacctaagaaaac 12025937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 36545233 - 36545297
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||| ||||  ||||||| | |||||| |||||||| ||||||    
T  36545233 gtaagaagagtagatcaaatggaggatagtcaagttaaaagacgtagaggaagacctaggaaaac 36545297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 36565439 - 36565375
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||| ||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  36565439 gtaagaagggtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 36565375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 21121230 - 21121292
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaa 66  Q
    ||||||||||||||||||||||| ||||||  |||||||| | ||||||  ||||||||||||    
T  21121230 gtaagaagagtagatcaaatggacgagagttaggttaaaagaggtagagggagacctaagaaa 21121292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26905108 - 26905074
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtc 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  26905108 cgttgtaagaagagtagatcaaatggaagagagtc 26905074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 12491336 - 12491272
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||| |||||||||  ||||||| | |||||  |||||||| ||||||    
T  12491336 gtaagaagagtagatcaaatgaaggagagtcaagttaaaagaggtagatgaagacctatgaaaac 12491272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 36395147 - 36395083
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||| ||||  ||||||| | ||| || |||||||| ||||||    
T  36395147 gtaagaagagtagatcaaatggaggaaagtcaagttaaaagaggtataggaagacctaggaaaac 36395083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 43281754 - 43281822
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||||||||||    
T  43281754 cgttgtaagaagagtagatcaaatggaggagagtcaggttaaaagaggtagaggaagacctaagaaaac 43281822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 12841473 - 12841409
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||||||||||    
T  12841473 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaagaaaac 12841409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 29650464 - 29650532
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||||||| |||||||| | ||| || || ||||||||||||    
T  29650464 cgttgtaagaagagtagatcaaatggaggagagtcaggttaaaagaggtaaaggaaaacctaagaaaac 29650532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 24598389 - 24598322
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaa 67  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||| | |||||| ||||||||||||||    
T  24598389 cgttgtaagaagagtagatcaaatgaaggtgagtcaggttaaaagaggtagaggaagacctaagaaaa 24598322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 44855369 - 44855306
Alignment:
Q  6 taagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||  ||||||| |||||||| |||||||| ||||||    
T  44855369 taagaagagtagatcaaatggaggagagtcaagttaaaagaagtagaggaagacctaggaaaac 44855306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 11594044 - 11594108
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  11594044 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 11594108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 31005307 - 31005371
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  31005307 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 31005371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 32631656 - 32631724
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||| |||||||| |||||||||||||| |||| |||||||| | |||||| |||||||||||||||    
T  32631656 cgttgttagaagagtggatcaaatggaggatagtcaggttaaaagaggtagaggaagacctaagaaaac 32631724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 33350004 - 33349940
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  33350004 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 33349940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 35559191 - 35559127
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  35559191 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 35559127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 37618029 - 37618093
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  37618029 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 37618093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 45836682 - 45836649
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  45836682 cgttgtaagaagagtagatcaaatggaggagagt 45836649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 13859206 - 13859142
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggtta-aaaaagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  |||| || | |||||| |||||||| ||||||    
T  13859206 gtaagaagagtagatcaaatggaggagagtcaagttagaagaggtagaggaagacctaggaaaac 13859142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 22349704 - 22349768
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||| ||| ||||||    
T  22349704 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagaactaggaaaac 22349768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 33073036 - 33073100
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||| ||||||  ||||||| | |||||| |||||||| ||||||    
T  33073036 gtaagaagagtagatcaaatggagaagagtcaagttaaaagaggtagaggaagacctaggaaaac 33073100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 36652076 - 36652140
