View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18110_low_2 (Length: 453)

Name: NF18110_low_2
Description: NF18110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18110_low_2
NF18110_low_2
[»] chr1 (3 HSPs)
chr1 (256-415)||(28281761-28281920)
chr1 (23-190)||(28283078-28283240)
chr1 (23-85)||(32567084-32567146)
[»] chr7 (4 HSPs)
chr7 (32-101)||(45852498-45852567)
chr7 (23-83)||(43341036-43341096)
chr7 (61-99)||(31305192-31305230)
chr7 (26-91)||(27305505-27305570)
[»] chr6 (3 HSPs)
chr6 (26-99)||(12127254-12127327)
chr6 (22-101)||(33427638-33427717)
chr6 (61-97)||(20836604-20836640)
[»] chr4 (4 HSPs)
chr4 (30-91)||(34214462-34214522)
chr4 (23-99)||(23780217-23780293)
chr4 (23-83)||(327034-327094)
chr4 (23-99)||(44833917-44833993)
[»] chr5 (1 HSPs)
chr5 (20-99)||(34071389-34071468)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 256 - 415
Target Start/End: Complemental strand, 28281920 - 28281761
Alignment:
Q  256 caattgtttagttaaacaaaaagttgatcatttggagtggaaggatacnnnnnnnngttacatagtcgttgcctgcagatgaagaacacctcaccaagta 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| |||||||||||| ||||||||||||||||||||||    
T  28281920 caattgtttagttaaacaaaaagttgatcatttggagtggaaggatacaaaaaaaagttacataatcgttgcctgcatatgaagaacacctcaccaagta 28281821  T
Q  356 taaattttgttgtccatgcctagtgttgatacatttatgcttagcgaaccgtctttgctc 415  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  28281820 taaattttgttgtccatgcctagtgttgatacttttatacttagcgaaccgtctttgctc 28281761  T

