View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18111_low_1 (Length: 966)
Name: NF18111_low_1
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18111_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 881; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 881; E-Value: 0
Query Start/End: Original strand, 1 - 965
Target Start/End: Original strand, 39398117 - 39399081
Alignment:
| Q |
1 |
atgttaaatgatcgtatacacagcatttccaaacttcagtcttctttagccaaggctgagggtcatctttctaggcttgcacccgatacaccctattccg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39398117 |
atgttaaatgatcgtatacacagcatttccaaacttcagtcttctttggccaaggctgaggatcatctttctaggcttgcacccgatacaccctattccg |
39398216 |
T |
|
| Q |
101 |
agttagaatatgtgtaagattatctttgataaaaaccggttaacatgtcttcctccttgcagagtcgtctgcagttttggttgtacaatatagtcaaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
39398217 |
agttagaatatgtgtaagattatctttgataaaaaccggttaacatgtcttcctccttgcagagtcgtctgcagtttttgttgtacaacatagtcaaatg |
39398316 |
T |
|
| Q |
201 |
nnnnnnnnnnnngactcttgtccaagtgtagattacaaggaatgggttttgagagaggttggggtgatatagccgaacgggttctagagacgatgcatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
39398317 |
tttttattttttgactcttgtccaagtgtagattacaaggaatgggttttgagagaggttggggtgatatagccgagcgggttctagagacgatgcatct |
39398416 |
T |
|
| Q |
301 |
gctcttggaccttcttcaggctcctgatccttctacactagaaacttttctcgggagagtgccaatggtgttcaatgtggttatattatctcctcatggt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39398417 |
gctcttggaccttcttcaggctcctgatccttctacactagaaacttttctcgggagagtgccaatggtgttcaatgtggttatattatctcctcatggt |
39398516 |
T |
|
| Q |
401 |
tattttgggcaagccaatgtcctgggtttgcctgacactggtgggcaggtattcttatttatcatatattgcattataatttttaatctggacgtgtgaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39398517 |
tattttgggcaagccaatgtcctgggtttgcctgacactggtgggcaggtattcttatttatcatatattgcattataatttttaatctggacgtgtgaa |
39398616 |
T |
|
| Q |
501 |
tatcgttcgttgtccttggccttctttatcagtgtgttcaaatcttttgcattggttgcgaaaatattgtgtacaagcataagcatgatcctacatgaga |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39398617 |
tatcgttcgttgtccttggccttctttatcagtgtgttcaaatcttttgcattggttgcgaaaatattgtgtacaagcataagcatgatcctacatgaga |
39398716 |
T |
|
| Q |
601 |
tatttttgtctgcaggttgtatacatactggatcaggtgcgtgcccttgagaacgagatgctccttaggatcaagaaacaaggacttgatctcacaccta |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39398717 |
tatttttgtctgcaggttgtatacatactggatcaggtgcgtgcccttgagaacgagatgctccttaggatcaagaaacaaggacttgatctcacaccta |
39398816 |
T |
|
| Q |
701 |
gaattctaattgtgagtgtgtaactacttacaccatttcttcaactttgacttggattttcagtagatgannnnnnnncttcggttgaaatcaaatttta |
800 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
39398817 |
gaattctaattgtgagtgtgtaactacttacaccatttcttcaactttgacttggattttcggtagatgattttttttcttcggttgaaatcaaatttta |
39398916 |
T |
|
| Q |
801 |
gtttaatttttgttgtgaaggttaccaggttaatacctgatgcaaaggggacaacatgcaaccagcgactagaaaaagtctgtggtaccgaacatactca |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39398917 |
gtttaatttttgttgtgaaggttaccaggttaatacctgatgcaaaggggacaacatgcaaccagcgactagaaaaagtctgtggtaccgaacatactca |
39399016 |
T |
|
| Q |
901 |
tattttgcgagttcctttcagatcagagaaaggaattcttcgtaaatggatctcaaggtttgatg |
965 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39399017 |
tattttgcgagttcctttcagatcagagaaaggaattcttcgtaaatggatctcaaggtttgatg |
39399081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 5e-65; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 229 - 467
Target Start/End: Complemental strand, 44517538 - 44517300
Alignment:
| Q |
229 |