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||| ||||| ||||  ||||||| | |||||| |||||||||||||||    
T  36652076 gtaagaagagtagatcaaatagaggatagtcaagttaaaagaggtagaggaagacctaagaaaac 36652140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 38607084 - 38607152
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggtta-aaaaagtagagaaagacctaagaaaac 68  Q
    |||||| ||||||||||||||||||||||||||||  |||| || | | |||| |||||||||||||||    
T  38607084 cgttgttagaagagtagatcaaatggaggagagtcacgttagaagagggagaggaagacctaagaaaac 38607152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 46356054 - 46355990
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| || ||||| ||||||    
T  46356054 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaaaacctaggaaaac 46355990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 31682799 - 31682736
Alignment:
Q  6 taagaagagtagatcaaatggaggagagtcgggtta-aaaaagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||  |||| || | |||||| |||||||| ||||||    
T  31682799 taagaagagtagatcaaatggaggagagtcaagttagaagaggtagaggaagacctaggaaaac 31682736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 23404502 - 23404540
Alignment:
Q  6 taagaagagtagatcaaatggaggagagtcgggttaaaa 44  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  23404502 taagaagagtagatcaaatggaggagagtcaggtcaaaa 23404540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 2885924 - 2885856
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||| ||||||||||||| ||||||||||||| ||| |||| | |||||  |||||||| ||||||    
T  2885924 cgttgtacgaagagtagatcagatggaggagagtcaggtcaaaagaggtagaagaagacctaggaaaac 2885856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 34869504 - 34869568
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||| ||||| ||||||||  ||||||| | |||||| |||||||| ||||||    
T  34869504 gtaagaagagtagatccaatggtggagagtcaagttaaaagaggtagaggaagacctaggaaaac 34869568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 35906399 - 35906335
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||| |||| |||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  35906399 gtaagaagagtatatcatatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 35906335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 36869440 - 36869412
Alignment:
Q  7 aagaagagtagatcaaatggaggagagtc 35  Q
    |||||||||||||||||||||||||||||    
T  36869440 aagaagagtagatcaaatggaggagagtc 36869412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 49029360 - 49029424
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||| || |||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  49029360 gtaagacgaatagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 49029424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 5258350 - 5258282
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||||||  ||||||| | ||||||||||||||||||||||    
T  5258350 cgttgtaagaagagtagatcaaatggaggagagtcatgttaaaagaggtagagaaagacctaagaaaac 5258282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 35043643 - 35043575
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||| |||||||  |||||||||||||||    
T  35043643 cgttgtaagaaaagtagatcaaatggacgagagtcaggttaaaagaagtagatgaagacctaagaaaac 35043575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 14030887 - 14030954
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaa 67  Q
    |||||||||||||||||||||||| | |||||||||| |||||| | |||||| ||||||||||||||    
T  14030887 cgttgtaagaagagtagatcaaatagtggagagtcggattaaaagaggtagaggaagacctaagaaaa 14030954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 32756006 - 32756069
Alignment:
Q  6 taagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||  ||||||| | ||||||||||||||| ||||||    
T  32756006 taagaagagtagatcaaatggaggagagtcaagttaaaagaggtagagaaagacctaggaaaac 32756069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 10100061 - 10099993
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||| ||||||||| | |||||| | |||||| |||||||| ||||||    
T  10100061 cgttgtaagaagagtagatcaaatgaaggagagtcagtttaaaagaggtagaggaagacctaggaaaac 10099993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 30031340 - 30031404
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||| |||||||| | ||||||  ||||||| ||||||    
T  30031340 gtaagaagagtagatcaaatggaggagagtcaggttaaaagaggtagagggagacctaggaaaac 30031404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 7133830 - 7133887
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagaccta 61  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| ||||||||    
T  7133830 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagaccta 7133887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 7136753 - 7136810
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagaccta 61  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| ||||||||    
T  7136753 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagaccta 7136810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 28085460 - 28085524
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||| ||||||  ||||||| | |||||| |||||||| ||||||    
T  28085460 gtaagaagagtagatcaaatggagtagagtcaagttaaaagaggtagaggaagacctaggaaaac 28085524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9706850 - 9706893
