View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18110_low_3 (Length: 423)
Name: NF18110_low_3
Description: NF18110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18110_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 22 - 404
Target Start/End: Complemental strand, 29488874 - 29488492
Alignment:
| Q |
22 |
atggatgaaggattaactattattgttgtgttaaatattataatggtgattgattagatggaagaagttgtatatgatttgtttggttagtatatccatt |
121 |
Q |
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| T |
29488874 |
atggatgaaggattaactattattgttgtgttaaatattataatggtgattgattagatggaagaagttgtatatgatttgtttgtttagtatatccatt |
29488775 |
T |
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| Q |
122 |
agactttgtgaccataatgcatatatatagtgattattaatgtttatagttttaaaatatttgatgtggttttagaaaacaaagttaaagttgtaacata |
221 |
Q |
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| T |
29488774 |
agactttgtgaccataatgcatatatatagtgattattaatgattatagtttttaaatatttgatgtggttttagaaaacaaagttaaagttgtaacata |
29488675 |
T |
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| Q |
222 |
tggcatggtattggttgtaacttttggccaagtgtaagtcctcaatcgacaaaagtgattcaaatgttttatatttactttttgtaatttttatagttaa |
321 |
Q |
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| T |
29488674 |
tggcatggtattggttgtaacttttggccaagtgtaagtcctcaatcgacaaaagtgattcaagtgttttatatttactttttgtaatttttgtagttaa |
29488575 |
T |
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| Q |
322 |
agttgaggtttgattgtaaatgaagttctcattggaataatcattcctataaatttgacaaaactagagtttatccaaatatg |
404 |
Q |
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| T |
29488574 |
agttgaggtttgattgtaaatgaagttgtcattggaataatcattgctataaatttgacaaaactagagtttatccaaatatg |
29488492 |
T |
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