tagattacaaggaatgggttttgagagaggttggggtgatatagccgaacgggttctagagacgatgcatctgctcttggaccttcttcaggctcctgat |
328 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| || | ||||| |||| |||||||||||||| ||||| |||||||||| |||||| |
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|
| T |
44517538 |
tagattacaaggaatggggtttgagagaggttggggtgatactgctgcgcgggtattagaaacgatgcatctgctgttggatattcttcaggcccctgat |
44517439 |
T |
|
| Q |
329 |
ccttctacactagaaacttttctcgggagagtgccaatggtgttcaatgtggttatattatctcctcatggttattttgggcaagccaatgtcctgggtt |
428 |
Q |
| |
|
||||||||||| || |||||||| |||||||| ||||||||||||||||| |||||||| ||||| ||||| | ||||||||||||||||||||||||| |
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| T |
44517438 |
ccttctacacttgagacttttcttgggagagtaccaatggtgttcaatgttgttatattgtctccgcatggcttctttgggcaagccaatgtcctgggtt |
44517339 |
T |
|
| Q |
429 |
tgcctgacactggtgggcaggtattcttatttatcatat |
467 |
Q |
| |
|
| ||||| ||||| || |||||| ||||||||||||||| |
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|
| T |
44517338 |
tacctgatactggcggacaggtaatcttatttatcatat |
44517300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 816 - 965
Target Start/End: Complemental strand, 44516815 - 44516666
Alignment:
| Q |
816 |
tgaaggttaccaggttaatacctgatgcaaaggggacaacatgcaaccagcgactagaaaaagtctgtggtaccgaacatactcatattttgcgagttcc |
915 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||| || || |||| ||||||||||| ||||| |
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| T |
44516815 |
tgaaggttactaggttaatacctgatgcaaaggggacaacatgcaaccagagactagaaagagtcagtggcactgattatacacatattttgcgtgttcc |
44516716 |
T |
|
| Q |
916 |
tttcagatcagagaaaggaattcttcgtaaatggatctcaaggtttgatg |
965 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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|
| T |
44516715 |
attcagatcagaaaaaggaattctccgtaaatggatctcaaggtttgatg |
44516666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 612 - 719
Target Start/End: Complemental strand, 44517017 - 44516910
Alignment:
| Q |
612 |
gcaggttgtatacatactggatcaggtgcgtgcccttgagaacgagatgctccttaggatcaagaaacaaggacttgatctcacacctagaattctaatt |
711 |
Q |
| |
|
||||||||| || ||||| ||||| ||||||||||||||||| |||||||| | ||||| ||||||||||||||||| |||| ||||||||| ||||| |
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|
| T |
44517017 |
gcaggttgtttatatactcgatcaagtgcgtgcccttgagaatgagatgcttgctcggatccagaaacaaggacttgatttcactcctagaattttaatt |
44516918 |
T |
|
| Q |
712 |
gtgagtgt |
719 |
Q |
| |
|
|| ||||| |
|
|
| T |
44516917 |
gtaagtgt |
44516910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 44517764 - 44517646
Alignment:
| Q |
1 |
atgttaaatgatcgtatacacagcatttccaaacttcagtcttctttagccaaggctgagggtcatctttctaggcttgcacccgatacaccctattccg |
100 |
Q |
| |
|
|||||||||||| | |||| | |||||||||||||||||| |||| | ||||| |||| ||||||||||| |||||| || ||||||| |||||| | |
|
|
| T |
44517764 |
atgttaaatgatagactacaaaacatttccaaacttcagtccgctttggtcaaggtcgaggatcatctttctaagcttgcgcctgatacactctattctg |
44517665 |
T |
|
| Q |
101 |
agttagaatatgtgtaaga |
119 |
Q |
| |
|
| || ||||| |||||||| |
|
|
| T |
44517664 |
aatttgaatacgtgtaaga |
44517646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 32775161 - 32775218
Alignment:
| Q |
394 |
tcatggttattttgggcaagccaatgtcctgggtttgcctgacactggtgggcaggta |
451 |
Q |
| |
|
||||||||||||||||||||| |||| || || ||||| ||||||||||| |||||| |
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|
| T |
32775161 |
tcatggttattttgggcaagcagatgttcttggcttgccagacactggtggccaggta |
32775218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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