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa 44  Q
    |||||| ||||||||||||||||||||| |||||| ||||||||    
T  9706850 cgttgttagaagagtagatcaaatggagaagagtcaggttaaaa 9706893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 21352037 - 21351971
Alignment:
Q  3 ttgtaagaagagtagatcaaatggaggagagtcgggttaaaaaag-tagagaaagacctaagaaaac 68  Q
    |||| |||||| |||| ||||||||| |||||| |||||||| || ||||| |||||||||||||||    
T  21352037 ttgttagaagaatagaacaaatggagaagagtcaggttaaaagaggtagaggaagacctaagaaaac 21351971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 608239 - 608280
Alignment:
Q  3 ttgtaagaagagtagatcaaatggaggagagtcgggttaaaa 44  Q
    ||||||||||||| ||||||||||||||||||| | ||||||    
T  608239 ttgtaagaagagtggatcaaatggaggagagtcagattaaaa 608280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 5080924 - 5080988
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaaaag-tagagaaagacctaagaaaac 68  Q
    |||||||||||| ||||||||||||||||||  ||||||| || ||||  |||||||| ||||||    
T  5080924 gtaagaagagtaaatcaaatggaggagagtctcgttaaaagagatagatgaagacctaggaaaac 5080988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 20427838 - 20427770
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggtta-aaaaagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||| ||||||| |||| ||||| ||||| || | || ||| |||||||||||||||    
T  20427838 cgttgtaagaagagtaaatcaaatagaggggagtcaggttacaagaggttgaggaagacctaagaaaac 20427770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4001657 - 4001589
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||||||||||    
T  4001657 cgttgtaagaagagtagatcaaatggaggagagtcaggttaaaagaggtagaggaagacctaagaaaac 4001589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 32082947 - 32082879
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||||||||||    
T  32082947 cgttgtaagaagagtagatcaaatggaggagagtcaggttaaaagaggtagaggaagacctaagaaaac 32082879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 696349 - 696417
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||| ||||||||||||| |||||||| | |||||| |||||||||||||||    
T  696349 cgttgtaagaagagtagatcatatggaggagagtcaggttaaaagaggtagaggaagacctaagaaaac 696417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 15086014 - 15086082
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||| |||||||||||||||||||||||||||| | |||||| | |||||| |||||||||||||||    
T  15086014 cgttgttagaagagtagatcaaatggaggagagtcagattaaaagaggtagaggaagacctaagaaaac 15086082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 37311955 - 37311889
Alignment:
Q  3 ttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||||| |||||||| | ||||||  ||||||| ||||||    
T  37311955 ttgtaagaagagtagatcaaatggaggagagtcaggttaaaagaggtagaggtagacctaggaaaac 37311889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 1210829 - 1210893
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  1210829 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 1210893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 8672002 - 8672066
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  8672002 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 8672066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 34792547 - 34792483
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  34792547 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 34792483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 43240577 - 43240513
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaaaa-gtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||   ||||||||| |||||| |||||||| ||||||    
T  43240577 gtaagaagagtagatcaaatggaggagagttaagttaaaaaaggtagaggaagacctaggaaaac 43240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 49347591 - 49347527
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  49347591 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 49347527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 51602140 - 51602204
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  51602140 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 51602204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 32231151 - 32231088
Alignment:
Q  6 taagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  32231151 taagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 32231088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 9592818 - 9592880
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaa 66  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||    
T  9592818 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaa 9592880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 4029206 - 4029270
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||| |||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  4029206 gtaagaagaatagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 4029270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 30202328 - 30202264
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||| |||||||  ||||||| | |||||| |||||||| ||||||    
T  30202328 gtaagaagagtagatcaaatggacgagagtcaagttaaaagaggtagaggaagacctaggaaaac 30202264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 39318213 - 39318277
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||| |||||| ||||||||||||||||| |||| | |||||| |||||||| ||||||    
