View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18110_low_14 (Length: 210)

Name: NF18110_low_14
Description: NF18110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18110_low_14
NF18110_low_14
[»] chr5 (14 HSPs)
chr5 (18-194)||(2628116-2628292)
chr5 (40-140)||(34764761-34764861)
chr5 (40-194)||(29231249-29231403)
chr5 (58-141)||(26564805-26564888)
chr5 (40-194)||(7056901-7057054)
chr5 (40-137)||(39329374-39329471)
chr5 (73-141)||(3387131-3387199)
chr5 (39-141)||(31114167-31114269)
chr5 (40-141)||(19100204-19100305)
chr5 (84-141)||(32076657-32076714)
chr5 (57-117)||(34510718-34510776)
chr5 (101-194)||(8229128-8229221)
chr5 (75-192)||(27925144-27925261)
chr5 (39-119)||(8192714-8192794)
[»] chr2 (9 HSPs)
chr2 (39-194)||(38221784-38221939)
chr2 (40-183)||(40498389-40498532)
chr2 (50-194)||(42794923-42795067)
chr2 (42-147)||(30382964-30383069)
chr2 (40-128)||(7017696-7017783)
chr2 (50-138)||(14749422-14749510)
chr2 (40-99)||(21812246-21812305)
chr2 (40-190)||(26352394-26352544)
chr2 (75-115)||(35298312-35298352)
[»] chr8 (11 HSPs)
chr8 (39-141)||(17749069-17749171)
chr8 (40-141)||(11789545-11789646)
chr8 (50-194)||(11755849-11755993)
chr8 (42-141)||(25429872-25429971)
chr8 (40-141)||(24888940-24889041)
chr8 (47-117)||(32855893-32855963)
chr8 (50-141)||(9409782-9409873)
chr8 (50-117)||(23877574-23877642)
chr8 (110-194)||(24728771-24728855)
chr8 (40-125)||(13003232-13003316)
chr8 (40-99)||(18928732-18928792)
[»] chr7 (15 HSPs)
chr7 (70-192)||(48152829-48152951)
chr7 (40-136)||(43495924-43496020)
chr7 (40-141)||(47843938-47844039)
chr7 (40-141)||(45492008-45492109)
chr7 (40-133)||(45648395-45648488)
chr7 (40-137)||(3751667-3751764)
chr7 (52-99)||(5474782-5474829)
chr7 (51-113)||(40836268-40836329)
chr7 (39-108)||(34471644-34471713)
chr7 (50-186)||(42040639-42040775)
chr7 (73-141)||(45804784-45804852)
chr7 (40-99)||(2185909-2185968)
chr7 (40-141)||(24699693-24699794)
chr7 (40-137)||(48138353-48138450)
chr7 (50-194)||(9229526-9229670)
[»] chr6 (7 HSPs)
chr6 (40-184)||(2988299-2988443)
chr6 (40-194)||(2032528-2032682)
chr6 (75-141)||(10229295-10229361)
chr6 (50-141)||(688261-688352)
chr6 (74-141)||(12283899-12283966)
chr6 (39-141)||(17533561-17533663)
chr6 (74-159)||(12312228-12312313)
[»] chr1 (13 HSPs)
chr1 (76-184)||(11767853-11767961)
chr1 (40-128)||(4966545-4966635)
chr1 (40-194)||(31513789-31513942)
chr1 (52-141)||(40693780-40693869)
chr1 (40-120)||(4973253-4973333)
chr1 (39-194)||(50726460-50726615)
chr1 (21-117)||(13558358-13558450)
chr1 (40-141)||(14286869-14286970)
chr1 (40-141)||(40032493-40032598)
chr1 (50-141)||(17116098-17116189)
chr1 (54-125)||(30902549-30902620)
chr1 (60-183)||(38683113-38683235)
chr1 (40-126)||(51899104-51899192)
[»] chr4 (13 HSPs)
chr4 (40-147)||(1052214-1052321)
chr4 (40-143)||(53586259-53586362)
chr4 (39-141)||(4214102-4214204)
chr4 (42-141)||(47923120-47923219)
chr4 (71-141)||(2295225-2295295)
chr4 (39-136)||(6008048-6008145)
chr4 (50-119)||(47724773-47724842)
chr4 (149-183)||(2243121-2243155)
chr4 (70-115)||(40217435-40217480)
chr4 (40-120)||(2243034-2243114)
chr4 (122-194)||(6255205-6255277)
chr4 (70-126)||(27675304-27675360)
chr4 (50-194)||(34075340-34075484)
[»] scaffold0565 (1 HSPs)
scaffold0565 (40-141)||(7753-7854)
[»] scaffold0495 (1 HSPs)
scaffold0495 (50-141)||(6013-6102)
[»] chr3 (17 HSPs)
chr3 (40-142)||(36504682-36504784)
chr3 (40-127)||(7629366-7629453)
chr3 (70-141)||(52695765-52695836)
chr3 (72-141)||(39615240-39615309)
chr3 (40-141)||(43471627-43471728)
chr3 (40-141)||(46979524-46979625)
chr3 (74-194)||(45472410-45472529)
chr3 (71-143)||(52204326-52204398)
chr3 (50-129)||(27164208-27164287)
chr3 (50-141)||(36172119-36172210)
chr3 (40-153)||(24120901-24121014)
chr3 (40-147)||(24611633-24611740)
chr3 (50-136)||(12176667-12176753)
chr3 (83-141)||(38489895-38489953)
chr3 (50-99)||(40614725-40614774)
chr3 (84-124)||(17064033-17064073)
chr3 (50-138)||(35433357-35433445)
[»] scaffold0051 (1 HSPs)
scaffold0051 (50-194)||(53607-53751)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 2628116 - 2628292
Alignment:
Q  18 taaccttgtgtatctgccgcaaagtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||||| | | ||||||||||||    
T  2628116 taaccttgtgtatctgccgcaaagtatcatacaagtatccgttaaaatatattttaaaaaattaaatacttatttctgatacaccataggtgcgtatccg 2628215  T
Q  118 cgaatatccgtagagtatcggtattcaatatatatccaatacgagtatatatccgttttggagtatccggacttcat 194  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2628216 cgaatatccgtagagtatcggtatccaatatatatccaatacgaatatatatccgttttggagtatccggacttcat 2628292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 34764761 - 34764861
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    ||||||||| |||||| || ||||||||  ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| |||    
T  34764761 agtatcatataagtattcgataaaatatttttttaaaatttaaataattaattctgatacttcgtgggtgcgtatccgcgagtatccgtggagtattggt 34764860  T
Q  140 a 140  Q
    |    
T  34764861 a 34764861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 40 - 194
Target Start/End: Original strand, 29231249 - 29231403
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    ||||||| | ||||||||| ||||||||   ||||||||| ||||||||||||| ||||| || ||| | |||||| |||||||||||| ||||||||||    
T  29231249 agtatcacataagtatccgataaaatatttattaaaaattaaaataattaattccgatacttcttggatacgtatctgcgaatatccgtggagtatcggt 29231348  T
Q  140 attcaatatatatccaatacgagtatatatccgttttggagtatccggacttcat 194  Q
    || | |||  |||||  |||| | | || ||||||||||||||||||||||||||    
T  29231349 atccgatacgtatccggtacgggcacatctccgttttggagtatccggacttcat 29231403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 26564888 - 26564805
Alignment:
Q  58 gttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    ||||||||||  |||||||||||||||||||||||| ||||| |||||||||||||||| | |||||| || ||||||| ||||    
T  26564888 gttaaaatattttttaaaaatttaaataattaattccgatacttcgtgggtgcgtatccacaaatatctgtggagtatcagtat 26564805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 194
Target Start/End: Complemental strand, 7057054 - 7056901
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    |||||| || ||||||| | ||||||||  |||||||||| ||||| ||||||  ||||| |||||||| ||||| | ||| ||||||||||||||||||    
T  7057054 agtatcctataagtatcagataaaatattttttaaaaattaaaata-ttaatttcgatacttcgtgggtacgtattcacgagtatccgtagagtatcggt 7056956  T
Q  140 attcaatatatatccaatacgagtatatatccgttttggagtatccggacttcat 194  Q
    || | |||  ||||  ||||  |||  | ||||||||||||||||| ||||||||    
T  7056955 atccgatacttatctgatacaggtacgtctccgttttggagtatccagacttcat 7056901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 39329471 - 39329374
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcg 137  Q
    |||||| || || |||||| |||||||||  ||| ||||| ||||||||||||| ||||| |||||| | | |||||||||||||||| | |||||||    
T  39329471 agtatcttataaatatccgataaaatatatattataaattaaaataattaattccgatacttcgtggatacatatccgcgaatatccgcaaagtatcg 39329374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 3387199 - 3387131
Alignment:
Q  73 aaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    ||||||| |||||||||||| |||||| ||||||||  |||||||||||||||  | ||||||||||||    
T  3387199 aaaaattaaaataattaattttgatacttcgtgggtatgtatccgcgaatatctttggagtatcggtat 3387131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 31114167 - 31114269
Alignment:
Q  39 aagtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcgg 138  Q
    |||||| ||| ||||||| | ||| ||||  |||||||||| ||||||||||||||||||| |  ||| | || |||||||| ||| ||||||||||| |    
T  31114167 aagtattatataagtatctgataatatattttttaaaaattaaaataattaattctgatactttatggatacgcatccgcgagtatgcgtagagtatcag 31114266  T
Q  139 tat 141  Q
    |||    
T  31114267 tat 31114269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 19100204 - 19100305
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    ||||||| | ||||||||| ||||||||   ||||||||| ||||||||||||   |||| |||| ||| | ||||||||| |||||||  |||||||||    
T  19100204 agtatcacataagtatccgataaaatatttattaaaaattaaaataattaatttcaatacttcgtaggtacatatccgcgagtatccgtgaagtatcggt 19100303  T
Q  140 at 141  Q
    ||    
T  19100304 at 19100305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 32076657 - 32076714
Alignment:
Q  84 taattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    |||||||||||||||  | |||||| ||||||||||||||||| || |||||||||||    
T  32076657 taattaattctgatattttgtgggtacgtatccgcgaatatccttaaagtatcggtat 32076714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 34510776 - 34510718
Alignment:
Q  57 cgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccg 117  Q
    ||||| |||||  ||||||||||||||||||||||||  |||| |||||||||||||||||    
T  34510776 cgttagaatattttttaaaaatttaaataattaattc--atacttcgtgggtgcgtatccg 34510718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 194
Target Start/End: Complemental strand, 8229221 - 8229128
Alignment:
Q  101 tcgtgggtgcgtatccgcgaatatccgtagagtatcggtattcaatatatatccaatacgagtatatatccgttttggagtatccggacttcat 194  Q
    ||||||||||  |||||||| ||||||| ||||||||||||   |||  ||||| ||||| |||  | |||||||||| ||||||||| |||||    
T  8229221 tcgtgggtgcccatccgcgagtatccgtggagtatcggtatctgatacgtatccgatacgggtacgtctccgttttggggtatccggatttcat 8229128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 27925261 - 27925144
Alignment:
Q  75 aaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtattcaatatatatccaatacgagtatatatccgtt 174  Q
    ||||| |||||||||| || ||||| || | ||| | |||||||||||||| || ||| ||||||||   |||  ||||| |||||||||  | || |||    
T  27925261 aaattaaaataattaactccgatacttcataggtacatatccgcgaatatcagtggaggatcggtatctgatacgtatccgatacgagtacgtctctgtt 27925162  T
Q  175 ttggagtatccggacttc 192  Q
    ||||||||||||| ||||    
T  27925161 ttggagtatccgggcttc 27925144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 8192794 - 8192714
Alignment:
Q  39 aagtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcg 119  Q
    ||||||| || ||||||||  ||||||||  |||||||||||  | |||||||||  |||| || ||||||||||||||||    
T  8192794 aagtatcctataagtatcccgtaaaatattttttaaaaatttttaaaattaattcaaatacttcatgggtgcgtatccgcg 8192714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 39 - 194
Target Start/End: Original strand, 38221784 - 38221939
Alignment:
Q  39 aagtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcgg 138  Q
    ||||||| || |||||| |||||||||||  |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||    
T  38221784 aagtatcgtataagtattcgttaaaatattttttaaaaatttaaataattaattccgatacttcgtgggtgcgtatccgcgagtatccgtggagtatcgg 38221883  T
Q  139 tattcaatatatatccaatacgagtatatatccgttttggagtatccggacttcat 194  Q
    ||| |||||  ||||| ||||| |||  | ||||||||||||||||  ||||||||    
T  38221884 tatccaatacgtatccgatacgggtacgtctccgttttggagtatctagacttcat 38221939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 40 - 183
Target Start/End: Complemental strand, 40498532 - 40498389
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    |||||| || ||||||||||||||||||  ||||||||||||||||||||| |  ||||| |||||||||||||||| ||| |||| || ||||||||||    
T  40498532 agtatcttataagtatccgttaaaatattttttaaaaatttaaataattaagttcgatacttcgtgggtgcgtatccacgagtatctgtggagtatcggt 40498433  T
Q  140 attcaatatatatccaatacgagtatatatccgttttggagtat 183  Q
    || | ||   |||||||||||  ||| | ||||||||| |||||    
T  40498432 atccgattcgtatccaatacggatatgtctccgttttgtagtat 40498389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 42794923 - 42795067
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtattcaatata 149  Q
