View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18111_high_8 (Length: 412)
Name: NF18111_high_8
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18111_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 177 - 396
Target Start/End: Original strand, 42159661 - 42159882
Alignment:
| Q |
177 |
ttttggtttactcctaagtgatatttttagtgtacatttttgtttgttt--gtttcgaatggatatttttagtatacatgtatggtaaattattattgct |
274 |
Q |
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| T |
42159661 |
ttttggtttactcctaagtgatatttttagtgtacatttttttttttttttgtttcgaatggatatttttagtatacatgtatggtaaattattattgct |
42159760 |
T |
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| Q |
275 |
aaaacactgtatagtaaattattaatgttgaagtataannnnnnnnnaatcttgagctgccttgatttgacaagttagaaatttgggttaaaagtgttaa |
374 |
Q |
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| T |
42159761 |
aaaacactgtatagtaaattattaatgttgaagtataatttttttttaatgttgagctgccttgatttgacaagttagaaatttgggttaaaagggttaa |
42159860 |
T |
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| Q |
375 |
caattttctcaatcttcctttc |
396 |
Q |
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|||||||||||||||||||||| |
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| T |
42159861 |
caattttctcaatcttcctttc |
42159882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 42159454 - 42159632
Alignment:
| Q |
1 |
tataatgctagctgttccttgggtttgttgctttcattgaactgaacgtgttgctatgtggttttgactacttggaaatttgggttaaaaaggtttaaaa |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42159454 |
tataatgctagttgttccttgggtttgttgctttcattgaactgaacgtgttgctatgtggttttgactacttggaaatttgggttaaaaaggtttaaaa |
42159553 |
T |
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| Q |
101 |
tggattttctc-aatcttaaccaccaacaagtacgaagatctagcttctagaaattcattttagaaaagcaattaactt |
178 |
Q |
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| T |
42159554 |
tggattttctcaaatcttaaccaccaacaagtacgaagatctagcttctagaaattcattttagaaaagcaattaactt |
42159632 |
T |
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