View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18111_high_24 (Length: 235)
Name: NF18111_high_24
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18111_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 15878278 - 15878482
Alignment:
| Q |
14 |
caaaggaagaaatgctgataatgcaacaaaagagattctataannnnnnnnnn-atgaaaggagatttcgaatgttgtgaggttcaagaaatgcaagtaa |
112 |
Q |
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| T |
15878278 |
caaaggaagaaatgctgattatgcaacaaaagagattctataagttttttttttatgaaaggagatttcgaaaattgtgaggtccaagaattgcaagtaa |
15878377 |
T |
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| Q |
113 |
aatggaaatggagaaagatctagtgtgaaattagttatatcgtttctgggatgtaaataaagcatgatgatatactttatagtaagatttcttttagaga |
212 |
Q |
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| T |
15878378 |
aatggaaatggagaaagatctagtgtgaaattagttatatcgtttctgggatgtaaataaagcatgatgatatactttatagtaagatttcttttagagg |
15878477 |
T |
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| Q |
213 |
atact |
217 |
Q |
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||||| |
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| T |
15878478 |
atact |
15878482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 15908460 - 15908313
Alignment:
| Q |
69 |
gaaaggagatttcgaatgttgtgaggttcaagaaatgcaagtaaaatggaaatggagaaagatctagtgtgaaattagttatatcgtttctgggatgt-a |
167 |
Q |
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| T |
15908460 |
gaaaagagattttgaaagtggtgaggt-caagaattgcaagtaaaatggaaatggagaaagatctagtgtgaacttagttatatcgtttctgggatgtaa |
15908362 |
T |
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| Q |
168 |
aataaagcatgatgatatactttatagtaagatttcttttagagaatac |
216 |
Q |
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| T |
15908361 |
aataaagcatgatgatatactttatagtaagatttcttttagaggatac |
15908313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 69 - 201
Target Start/End: Complemental strand, 15891247 - 15891114
Alignment:
| Q |
69 |
gaaaggagatttcgaatgttgtgaggttcaagaaatgcaagtaaaatggaaatggagaaagatctagtgtgaaattagttatatcgtttctgggatgt-a |
167 |
Q |
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|||| ||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
15891247 |
gaaaagagattttgaaagttgtgaggttcaagaattgtaagtaaaatggaaatggagaaagatctagggtgaaattagttatatcgtttctgggatgtaa |
15891148 |
T |
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| Q |
168 |
aataaagcatgatgatatactttatagtaagatt |
201 |
Q |
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| T |
15891147 |
aacaaagcatgatgatatactttatagtaagatt |
15891114 |
T |
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