    ||||||||| |||||| |   ||||||||| ||||||| ||||||||||| || ||| | ||||||||||| ||||||| |||||||||||||| |||      
T  42794923 aagtatccgataaaatgtttattaaaaattaaaataatcaattctgatacttcatggatacgtatccgcgagtatccgtggagtatcggtattccatacg 42795022  T
Q  150 tatccaatacgagtatatatccgttttggagtatccggacttcat 194  Q
    |||||| || | |||  | ||||||||||||||| ||| ||||||    
T  42795023 tatccagtatgggtacgtctccgttttggagtattcgggcttcat 42795067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 30382964 - 30383069
Alignment:
Q  42 tatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    ||||||| | ||||||| ||||||||  |||||||||| |||||||||| || ||||| |||||||| ||||||||||| ||| ||| ||||||| ||||    
T  30382964 tatcatatatgtatccgataaaatattttttaaaaattaaaataattaactccgatacttcgtgggtacgtatccgcgagtattcgtggagtatctgtat 30383063  T
Q  142 tcaata 147  Q
     |||||    
T  30383064 ccaata 30383069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 7017783 - 7017696
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgt 128  Q
    ||||||||| ||||||||| ||||||||  ||| |||||||||||||||||||| ||||  |||||||| ||||||||||| |||||||    
T  7017783 agtatcatataagtatccgataaaatatttttttaaaatttaaataattaattccgata-ttcgtgggtacgtatccgcgagtatccgt 7017696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 14749510 - 14749422
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcgg 138  Q
    ||||||||| |||||||||  ||  ||||| |||||||||||||||||||  ||||||| |||||||| || ||||||  |||||||||    
T  14749510 aagtatccgataaaatatatattttaaattaaaataattaattctgatactccgtgggtacgtatccgagagtatccgcggagtatcgg 14749422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 21812305 - 21812246
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatac 99  Q
    ||||||||| ||||||||  | ||||||| ||| |||||| |||||||||||||||||||    
T  21812305 agtatcatataagtatcccatcaaatatatttttaaaattaaaataattaattctgatac 21812246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 26352544 - 26352394
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    |||||| || ||||||||  |||||||||  ||  ||||| ||||||||||||| |||||   |||||| ||||||||||| |||| ||  |||||||||    
T  26352544 agtatcttataagtatccaataaaatatatattttaaattaaaataattaattccgatactcagtgggtacgtatccgcgagtatctgtgaagtatcggt 26352445  T
Q  140 attcaatatatatccaatacgagtatatatccgttttggagtatccggact 190  Q
    ||   |||  ||||  ||||| ||| || ||| ||||||||||| ||||||    
T  26352444 atctgatacgtatctgatacgggtacatctccattttggagtattcggact 26352394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 35298352 - 35298312
Alignment:
Q  75 aaatttaaataattaattctgatacatcgtgggtgcgtatc 115  Q
    ||||| ||||||||||||||||||| |||||||| ||||||    
T  35298352 aaattaaaataattaattctgatacttcgtgggtacgtatc 35298312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 17749069 - 17749171
Alignment:
Q  39 aagtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcgg 138  Q
    ||||||| || ||||||||||||||||||  |||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| || |||||||||    
T  17749069 aagtatcgtataagtatccgttaaaatattttttaaaaatttaaataattaattctgttacttcgtgggtgcgtatccgcaaatatctgtggagtatcgg 17749168  T
Q  139 tat 141  Q
    |||    
T  17749169 tat 17749171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 11789545 - 11789646
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    ||||||| ||||||||||| ||||||||   ||||||||| ||||||||||||||||||| |||||| | ||||||||||| ||||||| ||||||||||    
T  11789545 agtatcacacaagtatccgataaaatatttattaaaaattaaaataattaattctgatacttcgtggatacgtatccgcgagtatccgtggagtatcggt 11789644  T
Q  140 at 141  Q
    ||    
T  11789645 at 11789646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 11755849 - 11755993
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtattcaatata 149  Q
    ||||||||| ||||||||  |||||||||| ||||| |||||| | |||| |||||  | |||||||  || |||||||| |||||| |||| |||||||    
T  11755849 aagtatccgataaaatattttttaaaaattaaaatatttaattataatacttcgtgaatacgtatccaagagtatccgtaaagtatcagtatccaatata 11755948  T
Q  150 tatccaatacgagtatatatccgttttggagtatccggacttcat 194  Q
    |||||||||||  ||| | ||||||||| |||||||||| |||||    
T  11755949 tatccaatacggatatgtctccgttttgaagtatccggatttcat 11755993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 25429971 - 25429872
Alignment:
Q  42 tatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    ||||||| |||||||| |||| ||||  |||||||||| ||||||||||||||||||| || ||||| ||||||||||| ||||||| |||||| |||||    
T  25429971 tatcatataagtatccattaatatattttttaaaaattaaaataattaattctgatacttcatgggtacgtatccgcgagtatccgtggagtattggtat 25429872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 24888940 - 24889041
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    ||||||||| ||||||||  ||| ||||  |||||||||| ||||||||||||||||||| || ||||| ||||||||||| ||||||| || ||| |||    
T  24888940 agtatcatataagtatccaataatatattttttaaaaattaaaataattaattctgatacttcatgggtacgtatccgcgagtatccgtggaatattggt 24889039  T
Q  140 at 141  Q
    ||    
T  24889040 at 24889041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 32855963 - 32855893
Alignment:
Q  47 tacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccg 117  Q
    ||||||||||| |||||||||  ||| |||||||||||||||||||||||||  |||||||||| ||||||    
T  32855963 tacaagtatccattaaaatatttttttaaaatttaaataattaattctgataattcgtgggtgcatatccg 32855893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 9409873 - 9409782
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    ||||||||| ||| ||||   ||||||||| |||||||||||| |||||| |||||| | |||||||| || ||||||| ||||||||||||    
T  9409873 aagtatccgataacatatttattaaaaattaaaataattaattatgatacttcgtggatacgtatccgtgagtatccgtggagtatcggtat 9409782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 23877574 - 23877642
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaat-ttaaataattaattctgatacatcgtgggtgcgtatccg 117  Q
