View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18111_high_15 (Length: 298)
Name: NF18111_high_15
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18111_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 21 - 293
Target Start/End: Original strand, 5294688 - 5294960
Alignment:
| Q |
21 |
ccaaactcagttacaaatgttctgtttgtaataaagagttttcttcttatcaagcactcggtggacacaaagcaagtcaccggaaaaactccgtcggtgg |
120 |
Q |
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| T |
5294688 |
ccaaactcagttacaaatgttctgtttgtaataaagagttttcttcttatcaagcgctcggtggacacaaagcaagtcaccggaaaaactccgtcggtgg |
5294787 |
T |
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| Q |
121 |
cggtggtgatgatcatccatcaacttcctcagctgctaccacaagctcagccaacacaaacggtggtggtgttagatctcatgagtgttcgatttgtcat |
220 |
Q |
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| T |
5294788 |
cggtggtgatgatcatccatcaacttcctcagctgctaccacaagctcagccaacacaaacggtggtggtgttagatctcatgagtgttcgatttgtcat |
5294887 |
T |
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| Q |
221 |
aggtcgtttccgacaggacaagctttgggtggacacaaacgttgtcactatgaaggtgttgttggtggtggtg |
293 |
Q |
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| T |
5294888 |
aggtcgtttccgacaggacaagctttgggtggacacaaacgttgtcactatgaaggtgttgttggtggtggtg |
5294960 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 47436107 - 47436024
Alignment:
| Q |
23 |
aaactcagttacaaatgttctgtttgtaataaagagttttcttcttatcaagcactcggtggacacaaagcaagtcaccggaaa |
106 |
Q |
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| T |
47436107 |
aaactcagtcacaaatgctcagtctgcaacaaagctttttcatcttatcaagccctaggtggacacaaagccagtcaccggaaa |
47436024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 47435932 - 47435854
Alignment:
| Q |
198 |
ctcatgagtgttcgatttgtcataggtcgtttccgacaggacaagctttgggtggacacaaacgttgtcactatgaagg |
276 |
Q |
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| T |
47435932 |
ctcatgagtgttccatctgtcacaaatcctttcctactggacaggctttgggaggacacaagcgttgtcactacgaagg |
47435854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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