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Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 28283240 - 28283078
Alignment:
Q  23 ttcagttattttgaatttaataaacaatcaagtttaactcggttcagttttcatcccgaaccaaaccatatccaccctaattatagtcttttttcagttg 122  Q
    ||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28283240 ttcagttattttgaatttagtaaacaatccagtttaactcgattcagttttcatcccgaatcaaaccatatccaccctaattatagtcttttttcagttg 28283141  T
Q  123 attgaataacaaatttgtacgtgttttcactttatgttgagttttattaatcttaagttaattaggtg 190  Q
    || ||||||||||||||||||||||||||||     | ||||||| ||||||||||||||||||||||    
T  28283140 atagaataacaaatttgtacgtgttttcact-----tagagttttgttaatcttaagttaattaggtg 28283078  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 32567146 - 32567084
Alignment:
Q  23 ttcagttattttgaatttaataaacaatcaagtttaactcggttcagttttcatcccgaacca 85  Q
    |||||||||||| |||| ||||||||||  ||||||  ||||||||||||||||||| |||||    
T  32567146 ttcagttattttaaattcaataaacaattcagtttagttcggttcagttttcatcccaaacca 32567084  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 45852498 - 45852567
Alignment:
Q  32 tttgaatttaataaacaatcaagtttaactcggttcagttttcatcccgaaccaaaccatatccacccta 101  Q
    ||||||||||  |||||||  ||||||| ||| |||| ||||||||||||||||||||||| ||||||||    
T  45852498 tttgaatttagcaaacaatttagtttaattcgattcaattttcatcccgaaccaaaccatacccacccta 45852567  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 43341096 - 43341036
Alignment:
Q  23 ttcagttattttgaatttaataaacaatcaagtttaactcggttcagttttcatcccgaac 83  Q
    |||||||||||| ||||||  |||||||  ||||||| | |||||||||||||||||||||    
T  43341096 ttcagttattttaaatttatcaaacaattcagtttaatttggttcagttttcatcccgaac 43341036  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 31305230 - 31305192
Alignment:
Q  61 tcggttcagttttcatcccgaaccaaaccatatccaccc 99  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  31305230 tcggttcatttttcatcccgaaccaaaccatacccaccc 31305192  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 27305570 - 27305505
Alignment:
Q  26 agttattttgaatttaataaacaatcaagtttaactcggttcagttttcatcccgaaccaaaccat 91  Q
    ||||||||| ||||||  |||||||  ||||| | |||||||||||||||||| ||||| ||||||    
T  27305570 agttattttaaatttagcaaacaatgcagtttgattcggttcagttttcatcctgaaccgaaccat 27305505  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 12127327 - 12127254
Alignment:
Q  26 agttattttgaatttaataaacaatcaagtttaactcggttcagttttcatcccgaaccaaaccatatccaccc 99  Q
    |||||||||||||||   ||||| |  ||||||  |||||| ||||||||||||||||||||||||| ||||||    
T  12127327 agttattttgaatttcgcaaacagttcagtttagttcggttaagttttcatcccgaaccaaaccatacccaccc 12127254  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 33427717 - 33427638
Alignment:
Q  22 attcagttattttgaatttaataaacaatcaagtttaactcggttcagttttcatcccgaaccaaaccatatccacccta 101  Q
    ||||||||||||| ||||||| ||| |||  ||||||  |||||||||||||||| ||||||  ||| || |||||||||    
T  33427717 attcagttattttaaatttaacaaataattcagtttagttcggttcagttttcattccgaactgaacaatgtccacccta 33427638  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 20836640 - 20836604
Alignment:
Q  61 tcggttcagttttcatcccgaaccaaaccatatccac 97  Q
    |||||||||||||||||||||||  ||||||||||||    
T  20836640 tcggttcagttttcatcccgaactgaaccatatccac 20836604  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 34214522 - 34214462
Alignment:
Q  30 attttgaatttaataaacaatcaagtttaactcggttcagttttcatcccgaaccaaaccat 91  Q
    |||||||||| || |||||||  ||||||  |||||||||||||||||||||||||||||||    
T  34214522 attttgaatt-aacaaacaattcagtttagttcggttcagttttcatcccgaaccaaaccat 34214462  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 23780293 - 23780217
Alignment:
Q  23 ttcagttattttgaatttaataaacaatcaagtttaactcggttcagttttcatcccgaaccaaaccatatccaccc 99  Q
    |||| |||||||  |||||  ||||||| ||||| || |||||||||||||||||||||||  |||||| |||||||    
T  23780293 ttcaattattttagatttagcaaacaattaagttcaattcggttcagttttcatcccgaactgaaccatgtccaccc 23780217  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 327094 - 327034
Alignment:
Q  23 ttcagttattttgaatttaataaacaatcaagtttaactcggttcagttttcatcccgaac 83  Q
    |||||||||||| ||||||  |||||||  ||||||  |||||||| ||||||||||||||    
T  327094 ttcagttattttaaatttagcaaacaattcagtttagttcggttcatttttcatcccgaac 327034  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 44833993 - 44833917
Alignment:
Q  23 ttcagttattttgaatttaataaacaatcaagtttaactcggttcagttttcatcccgaaccaaaccatatccaccc 99  Q
    |||||||||||| ||||||  ||||| |  | ||| | |||||||| ||||||||||||||| ||||||| ||||||    
T  44833993 ttcagttattttaaatttagcaaacagttcaatttgattcggttcaattttcatcccgaaccgaaccatacccaccc 44833917  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 34071389 - 34071468
Alignment:
Q  20 cgattcagttattttgaatttaataaacaatcaagtttaactcggttcagttttcatcccgaaccaaaccatatccaccc 99  Q
    ||||||||||||||| ||||||  |||||||  ||||| | | |||| |||||||| |||||||| |||||| |||||||    
T  34071389 cgattcagttattttaaatttatcaaacaattcagtttgatttggtttagttttcaacccgaaccgaaccatgtccaccc 34071468  T

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