    ||||||||||||||||||  ||| ||||| ||||||||||||||  ||||| ||||| |||||||||||    
T  23877574 aagtatccgttaaaatatttttttaaaatattaaataattaatttcgatacttcgtgcgtgcgtatccg 23877642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 24728771 - 24728855
Alignment:
Q  110 cgtatccgcgaatatccgtagagtatcggtattcaatatatatccaatacgagtatatatccgttttggagtatccggacttcat 194  Q
    ||||||||||| ||||||| |||||| |||||   |||  ||||| |||||||||  | ||||||||||||||||||| ||||||    
T  24728771 cgtatccgcgagtatccgtggagtattggtatctgatacgtatccgatacgagtacgtctccgttttggagtatccgggcttcat 24728855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 13003316 - 13003232
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatc 125  Q
    ||||||||| ||||||  | ||||||||  ||||||| || |||||||||||| |||||| | |||||| ||||||||||| ||||    
T  13003316 agtatcatataagtattagataaaatattttttaaaa-ttaaaataattaattatgatactttgtgggtacgtatccgcgagtatc 13003232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 18928732 - 18928792
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaa-atttaaataattaattctgatac 99  Q
    ||||||||| |||||||||  |||||||  ||||||| ||||||||||||||||| |||||    
T  18928732 agtatcatataagtatccgacaaaatattttttaaaaaatttaaataattaattccgatac 18928792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 70 - 192
Target Start/End: Complemental strand, 48152951 - 48152829
Alignment:
Q  70 tttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtattcaatatatatccaatacgagtatatat 169  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| ||||||| |||| |||||  ||||| ||||   ||  | |    
T  48152951 tttaaaaatttaaataattaattctgatacttcgtgggtgcgtgtccgcgagtatccgtggagtatcagtatccaatacgtatccgatacagatacgtct 48152852  T
Q  170 ccgttttggagtatccggacttc 192  Q
    |||||||||||||||||| ||||    
T  48152851 ccgttttggagtatccgggcttc 48152829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 43495924 - 43496020
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatc 136  Q
    |||||| || ||||||||||||||||||  |||  ||||||||||||||||||| ||||| |||| ||||||||||||||| |||||||||||||||    
T  43495924 agtatcgtataagtatccgttaaaatattttttttaaatttaaataattaattcggatacttcgtaggtgcgtatccgcgagtatccgtagagtatc 43496020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 47843938 - 47844039
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    ||||||||| ||||||||| ||||||||  || ||||||  ||||||||||||  ||||| |||||||| ||||||||||| ||||||| ||||||||||    
T  47843938 agtatcatataagtatccgataaaatatttttaaaaaatcaaaataattaattgagatacttcgtgggtacgtatccgcgagtatccgtggagtatcggt 47844037  T
Q  140 at 141  Q
    ||    
T  47844038 at 47844039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 45492109 - 45492008
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    ||||||||| ||||||||| ||| ||||| |||  ||||| ||||||||||||| ||||| || || ||  |||||||||||||||||| |||||| |||    
T  45492109 agtatcatataagtatccgataatatatattttttaaattaaaataattaattccgatacttcatgagtatgtatccgcgaatatccgtggagtattggt 45492010  T
Q  140 at 141  Q
    ||    
T  45492009 at 45492008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 45648395 - 45648488
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagt 133  Q
    ||||||| | ||||| ||| ||||||||   ||||||||| ||||||||||||| ||||| |||||||| ||||||||||| ||||||| ||||    
T  45648395 agtatcacataagtacccgataaaatatttattaaaaattaaaataattaattccgatacttcgtgggtacgtatccgcgagtatccgtggagt 45648488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 3751667 - 3751764
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcg 137  Q
    |||| |||| ||||||| | |||||||   ||||| |||| |||||||||| || ||||| |||||||| ||||||| ||||||||||| ||||||||    
T  3751667 agtaacatataagtatctgataaaataatttttaacaattgaaataattaactccgatacgtcgtgggtacgtatccacgaatatccgtggagtatcg 3751764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 5474782 - 5474829
Alignment:
Q  52 gtatccgttaaaatatactttaaaaatttaaataattaattctgatac 99  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||||    
T  5474782 gtatccgttaaaatattttttaaaaatttaaacaattaattctgatac 5474829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 40836329 - 40836268
Alignment:
Q  51 agtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgta 113  Q
    |||||| ||||||||||  ||||||| |||||||||||||||| ||||| |||||||||||||    
T  40836329 agtatctgttaaaatattttttaaaa-tttaaataattaattccgatacttcgtgggtgcgta 40836268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 34471713 - 34471644
Alignment:
Q  39 aagtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggt 108  Q
    ||||||| || ||||||| | ||||||||  ||| |||||| ||||||||||||||||||| ||||||||    
T  34471713 aagtatcctataagtatcagataaaatatttttttaaaattaaaataattaattctgatacttcgtgggt 34471644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 42040639 - 42040775
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtattcaatata 149  Q
    ||||||||| ||||||||   ||||||||| ||||||  |||| |||||| |||||  | ||||||| | | ||||||| ||||||||||||   |||      
T  42040639 aagtatccgataaaatatttattaaaaattaaaataaccaattatgatacttcgtgaatacgtatccacaagtatccgtggagtatcggtatctgatacg 42040738  T
Q  150 tatccaatacgagtatatatccgttttggagtatccg 186  Q
    |||||  ||||||||  | ||||||||||||||||||    
T  42040739 tatccggtacgagtacgtctccgttttggagtatccg 42040775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 45804852 - 45804784
Alignment:
Q  73 aaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    ||||||| ||||||||||||| ||||| |||||  | ||||||| |||||||||||  |||||||||||    
T  45804852 aaaaattaaaataattaattccgatacttcgtgaatacgtatcctcgaatatccgtgaagtatcggtat 45804784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 2185909 - 2185968
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatac 99  Q
    ||||||||| ||||||||| ||| ||||  |||||||||| || ||||||||||||||||    