T  39318213 gtaagaagagcagatcagatggaggagagtcgggtcaaaagaggtagaggaagacctaggaaaac 39318277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 25979432 - 25979365
Alignment:
Q  2 gttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||| |||||||||| |||||||||||||| |||||||| | |||||| |||||| | ||||||    
T  25979432 gttgtaaggagagtagatcgaatggaggagagtcaggttaaaagaggtagaggaagacccatgaaaac 25979365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8391852 - 8391886
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtc 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  8391852 cgttgtaagaagagtagatcaaatgaaggagagtc 8391886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 22090180 - 22090244
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||| |||||||||||||||||||||||  |||||||   |||||| |||||||| ||||||    
T  22090180 gtaagaaaagtagatcaaatggaggagagtcaagttaaaaggggtagaggaagacctaggaaaac 22090244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 51440963 - 51440899
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaa-aaagtagagaaagacctaagaaaac 68  Q
    |||||||||||||| ||||||||||||||||  ||||||  | |||||| |||||||| ||||||    
T  51440963 gtaagaagagtagagcaaatggaggagagtcaagttaaaggaggtagaggaagacctaggaaaac 51440899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 22152 - 22220
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||| |||||||||||||||||||||||| | |||||| ||||| |||||||||    
T  22152 cgttgtaagaagagtagattaaatggaggagagtcgggttaaaagaggtagaggaagacttaagaaaac 22220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 53519672 - 53519740
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||||||||||    
T  53519672 cgttgtaagaagagtagatcaaatggaggagagtcatgttaaaagaggtagaggaagacctaagaaaac 53519740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 35033228 - 35033294
Alignment:
Q  3 ttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||| |||||||||||||||||| |||||||| | |||||| |||||||||||||||    
T  35033228 ttgtaagaagagtaaatcaaatggaggagagtcaggttaaaagaggtagaggaagacctaagaaaac 35033294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 5168912 - 5168980
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||| ||||||||||||||||||||||||||||  ||||||| | |||||| |||||||||||||||    
T  5168912 cgttgttagaagagtagatcaaatggaggagagtctagttaaaagaggtagaggaagacctaagaaaac 5168980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 48953619 - 48953555
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||||||| |||||||| ||||||    
T  48953619 gtaagaagagtagatcagatggaggagagtcgggtcaaaagaagtagaggaagacctaggaaaac 48953555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 38060515 - 38060579
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaaaa-gtagagaaagacctaagaaaac 68  Q
    ||||||||||||||| ||||||||||||||| |||||||||| ||||||  ||||||| ||||||    
T  38060515 gtaagaagagtagattaaatggaggagagtcaggttaaaaaaggtagagggagacctaggaaaac 38060579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 47233798 - 47233730
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||| |||||||||||||||||||||||||||| |||||||| | || ||  |||||||||||||||    
T  47233798 cgttgttagaagagtagatcaaatggaggagagtcaggttaaaagatgttgaagaagacctaagaaaac 47233730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 25191457 - 25191524
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaa 67  Q
    |||||||||||||| |||||||||||||||||| | |||||||| | |||||| |||| |||||||||    
T  25191457 cgttgtaagaagagaagatcaaatggaggagagcccggttaaaagaggtagaggaagaactaagaaaa 25191524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 48508319 - 48508383
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||| ||||||||||||| ||| |||| | |||||| |||||||| ||||||    
T  48508319 gtaagaagagtagatcagatggaggagagtcaggtcaaaagaggtagaggaagacctaggaaaac 48508383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 51447908 - 51447869
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa 44  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  51447908 gtaagaagagtagatcaaatggaggagagtcaagttaaaa 51447869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 19757984 - 19758040
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaaaagtagagaaagaccta 61  Q
    ||||||||||||||||| ||||||||||||  | | ||||| |||||| ||||||||    
T  19757984 gtaagaagagtagatcagatggaggagagttagatcaaaaaggtagaggaagaccta 19758040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 28245521 - 28245585
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||| ||||||||||||||||||  ||||||| | |||||  |||||||| ||||||    
T  28245521 gtaagaagagtatatcaaatggaggagagtcaagttaaaagaggtagatgaagacctaggaaaac 28245585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 33272221 - 33272157
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||| ||| ||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  33272221 gtaagaagtgtatatcaaatggaggagagtcaagttaaaagaggtagaggaagacctacgaaaac 33272157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 52138884 - 52138948
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||| ||||| |||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  52138884 gtaagaagaatagattaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 52138948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 54279104 - 54279168
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||| ||||||||||||||||||||||||||  ||||||| | |||||  |||||||| ||||||    
