View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18111_high_11 (Length: 360)
Name: NF18111_high_11
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18111_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 15 - 345
Target Start/End: Complemental strand, 827759 - 827429
Alignment:
| Q |
15 |
caaaggcactcttatatcacaagcattagtagcgtttgcaatcataaacatctaagtgattcctgtgtttttggtcatgtgatttttacctgatgcaatc |
114 |
Q |
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| T |
827759 |
caaaggcactcttatatcacaagcattagtagcgtttgcaatcataaacatctaagtgattcctgtgtttttggtcatgcgatttttacctggtgcaatc |
827660 |
T |
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| Q |
115 |
aattacaatgctctaaattctaatccatggctatttcacctgaagtattaaaatttttattatcatagtaaggtaaagcatttaactccttttttcaact |
214 |
Q |
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| T |
827659 |
aattacaatgctctaaattctaatccatggctatttcacctgaagtattaaaatttttattatcatagtaaggtaaagcatttaactccttttttcaact |
827560 |
T |
|
| Q |
215 |
gaaacaggttcatgcgtccagaaactgcacagggcatatttgttaatttcaaagacttgtactattacaatggaaacaagctaccctttgctgctgcaca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
827559 |
gaaacaggttcatgcgtccagaaactgcacagggcatatttgttaatttcaaagacttgtactattacaatggaaacaagctaccctttgctgctgcaca |
827460 |
T |
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| Q |
315 |
aattggacaggcatttagaaatgaggtttgt |
345 |
Q |
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| T |
827459 |
aattggacaggcatttagaaatgaggtttgt |
827429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 27 - 345
Target Start/End: Complemental strand, 834276 - 833961
Alignment:
| Q |
27 |
tatatcacaagcattagtagcgtttgcaatcataaacatctaagtgattcctgtgtttttggtcatgtgatttttacctgatgcaatcaattacaatgct |
126 |
Q |
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| T |
834276 |
tatatcacaatcatcagtagcctttgcaataataaacatgtaagtgattcctgtatttt-ggtcatgtgatttttacctggtgcattcacttacaatgct |
834178 |
T |
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| Q |
127 |
ctaaattctaatccatggctatttcacctgaagtattaaaatttttattatcatagtaa--ggtaaag----catttaactccttttttcaactgaaaca |
220 |
Q |
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| T |
834177 |
ctaa-------tccatgggtatttcacctgaagtattaaaaatttgattatcatggtaactggtaaggtaaacatttaattccttttt-caactggaaca |
834086 |
T |
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| Q |
221 |
ggttcatgcgtccagaaactgcacagggcatatttgttaatttcaaagacttgtactattacaatggaaacaagctaccctttgctgctgcacaaattgg |
320 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||||||||||||| |
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| T |
834085 |
ggtttatgcgtccagaaactgcacagggcatatttgttaatttcagagacttgtaccattacaatagagacaagctaccctttgctgctgcacaaattgg |
833986 |
T |
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| Q |
321 |
acaggcatttagaaatgaggtttgt |
345 |
Q |
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|||||| |||||||| ||||||||| |
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| T |
833985 |
acaggcttttagaaacgaggtttgt |
833961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 203 - 345
Target Start/End: Complemental strand, 940370 - 940228
Alignment:
| Q |
203 |
cttttttcaactgaaacaggttcatgcgtccagaaactgcacagggcatatttgttaatttcaaagacttgtactattacaatggaaacaagctaccctt |
302 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
940370 |
cttttttcaactgaaacaggtttatgcgtccagaaactgctcagggcatattcgttaatttcaaggatttgtactattacaatggaaacaagctaccctt |
940271 |
T |
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| Q |
303 |
tgctgctgcacaaattggacaggcatttagaaatgaggtttgt |
345 |
Q |
| |
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|||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
940270 |
tgctgctgcacaaattgggcaggcttttagaaatgaggtttgt |
940228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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