T  2185909 agtatcatataagtatccgataatatattttttaaaaattaaattaattaattctgatac 2185968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 24699794 - 24699693
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    |||||| || ||||||||| |||||||||  ||  ||||| ||||||||||||| |||||  ||||| | |||||||| || ||||||  ||||||| ||    
T  24699794 agtatcttataagtatccgataaaatatatattttaaattaaaataattaattccgatactccgtggatacgtatccgagagtatccgcggagtatcagt 24699695  T
Q  140 at 141  Q
    ||    
T  24699694 at 24699693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 48138450 - 48138353
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcg 137  Q
    |||||| || ||||||||| |||||||||  ||  ||||| ||||||||||||| ||||  |||| ||| |||||||| || ||||||| || |||||    
T  48138450 agtatcttataagtatccgataaaatatatattttaaattaaaataattaattccgatatttcgtaggtacgtatccgagagtatccgtggattatcg 48138353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 9229526 - 9229670
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtattcaatata 149  Q
    ||||||||  |||||||||  ||  ||||| |||||||||||||||||||  ||||||| |||||||| || |||| |  ||||||||  || |||||      
T  9229526 aagtatccaataaaatatatattttaaattaaaataattaattctgatactccgtgggtacgtatccgagagtatctgcggagtatcgaaatccaatacg 9229625  T
Q  150 tatccaatacgagtatatatccgttttggagtatccggacttcat 194  Q
    |||||| |||| |||  | ||| |||||| |||||| | ||||||    
T  9229626 tatccagtacgggtacgtctccattttggggtatccaggcttcat 9229670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 5e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 40 - 184
Target Start/End: Original strand, 2988299 - 2988443
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    |||||| || ||||||||||||||||||  |||||||||||||||||||||||||||||| | ||| ||||||||||| || |||| || ||||||| ||    
T  2988299 agtatcgtataagtatccgttaaaatattttttaaaaatttaaataattaattctgatactttgtgtgtgcgtatccgtgactatctgtggagtatcagt 2988398  T
Q  140 attcaatatatatccaatacgagtatatatccgttttggagtatc 184  Q
    ||   |||  |||| ||||||||||  | || |||||||||||||    
T  2988399 atctgatacgtatctaatacgagtacgtctctgttttggagtatc 2988443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 40 - 194
Target Start/End: Original strand, 2032528 - 2032682
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    ||||||| | || |||||| ||||||||   ||||||||| ||||||||||||| ||||| |||||| | ||||||||||| ||||||| ||||||||||    
T  2032528 agtatcacataaatatccgataaaatatttattaaaaattaaaataattaattccgatacttcgtggatacgtatccgcgagtatccgtggagtatcggt 2032627  T
Q  140 attcaatatatatccaatacgagtatatatccgttttggagtatccggacttcat 194  Q
    || | |||  ||| |  |||||||| || ||||||||| ||||||||| ||||||    
T  2032628 atccgatacgtattcggtacgagtacatctccgttttgtagtatccgggcttcat 2032682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 10229361 - 10229295
Alignment:
Q  75 aaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  10229361 aaatttaaataattaattctgatacttcgtgggtgcgtatccgcgaatatacgtggagtatcggtat 10229295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 688261 - 688352
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    ||||||| | ||||||||   ||||||||| |||||| |||||||||||| |||||| | ||||||||||| ||||||| ||||||||||||    
T  688261 aagtatctgataaaatatttattaaaaattaaaataaataattctgatacttcgtggatacgtatccgcgagtatccgtggagtatcggtat 688352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 12283899 - 12283966
Alignment:
Q  74 aaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    |||||| |||||||||||| |||||| |||||||| | ||||||| ||||||||| ||||||||||||    
T  12283899 aaaattaaaataattaattttgatacttcgtgggtacatatccgcaaatatccgtggagtatcggtat 12283966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 17533561 - 17533663
Alignment:
Q  39 aagtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcgg 138  Q
    ||||||| || ||||||||| |||||||||  ||  ||||| ||||||||||||| ||||| || ||| | |||||| | || |||||| ||||||||||    
T  17533561 aagtatcttataagtatccgataaaatatatattttaaattaaaataattaattccgatacttcatggatacgtatctgagagtatccgcagagtatcgg 17533660  T
Q  139 tat 141  Q
    |||    
T  17533661 tat 17533663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 12312228 - 12312313
Alignment:
Q  74 aaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtattcaatatatatccaatac 159  Q
    |||||| ||||||||||||| ||||| || | ||| ||||||||| | ||||||||||||||| |||| | |||  ||||||||||    
T  12312228 aaaattaaaataattaattccgatacttcataggtacgtatccgcaagtatccgtagagtatcagtatccgatacgtatccaatac 12312313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 11767853 - 11767961
Alignment:
Q  76 aatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtattcaatatatatccaatacgagtatatatccgttt 175  Q
    ||||||||||||||||| |||||| |||||||||||||||||||| |||||||| ||||||||||| | |||  ||||||||||| |||  | |||||||    
T  11767853 aatttaaataattaattttgatacttcgtgggtgcgtatccgcgagtatccgtaaagtatcggtatccgatacgtatccaatacgggtacgtctccgttt 11767952  T
Q  176 tggagtatc 184  Q
    | |||||||    
T  11767953 tagagtatc 11767961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 4966635 - 4966545
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatacttta--aaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgt 128  Q
    ||||||||| ||||||||| |||| |||  |||   ||||||||||||||||||||| |||| |||||||| |||||||||||||||||||    
T  4966635 agtatcatataagtatccgataaattatttttttttaaaatttaaataattaattctcatacttcgtgggtacgtatccgcgaatatccgt 4966545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 194
Target Start/End: Original strand, 31513789 - 31513942
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    ||||||| | ||||||||| ||||||||   ||||||||| ||||||||||||| ||||  |||||| |  |||||||||| |||||||| |||||||||    
T  31513789 agtatcacataagtatccgataaaatatttattaaaaattaaaataattaattccgatagttcgtggatatgtatccgcgagtatccgtaaagtatcggt 31513888  T
Q  140 attcaatatatatccaatacgagtatatatccgttttggagtatccggacttcat 194  Q