T  54279104 gtaaaaagagtagatcaaatggaggagagtcaagttaaaagaggtagaagaagacctaggaaaac 54279168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 38685051 - 38685115
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||| ||||||    
T  38685051 gtaagaagagtagatcaaatggaggagagtcaggttaaaagaggtagaggaagacctaggaaaac 38685115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 13561579 - 13561520
Alignment:
Q  10 aagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||| |||||||| | |||||| |||||||||||||||    
T  13561579 aagagtagatcaaatggaggagagtcaggttaaaagaggtagaggaagacctaagaaaac 13561520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 16347574 - 16347512
Alignment:
Q  7 aagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||| |||||||| | |||||| |||||||| ||||||    
T  16347574 aagaagagtagatcaaatggaggagagtcaggttaaaagaggtagaggaagacctaggaaaac 16347512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 1287777 - 1287713
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  1287777 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 1287713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 4496468 - 4496532
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  4496468 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 4496532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 14911264 - 14911320
Alignment:
Q  13 agtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||| |||||||||||||||||| | |||||| |||||||||||||||    
T  14911264 agtagatcaaatgaaggagagtcgggttaaaagaggtagaggaagacctaagaaaac 14911320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 20456857 - 20456921
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  20456857 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctacgaaaac 20456921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 24178594 - 24178658
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  24178594 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 24178658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 12492581 - 12492518
Alignment:
Q  6 taagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  12492581 taagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 12492518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 2075672 - 2075615
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagaccta 61  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| ||||||||    
T  2075672 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagaccta 2075615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 2915693 - 2915636
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagaccta 61  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| ||||||||    
T  2915693 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagaccta 2915636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3301924 - 3301992
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||| |||||| |  |||||||||||||||||| |||||||| | |||||| |||||||||||||||    
T  3301924 cgttgttagaagaatgaatcaaatggaggagagtcaggttaaaagaggtagaggaagacctaagaaaac 3301992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 14665798 - 14665862
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||| |||||| |||||||| | ||||||  ||||||| ||||||    
T  14665798 gtaagaagagtagatcaaatggagcagagtcaggttaaaagaggtagagggagacctaggaaaac 14665862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 28977057 - 28976993
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||| ||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  28977057 gtaagaagggtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 28976993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 26884886 - 26884847
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa 44  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  26884886 gtaagaagagtagatcagatggaggagagtcgggtcaaaa 26884847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 1275348 - 1275378
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtc 35  Q
    |||||||||||||||||||||||||||||||    
T  1275348 gtaagaagagtagatcaaatggaggagagtc 1275378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 27983273 - 27983341
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||| |||||||||||||||||| |||||||| | |||||| ||||| |||||||||    
T  27983273 cgttgtaagaagagtatatcaaatggaggagagtcaggttaaaagaggtagaggaagacataagaaaac 27983341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 32479118 - 32479186
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggtt-aaaaaagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||||||||||||| | |||| ||| | |||||| |||||||||||||||    
T  32479118 cgttgtaagaagagtagatcaaatggaggagagacaggttgaaagaggtagaggaagacctaagaaaac 32479186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 48174291 - 48174227
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||||||||||    
T  48174291 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaagaaaac 48174227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 436313 - 436377
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  436313 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 436377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 1777215 - 1777151
