View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18110_low_6 (Length: 337)
Name: NF18110_low_6
Description: NF18110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18110_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 9296940 - 9296692
Alignment:
| Q |
1 |
attgtgttctaacatatggacttttggatcatgagattacctactgatgtcaaagttaacgatggctagcacaatgaatcttttccacagccccacaatg |
100 |
Q |
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| T |
9296940 |
attgtgttctaacatatggacttttggatcatgagattacctactgatgtcaaagttaacgatggctagcacaatgaatcttttccacagccccacaatg |
9296841 |
T |
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| Q |
101 |
aatctatttctttatttcatcactcaatcaaatttataatttgtatttctgttaattctgtaacttattttatactcttattcttcatgccggattatct |
200 |
Q |
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| T |
9296840 |
aatctatttctttatttcatcactcaatcaaatttataatttgtattt---------ctgtaactttttttatactcttattcttcatgccggattatct |
9296750 |
T |
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| Q |
201 |
atgatttgggaatttgatgcaggttctgtttatttaaatttatgttcatatccatttt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9296749 |
atgatttgggaatttgatgcaggttctgtttatttaaatttatgttcatatccatttt |
9296692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 111 - 327
Target Start/End: Complemental strand, 9286088 - 9285882
Alignment:
| Q |
111 |
tttatttcatcactcaatcaaatttataatt-tgtatttctgttaattctgtaacttattttatactcttattcttcatgccggattatctatgatttgg |
209 |
Q |
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| T |
9286088 |
tttatttcatcactcaatcaaatttataattctgt-tttctgttacttctgtaactt----tatattcttattcttcaagctggaatatctatgagttgg |
9285994 |
T |
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| Q |
210 |
gaatttgatgcaggttctgtttatttaaatttatgttcatatccattttcattcaaatctacagtctacagatgtgatttttctgtgctcagattcttct |
309 |
Q |
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| T |
9285993 |
gaattttatgcaggttctgttcatttaa----atgttcatatccatttttattcaaatct--cttatatacatgtgatttttctgtgctcagattcttct |
9285900 |
T |
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| Q |
310 |
ctttgctcacattctctg |
327 |
Q |
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| T |
9285899 |
ctttgctcacattctctg |
9285882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 9295861 - 9295788
Alignment:
| Q |
254 |
attttcattcaaatctacagtctacagatgtgatttttctgtgctcagattcttctctttgctcacattctctg |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9295861 |
attttcattcaaatctacagtctacagatgtgatttttctgtgctcagattcttctctttgctcacattctctg |
9295788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 168 - 325
Target Start/End: Complemental strand, 47262772 - 47262618
Alignment:
| Q |
168 |
ttttatactcttattcttcatgccggattatctatgatttgggaatttgatgcaggttctgtttatttaaatttatgttcatatccattttcattcaaat |
267 |
Q |
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|||||||||||||| ||||| | ||||||||||||||||| |||||| |||||||||||||| ||||| ||||||||| |||||||||||||||||||| |
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| T |
47262772 |
ttttatactcttat-cttcaagttggattatctatgatttgtgaattt-atgcaggttctgttcatttagatttatgtttatatccattttcattcaaat |
47262675 |
T |
|
| Q |
268 |
ctacagtctacagatgtgatttttctgtgctcagattcttctctttgctcacattctc |
325 |
Q |
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|||| |||| |||||||| ||||||||||||| || |||||||||| | |||||| |
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| T |
47262674 |
ctac-ctctatggatgtgatctttctgtgctcaggttactctctttgcttagattctc |
47262618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 35980170 - 35980252
Alignment:
| Q |
7 |
ttctaacatatggacttttggatcatgagat--tacctactgatgtcaaagttaacgatggctagcacaatgaatcttttcca |
87 |
Q |
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|||||||| ||| |||||||||| | ||||| ||||||||||| ||||||||||| ||||| ||||| ||||| ||||||| |
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| T |
35980170 |
ttctaacagatgaacttttggataaggagatattacctactgatatcaaagttaacaatggcatgcacagtgaattttttcca |
35980252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 37466098 - 37466034
Alignment:
| Q |
238 |
atttatgttcatatccattttcattcaaatctacagtctacagatgtgatttttctgtgctcagatt |
304 |
Q |
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|||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||| |
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| T |
37466098 |
atttatgttcatatccattt-cattcaaatctact-tctatgaatgtgatttttctgtggtcagatt |
37466034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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