    | || || | ||| |  |||  ||| || |||||||||||||||||| |||||||    
T  31513889 a-tccatgtgtatacggtacatgtacatttccgttttggagtatccgaacttcat 31513942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 40693869 - 40693780
Alignment:
Q  52 gtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    ||||||| ||||||||   ||||||||| |||||||||||||  |||| |||||| | ||||||||||| ||||||| ||||||||||||    
T  40693869 gtatccgataaaatatttattaaaaattaaaataattaattccaatacttcgtggatacgtatccgcgagtatccgtggagtatcggtat 40693780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 4973253 - 4973333
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcga 120  Q
    ||||||||| ||||||| | ||||||||  ||| ||||||||||||||||||||| |||  |||||||| |||||||||||    
T  4973253 agtatcatataagtatctgataaaatatttttttaaaatttaaataattaattctcatatttcgtgggtacgtatccgcga 4973333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 194
Target Start/End: Complemental strand, 50726615 - 50726460
Alignment:
Q  39 aagtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcgg 138  Q
    |||||||| | |||||||||  |||||||   ||||||||| ||||||||||||| ||||| |||||| | ||||| | ||||||||||| || ||||||    
T  50726615 aagtatcacataagtatccgaaaaaatatttattaaaaattaaaataattaattccgatacttcgtggatacgtattcacgaatatccgtggaatatcgg 50726516  T
Q  139 tattcaatatatatccaatacgagtatatatccgttttggagtatccggacttcat 194  Q
    |||   |||  ||||| ||||| |||  | || || ||| ||||||||||||||||    
T  50726515 tatatgatacgtatccgatacgggtacgtctctgtcttgaagtatccggacttcat 50726460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 13558450 - 13558358
Alignment:
Q  21 ccttgtgtatctgccgcaaagtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccg 117  Q
    |||||||||||||| |   |||||| || |||||||||||||| |||  || ||||||||||||||||||||| ||||| |||||| ||||||||||    
T  13558450 ccttgtgtatctgcgg---agtatcgtataagtatccgttaaa-tatttttaaaaaatttaaataattaattccgatacttcgtggatgcgtatccg 13558358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 14286970 - 14286869
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    ||||||||| ||||||||| ||| ||||| |||  ||||| ||||||||||||| ||||| || || ||  |||||||||| ||||||| |||||| |||    
T  14286970 agtatcatataagtatccgataatatatattttttaaattaaaataattaattccgatacttcatgagtatgtatccgcgagtatccgtggagtattggt 14286871  T
Q  140 at 141  Q
    ||    
T  14286870 at 14286869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 40032598 - 40032493
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgc----gtatccgcgaatatccgtagagtat 135  Q
    ||||||||| ||||||| | ||||||||  |||||||||| ||||||| ||||| ||||| |||||||| |    ||||| |||| ||||||| ||||||    
T  40032598 agtatcatataagtatctgataaaatattttttaaaaattaaaataataaattccgatacttcgtgggtacatatgtatctgcgagtatccgtggagtat 40032499  T
Q  136 cggtat 141  Q
    ||||||    
T  40032498 cggtat 40032493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 17116189 - 17116098
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    ||||||||| ||||||||    |||||||| ||||||||||||| ||||| |||||| | |||| |||||| |||||||  |||||||||||    
T  17116189 aagtatccgataaaatatttaataaaaattaaaataattaattccgatacttcgtggatacgtacccgcgagtatccgtgaagtatcggtat 17116098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 30902549 - 30902620
Alignment:
Q  54 atccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatc 125  Q
    ||||||||||||||  ||| |||| | ||||||||||||||||||| | |||||| ||||||||||| ||||    
T  30902549 atccgttaaaatatttttttaaaactaaaataattaattctgatactttgtgggtacgtatccgcgagtatc 30902620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 38683113 - 38683235
Alignment:
Q  60 taaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtattcaatatatatccaatac 159  Q
    ||||||||  |||||||||| ||||||||||||  ||||| || ||| | |||||  |||| |||||||||||||||||| | | ||| |||| | ||||    
T  38683113 taaaatattttttaaaaattaaaataattaatttcgatacttcatgg-tacgtatttgcgagtatccgtagagtatcggtgtccgatacatattcgatac 38683211  T
Q  160 gagtatatatccgttttggagtat 183  Q
     ||||  | |||||||||||||||    
T  38683212 aagtacgtctccgttttggagtat 38683235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 51899104 - 51899192
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatac--tttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatcc 126  Q
    ||||||||||||| ||||| |||||||||   |||  ||||| |||||| |||||||||||| ||||||||  |||||| ||| |||||    
T  51899104 agtatcatacaagcatccgataaaatatatattttttaaattaaaataagtaattctgatacttcgtgggtatgtatccacgagtatcc 51899192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 1052321 - 1052214
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    |||||| || || |||||||||| ||||  |||  |||||||||||||||| || ||||| ||||  |||||||||||||||||||||||||||||||||    
T  1052321 agtatcgtataaatatccgttaatatattttttttaaatttaaataattaactccgatacttcgttagtgcgtatccgcgaatatccgtagagtatcggt 1052222  T
Q  140 attcaata 147  Q
    || |||||    
T  1052221 atccaata 1052214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 53586362 - 53586259
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    |||||| || || |||||||||||||||  || |||||||||||||||||||| |||||| | |||||||| |||||||||  |||||| | ||||||||    
T  53586362 agtatcgtataattatccgttaaaatatttttaaaaaatttaaataattaattatgatacttggtgggtgcctatccgcgagcatccgtggcgtatcggt 53586263  T
Q  140 attc 143  Q
    ||||    
T  53586262 attc 53586259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 4214102 - 4214204
Alignment:
Q  39 aagtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcgg 138  Q
    |||||||||| ||||||| | ||||||||  |||||||||| ||||||||||||||| ||| |||||||| |||||| |||| || ||||  ||||||||    
T  4214102 aagtatcatataagtatcagataaaatattttttaaaaattaaaataattaattctggtacttcgtgggtacgtatctgcgagtacccgtgaagtatcgg 4214201  T
Q  139 tat 141  Q
    |||    
