View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18111_high_18 (Length: 272)
Name: NF18111_high_18
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18111_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 39863730 - 39863476
Alignment:
| Q |
1 |
ttgctgcaatcgacaaagttttatccgaagggaataccatttcattacaatttcaacattctgttcaaggacaagaagaggtcgcaaaactggatcccag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39863730 |
ttgctgcaatcgacaaagttttatccgaagggaataccatttcattacaatttcagcattctgttcaaggacaagaagaggtcgcaaaactggatcccag |
39863631 |
T |
|
| Q |
101 |
cctccctaagcaacttcttcaggaattgagggatattgcctttaaagaagacttggttgaaaaattaaaagaaggtatctctcctaaagttaacttcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39863630 |
cctccctaagcaacttcttcaggaattgagggatattgcctttaaagaagacttggttgaaaaattaaaagaaggtatctctcctaaagttaacttcaat |
39863531 |
T |
|
| Q |
201 |
gcagtcaaggaaaaagttgatgctaatgctgacgctttcacgtctcgtcaattag |
255 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39863530 |
acagtcaaggaaaaaattgatgctaatgctgacgctttcacgtctcgtcaattag |
39863476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 39737568 - 39737796
Alignment:
| Q |
1 |
ttgctgcaatcgacaaagttttatccgaagggaataccatttcattacaatttcaacattctgttcaaggacaagaagaggtcgcaaaactggatcccag |
100 |
Q |
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| T |
39737568 |
ttgcggcaattgacagagttttatcggaagggattactctttccttaaaatcccagcattctgtccaaggacgagaata---ctcaaaacgggatcccaa |
39737664 |
T |
|
| Q |
101 |
cctccctaagcaacttcttcaggaattgagggatattgcctttaaagaagacttggttgaaaaattaaaagaaggtatctctcctaaagttaacttcaat |
200 |
Q |
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| T |
39737665 |
tctccctgagcaacttcttcaggaattaagggatattgcttttaaaggagacttggttgaaaaacttaaagaaggtctcacttctaaagttaatttcaac |
39737764 |
T |
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| Q |
201 |
gcagtcaaggaaaaagttgatgctaatgctga |
232 |
Q |
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| T |
39737765 |
gcagtcaaggaaaaaattgacgctaatgctga |
39737796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 38980430 - 38980643
Alignment:
| Q |
17 |
agttttatccgaagggaataccatttcattacaatttcaacattctgttcaaggacaagaagaggtcgcaaaactggatcccagcctccctaagcaactt |
116 |
Q |
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||||||||| ||||||| ||||||||| || ||| ||| |||||||| |||| |||||||| || |||||||| |||||| ||||||| || ||||| |
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| T |
38980430 |
agttttatcagaagggattaccatttccgtaaaatctcagcattctgtccaagaacaagaag---tctcaaaactgtatcccaacctccctgagaaactt |
38980526 |
T |
|
| Q |
117 |
cttcaggaattgagggatattgcctttaaagaagacttggttgaaaaattaaaagaaggtatctctcctaaagttaacttcaatgcagtcaaggaaaaag |
216 |
Q |
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| T |
38980527 |
cttcaggaattgtgggatattgtctttgaatgagacttggttgaaaaattatttgaaggtctctttactaaagacaacttcaatgcagtcaaggaaaaat |
38980626 |
T |
|
| Q |
217 |
ttgatgctaatgctgac |
233 |
Q |
| |
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|||| |||||||||||| |
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| T |
38980627 |
ttgacgctaatgctgac |
38980643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 39856520 - 39856299
Alignment:
| Q |
9 |
atcgacaaagttttatccgaagggaataccatttcattacaatttcaacattctgttcaaggacaagaagaggtcgcaaaactggatcccagcctcccta |
108 |
Q |
| |
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||||||| ||| ||||| ||||||| ||| |||| ||| ||| ||| |||||||||||| |||||||| || | || |||||||||| | ||| |
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| T |
39856520 |
atcgacagagtgttatcagaagggattactctttccttaaaatctcaccattctgttcaaaaacaagaag---tctcgaagctggatcccaacttccaag |
39856424 |
T |
|
| Q |
109 |
agcaacttcttcaggaattgagggatattgcctttaaagaagacttggttgaaaaattaaaagaaggtatctctcctaaagttaacttcaatgcagtcaa |
208 |
Q |
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||||||||||| ||||||||||||||| || |||||||||||||||||||||||||| ||| ||||| || |||||||||||| ||||| |||||| |
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| T |
39856423 |
agcaacttcttatggaattgagggatatcgcttttaaagaagacttggttgaaaaatttaaacaaggtctcactcctaaagttagtttcaacacagtcat |
39856324 |
T |
|
| Q |
209 |
ggaaaaagttgatgctaatgctgac |
233 |
Q |
| |
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||||||| |||| ||||||| |||| |
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| T |
39856323 |
ggaaaaaattgaagctaatgttgac |
39856299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 101 - 233
Target Start/End: Complemental strand, 39846713 - 39846581
Alignment:
| Q |
101 |
cctccctaagcaacttcttcaggaattgagggatattgcctttaaagaagacttggttgaaaaattaaaagaaggtatctctcctaaagttaacttcaat |
200 |
Q |
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||||||| | |||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| ||| |||| | ||| | |||| ||||||||| |
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| T |
39846713 |
cctccctgatcaacttcttcaggaattgagggatatcgcctttaaaaaagacttggttgtaaaatttaaactaggtcttgctcgtgaagtaaacttcaat |
39846614 |
T |
|
| Q |
201 |
gcagtcaaggaaaaagttgatgctaatgctgac |
233 |
Q |
| |
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| ||||||||| ||| | || |||||||||||| |
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| T |
39846613 |
gtagtcaaggataaaatcgaagctaatgctgac |
39846581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 57 - 232
Target Start/End: Original strand, 53495249 - 53495422
Alignment:
| Q |
57 |
cattctgttcaaggacaagaagaggtcgcaaaactggatcccagcctccctaagcaacttcttcaggaattgagggatattgcctttaaagaagacttgg |
156 |
Q |
| |
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|||||||| ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
53495249 |
cattctgtcgaaggacaagaagaagtcacaaaactggatcccaacctccctaagcaacttcttcaggaattgagggatatcaccttta---aagacttgg |
53495345 |
T |
|
| Q |
157 |
ttg-aaaaattaaaagaaggtatctctcctaaagttaacttcaatgcagtcaaggaaaaagttgatgctaatgctga |
232 |
Q |
| |
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||| ||||| | ||||||||| || |||| |||||||||||||||||| |||||| |||| |||| ||||||||||| |
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| T |
53495346 |
ttgaaaaaaattaaagaaggtctcactccaaaagttaacttcaatgcaatcaaggtaaaaattgacgctaatgctga |
53495422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 32826927 - 32826843
Alignment:
| Q |
87 |
aaactggatcccagcctccctaagcaacttcttcaggaattgagggatattgcctttaaagaagacttggttgaaaaattaaaag |
171 |
Q |
| |
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||||| ||||||| |||| | |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |
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| T |
32826927 |
aaactagatcccaacctctttgagcaactttttcaggaattgagggatatcgcctttaaagaggacttggttgaaaaatttaaag |
32826843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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