View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18111_high_7 (Length: 412)
Name: NF18111_high_7
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18111_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 25 - 398
Target Start/End: Original strand, 39863698 - 39864071
Alignment:
| Q |
25 |
tcccttctgataacactctgtcgatcgcaccaatgacatcctcatctatcatagcatcaatatctttcaagtctaggctgattttttgtgaagagctggc |
124 |
Q |
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||||||| ||||| ||| ||||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39863698 |
tcccttcggataaaactttgtcgattgcagcaataacatcctcacctatcatagcatcaatatctttcaagtctaggctgattttttgtgaagagctggc |
39863797 |
T |
|
| Q |
125 |
tttgctggaaccttcattgtgagtggtctctatgtccactttttccggttgacctttagcgcttttgtcaacattggtttgttgcagcaatgatattctc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39863798 |
tttgctggaaccttcattgtgagtggtctctatgtccactttttccggttgacctttagcgcttttgtcaacattggtttgttgcagcaatgatattctc |
39863897 |
T |
|
| Q |
225 |
aactcctcaagtatcatatcattaattttttcaaagtctatgccgacgaattttgaattgttggctttgctggtaccttcatcattagtggtctctacgt |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39863898 |
aactcctcaagtatcatatcattaattttttcaaagtctatgccgacgaattttgaattgttggctttgctggtaccttcatcattagtggtctctaagt |
39863997 |
T |
|
| Q |
325 |
ccacttttgactgttgagcttcatttttatcaacatttgtttcttcggctaaactgtttttgttttgctcctcc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39863998 |
ccacttttgactgttgagcttcatttttatcaacatttgtttcttcggctaaactgtttttgttttgctcctcc |
39864071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 39856473 - 39856638
Alignment:
| Q |
2 |
gtgagattttgaggaaagagtaatcccttctgataacactctgtcgatcgcaccaatgacatcctcatctatcatagcatcaatatctttcaagtctagg |
101 |
Q |
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| T |
39856473 |
gtgagattttaaggaaagagtaatcccttctgataacactctgtcgatcgcaccaatgacatcctcatctatcatagcatcaatttctttcaagtctttg |
39856572 |
T |
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| Q |
102 |
ctgattttttgtgaagagctggctttgctggaaccttcattgtgagtggtctctatgtccactttt |
167 |
Q |
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|||| || | ||| | |||||||| ||| |||||||| | |||||||||||| ||||||||| |
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| T |
39856573 |
ctgacaaattttaaagtgttggctttgttggtaccttcatcataagtggtctctatatccactttt |
39856638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 39897058 - 39897150
Alignment:
| Q |
13 |
aggaaagagtaatcccttctgataacactctgtcgatcgcaccaatgacatcctcatctatcatagcatcaatatctttcaagtctaggctga |
105 |
Q |
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| T |
39897058 |
aggaaagagtaatcccttctgataaaactctgtcgattgcagcaatgacatcctcatctatcatagcatcaatttcttccaagtctatgctga |
39897150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 236 - 347
Target Start/End: Original strand, 39856542 - 39856653
Alignment:
| Q |
236 |
tatcatatcattaattttttcaaagtctatgccgacgaattttgaattgttggctttgctggtaccttcatcattagtggtctctacgtccacttttgac |
335 |
Q |
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||||||| ||| ||||| || |||||| ||| ||| |||||| || ||||||||||| ||||||||||||||| ||||||||||| |||||||||||| |
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| T |
39856542 |
tatcatagcatcaatttctttcaagtctttgctgacaaattttaaagtgttggctttgttggtaccttcatcataagtggtctctatatccacttttgac |
39856641 |
T |
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| Q |
336 |
tgttgagcttca |
347 |
Q |
| |
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|||||||||||| |
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| T |
39856642 |
tgttgagcttca |
39856653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 38980468 - 38980373
Alignment:
| Q |
3 |
tgagattttgaggaaagagtaatcccttctgataacactctgtcgatcgcaccaatgacatcctcatctatcatagcatcaatatctttcaagtct |
98 |
Q |
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||||||||| ||||| ||||||||||||||||| ||||||| ||| | | |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38980468 |
tgagattttacggaaatggtaatcccttctgataaaactctgttgatagaagcaatgacatcctcatctatcatagcatcaacttctttcaagtct |
38980373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 39737619 - 39737483
Alignment:
| Q |
6 |
gattttgaggaaagagtaatcccttctgataacactctgtcgatcgcaccaatgacatcctcatctatcatagcatcaatatctttcaagtctaggctga |
105 |
Q |
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|||||| ||||||||||||||||||| ||||| |||||||| || || |||||||||||||||||| ||||||||||| |||| |||||| ||||| |
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| T |
39737619 |
gattttaaggaaagagtaatcccttccgataaaactctgtcaattgccgcaatgacatcctcatctaccatagcatcaaattcttcagagtctatgctga |
39737520 |
T |
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| Q |
106 |
ttttttgtgaagagctggctttgctggaaccttcatt |
142 |
Q |
| |
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| || ||||| | ||| |||||||| ||||||||| |
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| T |
39737519 |
ctaattttgaagtgttggatttgctggtaccttcatt |
39737483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 39737536 - 39737484
Alignment:
| Q |
254 |
ttcaaagtctatgccgacgaattttgaattgttggctttgctggtaccttcat |
306 |
Q |
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|||| ||||||||| ||| ||||||||| |||||| ||||||||||||||||| |
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| T |
39737536 |
ttcagagtctatgctgactaattttgaagtgttggatttgctggtaccttcat |
39737484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 397
Target Start/End: Complemental strand, 39737477 - 39737405
Alignment:
| Q |
328 |
cttttgactgttgagcttca---tttttatcaacatttgtttcttcggctaaactgtttttgttttgctcctc |
397 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||| || | | |||| ||||| |||||| |
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| T |
39737477 |
cttttgactgttgagcttcaatgtttttgtcaacatttgtttcttcggatataatattttcgtttttctcctc |
39737405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 32826957 - 32827043
Alignment:
| Q |
4 |
gagattttgaggaaagagtaatcccttctgataacactctgtcgatcgcaccaatgacatcctcatctatcatagcatcaatatctt |
90 |
Q |
| |
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|||||||| ||| || ||||||||||||| |||| |||||||| || ||| ||| || ||||||||||||||||||||||| |||| |
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| T |
32826957 |
gagattttaagggaaaagtaatcccttctaataaaactctgtcaattgcagcaacaacgtcctcatctatcatagcatcaatttctt |
32827043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 309
Target Start/End: Original strand, 32827024 - 32827097
Alignment:
| Q |
236 |
tatcatatcattaattttttcaaagtctatgccgacgaattttgaattgttggctttgctggtaccttcatcat |
309 |
Q |
| |
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||||||| ||| ||||| |||||||||| ||| ||| || |||||| ||||| ||||||||||||||| ||||| |
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| T |
32827024 |
tatcatagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttgcctttgctggtaccttaatcat |
32827097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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