T  4214202 tat 4214204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 47923120 - 47923219
Alignment:
Q  42 tatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    ||||||| ||||||||| ||||||||  ||| |||||| |||||||||||| ||||||  ||||||| |||||| |||| |||||||  ||||| |||||    
T  47923120 tatcatataagtatccgataaaatatttttttaaaattaaaataattaattatgatactccgtgggtacgtatctgcgagtatccgtgaagtattggtat 47923219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 2295295 - 2295225
Alignment:
Q  71 ttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    ||||||||| ||||||||||||| ||||| |||||| | ||||||||||| ||||| | ||||||||||||    
T  2295295 ttaaaaattaaaataattaattccgatacttcgtggatacgtatccgcgagtatccttggagtatcggtat 2295225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 6008145 - 6008048
Alignment:
Q  39 aagtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatc 136  Q
    ||||||| || |||||||||||||| |||  | | ||||||||||||||||||  | |||| |||| ||||||||||||| | |||| ||||||||||    
T  6008145 aagtatcgtataagtatccgttaaattattttcttaaaatttaaataattaatgttaatacttcgtcggtgcgtatccgcaagtatctgtagagtatc 6008048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 47724773 - 47724842
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcg 119  Q
    ||||||||| |||||||||  ||  ||||| ||||||||||||||||||| |||||||| ||||||||||    
T  47724773 aagtatccgataaaatatatattttaaattaaaataattaattctgatacttcgtgggtacgtatccgcg 47724842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 183
Target Start/End: Original strand, 2243121 - 2243155
Alignment:
Q  149 atatccaatacgagtatatatccgttttggagtat 183  Q
    |||||||||||||||||||||||||||||||||||    
T  2243121 atatccaatacgagtatatatccgttttggagtat 2243155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 40217480 - 40217435
Alignment:
Q  70 tttaaaaatttaaataattaattctgatacatcgtgggtgcgtatc 115  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||    
T  40217480 tttaaaaatttaaataattaattctgatacttcatgggtacgtatc 40217435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 2243034 - 2243114
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcga 120  Q
    ||||||| | |||||| || ||||||||   ||||||||| ||||||||||||||||||| || ||||| ||||| |||||    
T  2243034 agtatcacataagtattcgataaaatatttattaaaaattaaaataattaattctgatacttcatgggtacgtattcgcga 2243114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 6255277 - 6255205
Alignment:
Q  122 tatccgtagagtatcggtattcaatatatatccaatacgagtatatatccgttttggagtatccggacttcat 194  Q
    ||||||| |||||||||||| |||| ||||||| ||||| |||  | ||| |||| |||||||||||||||||    
T  6255277 tatccgtggagtatcggtatccaatgtatatccgatacgggtacgtctccattttagagtatccggacttcat 6255205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 27675360 - 27675304
Alignment:
Q  70 tttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatcc 126  Q
    |||||||||| ||||||||| ||| ||||| || ||||| ||||||||||| |||||    
T  27675360 tttaaaaattaaaataattatttccgatacttcatgggtacgtatccgcgagtatcc 27675304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 34075340 - 34075484
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtattcaatata 149  Q
    ||||||||| |||||||||  ||  ||||| ||||||||||||| |||||   |||||| |||||||| || |||||   |||||||||||| | ||| |    
T  34075340 aagtatccgataaaatatatattttaaattaaaataattaattccgatactctgtgggtacgtatccgagagtatccacggagtatcggtatccgataca 34075439  T
Q  150 tatccaatacgagtatatatccgttttggagtatccggacttcat 194  Q
    ||||  ||| | |||  | ||| ||||||||||| ||| ||||||    
T  34075440 tatcggatatgggtacgtctccattttggagtattcgggcttcat 34075484  T

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Target: scaffold0565 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 7854 - 7753
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    ||||||| | |||||| || ||||||||   ||||||||| ||||||||||||| ||||| |||||| | ||||||||||| ||||||||||||||||||    
T  7854 agtatcacataagtattcgataaaatatttattaaaaattaaaataattaattccgatacttcgtggatacgtatccgcgagtatccgtagagtatcggt 7755  T
Q  140 at 141  Q
    ||    
T  7754 at 7753  T

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Target: scaffold0495 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 6102 - 6013
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    |||||||| |||||||||  ||| ||| ||  |||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  6102 aagtatccattaaaatatttttttaaattt--aataattaattctgatacttcgtgggtgcgtatccgcgaatatacgtggagtatcggtat 6013  T

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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 36504784 - 36504682
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    |||||| || |||||||||||| |||||  ||||||||||||||||||||||| |||||| |||||||||  |||| |||| |||| || |||||||| |    
T  36504784 agtatcgtataagtatccgttataatattttttaaaaatttaaataattaattttgatacttcgtgggtgaatatctgcgagtatctgttgagtatcgat 36504685  T
Q  140 att 142  Q
    |||    
T  36504684 att 36504682  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 7629366 - 7629453
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccg 127  Q
    ||||||| ||||||||||| ||||||||   ||||||||| ||||||||||||||||||| |||||| | |||||| |||| ||||||    
T  7629366 agtatcacacaagtatccgataaaatatttattaaaaattaaaataattaattctgatacttcgtggatacgtatctgcgagtatccg 7629453  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 52695765 - 52695836
Alignment:
Q  70 tttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    |||||||||| ||||||||||||||||||| |||||||| ||| |||  || ||||||| ||||||||||||    
T  52695765 tttaaaaattaaaataattaattctgatacttcgtgggtacgtttccaagagtatccgtggagtatcggtat 52695836  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 39615240 - 39615309
Alignment:
Q  72 taaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    |||||||| |||||||||||||  |||| | ||||||||||||| ||||||||||||| | |||||||||    
