View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18110_low_4 (Length: 383)
Name: NF18110_low_4
Description: NF18110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18110_low_4 |
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| [»] scaffold0743 (1 HSPs) |
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Alignment Details
Target: scaffold0743 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0743
Description:
Target: scaffold0743; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 288 - 365
Target Start/End: Original strand, 3744 - 3821
Alignment:
| Q |
288 |
ttggcctatataaagctaacatcaacacctcacaaggtatctctcttctaacccgagcctcccttctatttacatact |
365 |
Q |
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| T |
3744 |
ttggcctatataaagctaacagcaagacctcacaaggtatctctcttctaacccgagcctcccttctatttacatact |
3821 |
T |
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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 30380987 - 30381066
Alignment:
| Q |
11 |
cagagaaaaattagaataaaaatgaaacaaaatcggagcaataaaagaaggagatgattctaggaatcaaacgataacaa |
90 |
Q |
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| T |
30380987 |
cagagaaaaattagaacacaaatgaaacacaattggagcaatcaaagaagaagatgattcttggaatcaaatgataacaa |
30381066 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 10006533 - 10006482
Alignment:
| Q |
287 |
cttggcctatataaagctaacatcaacacctcacaaggtatctctcttctaa |
338 |
Q |
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| T |
10006533 |
cttggcctatataaggcgaacaccaagacctcacaaggtatctcttttctaa |
10006482 |
T |
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