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  1777215 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 1777151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 4440937 - 4441001
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  4440937 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 4441001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 31960012 - 31959948
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  31960012 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 31959948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 46583023 - 46582959
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  46583023 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctatgaaaac 46582959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 52569713 - 52569649
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  52569713 gtaagaagagtagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctacgaaaac 52569649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 56375374 - 56375438
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||| |||||||||||||||  ||||||| | |||||| |||||||||||||||    
T  56375374 gtaagaagagtagataaaatggaggagagtcaagttaaaagaggtagaggaagacctaagaaaac 56375438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 27450381 - 27450314
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaa 67  Q
    |||||||||||||||||||||||||||| ||| || |||||||| | ||| || ||||||||||||||    
T  27450381 cgttgtaagaagagtagatcaaatggagtagaatcaggttaaaagaggtaaaggaagacctaagaaaa 27450314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 37797936 - 37797999
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaaaagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||||| ||||||| |||||||| | ||||| |||| ||| ||||||    
T  37797936 gtaagaagagtagatcaaatggatgagagtcaggttaaaagattagaggaagatctaggaaaac 37797999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 39100738 - 39100670
Alignment:
Q  1 cgttgtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||||||| ||||| || |||| |||||||| | |||||| |||||||| ||||||    
T  39100738 cgttgtaagaagagtagatcagatggaagatagtcaggttaaaagaggtagaggaagacctaggaaaac 39100670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 39708517 - 39708581
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||||| ||||||||||||| ||| |||| | |||||| |||||||| ||||||    
T  39708517 gtaagaagagtagatcagatggaggagagtcaggtcaaaagaggtagaggaagacctaggaaaac 39708581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 43434008 - 43434072
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||| ||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  43434008 gtaagaagagtaaatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 43434072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 26037703 - 26037664
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa 44  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  26037703 gtaagaagagtagatcagatggaggagagtcaggttaaaa 26037664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 23906495 - 23906453
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaaaag 47  Q
    ||||||||||||||| |||||||||||||||  ||||||||||    
T  23906495 gtaagaagagtagattaaatggaggagagtcaagttaaaaaag 23906453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 20131193 - 20131165
Alignment:
Q  9 gaagagtagatcaaatggaggagagtcgg 37  Q
    |||||||||||||||||||||||||||||    
T  20131193 gaagagtagatcaaatggaggagagtcgg 20131165  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 48622741 - 48622677
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    ||||||| || ||||||||||||||||||||  ||||||| | |||||| |||||||| ||||||    
T  48622741 gtaagaaaagaagatcaaatggaggagagtcaagttaaaagaggtagaggaagacctaggaaaac 48622677  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 50287046 - 50287110
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||| ||||||||||||||  ||||||| | |||||  |||||||| ||||||    
T  50287046 gtaagaagagtagatcgaatggaggagagtcaagttaaaagaggtagaagaagacctatgaaaac 50287110  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 50679588 - 50679652
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggtta-aaaaagtagagaaagacctaagaaaac 68  Q
    ||||||||||||||| |||||||||||||||  |||| || | |||||| |||||||| ||||||    
T  50679588 gtaagaagagtagattaaatggaggagagtcaagttagaagaggtagaggaagacctaggaaaac 50679652  T

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Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 86807 - 86768
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa 44  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  86807 gtaagaagagtagatcaaatggaggagagtcaggttaaaa 86768  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 31552 - 31616
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||||||||||  ||||||| | |||||| |||||| | ||||||    
T  31552 gtaagaagagtagatcaaatggaggagagtcaagttaaaagatgtagaggaagacccaggaaaac 31616  T

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Target: scaffold0570 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 1146 - 1082
Alignment:
Q  5 gtaagaagagtagatcaaatggaggagagtcgggttaaaa-aagtagagaaagacctaagaaaac 68  Q
    |||||||||||||||||||||||| ||||||   |||||| | |||||| |||||||| ||||||    
T  1146 gtaagaagagtagatcaaatggagaagagtcaaattaaaagaggtagaggaagacctaggaaaac 1082  T

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