T  39615240 taaaaattaaaataattaattcaaatactttgtgggtgcgtatctgcgaatatccgtaaaatatcggtat 39615309  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 43471728 - 43471627
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    |||||| || ||||||||| |||||||||  || |||||| |||||||||||||||||||  ||||||| |||||| | || |||||   ||||||||||    
T  43471728 agtatcttataagtatccgataaaatatatatttaaaattaaaataattaattctgatactccgtgggtacgtatctgagagtatccactgagtatcggt 43471629  T
Q  140 at 141  Q
    ||    
T  43471628 at 43471627  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 46979524 - 46979625
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    ||||||| | ||||||||| ||||||||   ||||||||| ||||||||||||||||||| | |||||| | |||  |||| || |||| ||||||||||    
T  46979524 agtatcaaataagtatccgataaaatatttattaaaaattaaaataattaattctgatactttgtgggtacatatttgcgagtacccgtggagtatcggt 46979623  T
Q  140 at 141  Q
    ||    
T  46979624 at 46979625  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 45472529 - 45472410
Alignment:
Q  74 aaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtattcaatatatatccaatacgagtatatatccgt 173  Q
    |||||||||||||||||||   |||| |||||| |||||||| |||| ||||||| |||||||||||| | |||  ||||  |||||||||  | |||||    
T  45472529 aaaatttaaataattaatttcaatacttcgtggatgcgtatc-gcgagtatccgtggagtatcggtatccgatacgtatcggatacgagtacgtctccgt 45472431  T
Q  174 tttggagtatccggacttcat 194  Q
    |||| ||||||| || |||||    
T  45472430 tttgaagtatccagatttcat 45472410  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 52204326 - 52204398
Alignment:
Q  71 ttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtattc 143  Q
    |||||| || |||||||||||| |||||| |||||||| ||||||||||| ||||| |  |||||||||||||    
T  52204326 ttaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcgagtatccatgaagtatcggtattc 52204398  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 27164208 - 27164287
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgta 129  Q
    ||||||| | ||||||||| ||||||||| |||||||||||||| ||||| | ||  || ||||||| ||||||||||||    
T  27164208 aagtatcagataaaatatattttaaaaatgtaaataattaattccgatactttgtaagtacgtatccacgaatatccgta 27164287  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 36172119 - 36172210
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    ||||||||| |||||||||  ||  ||||| |||||||||||||||||||  ||||||| |||||||| || |||||   ||||||||||||    
T  36172119 aagtatccgataaaatatatattttaaattaaaataattaattctgatactccgtgggtacgtatccgagagtatccacggagtatcggtat 36172210  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 24121014 - 24120901
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    |||||| || ||| ||||| |||||||||  ||  ||||| ||||||||||||  |||||   |||||| ||||||||||| ||||||| ||||||| ||    
T  24121014 agtatcttataagcatccgataaaatatatattttaaattaaaataattaatttcgatactctgtgggtacgtatccgcgagtatccgtggagtatcagt 24120915  T
Q  140 attcaatatatatc 153  Q
    || ||||| |||||    
T  24120914 atccaatacatatc 24120901  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 24611633 - 24611740
Alignment:
Q  40 agtatcatacaagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggt 139  Q
    |||||| || ||||||||| ||||||||   ||  ||||| |||||||||||||||||||  ||||  | ||||||||||| |||  || ||||||||||    
T  24611633 agtatcttataagtatccgataaaatatgtattttaaattaaaataattaattctgatactccgtgaatacgtatccgcgagtatatgtggagtatcggt 24611732  T
Q  140 attcaata 147  Q
    || |||||    
T  24611733 atccaata 24611740  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 12176667 - 12176753
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatc 136  Q
    ||||||||| |||||||||  ||  ||||| ||||||||||||| |||||  ||||||| |||||||| || ||||||  |||||||    
T  12176667 aagtatccgataaaatatatattttaaattaaaataattaattccgatactccgtgggtacgtatccgagagtatccgcggagtatc 12176753  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 38489895 - 38489953
Alignment:
Q  83 ataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtat 141  Q
    ||||||||||||||||| ||||||||||||||| |||| ||| ||| ||  ||||||||    
T  38489895 ataattaattctgatacttcgtgggtgcgtatctgcgagtattcgtggaacatcggtat 38489953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 40614774 - 40614725
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatac 99  Q
    ||||||||| ||||||||  ||||||| || |||||||||||||||||||    
T  40614774 aagtatccgataaaatattttttaaaagttaaaataattaattctgatac 40614725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 17064033 - 17064073
Alignment:
Q  84 taattaattctgatacatcgtgggtgcgtatccgcgaatat 124  Q
    |||||||||| ||||| |||||| |||||||||||||||||    
T  17064033 taattaattccgatacttcgtggatgcgtatccgcgaatat 17064073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 35433445 - 35433357
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcgg 138  Q
    ||||||||| |||||||||  ||  ||||| |||||||||||||| |||   ||||||| |||||| |  ||||||||| |||||||||    
T  35433445 aagtatccgataaaatatatattttaaattaaaataattaattctaatattacgtgggtacgtatctgaaaatatccgtggagtatcgg 35433357  T

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Target: scaffold0051 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 53751 - 53607
Alignment:
Q  50 aagtatccgttaaaatatactttaaaaatttaaataattaattctgatacatcgtgggtgcgtatccgcgaatatccgtagagtatcggtattcaatata 149  Q
    ||||||||| |||||||||  ||  ||||| ||  ||||||||||||||| | |||||| |||||||| || ||||||  ||||||| | |||| |||      
T  53751 aagtatccgataaaatatatattttaaattaaaggaattaattctgatactttgtgggtacgtatccgagagtatccgcggagtatcagaattcgatacg 53652  T
Q  150 tatccaatacgagtatatatccgttttggagtatccggacttcat 194  Q
    |||||| ||||||||  | |||  ||||| |||||||| ||||||    
T  53651 tatccagtacgagtacgtctccactttggggtatccgggcttcat 53607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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