View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18111_low_10 (Length: 366)
Name: NF18111_low_10
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18111_low_10 |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 24103023 - 24102676
Alignment:
| Q |
1 |
taaggaggtcatgcttaaacaattctagattaaagtcatttattctaggaattgtnnnnnnntatgatgcatttagtgtgaggtgctagttctatttaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24103023 |
taaggaggtcatgcttaaacaattctagattaaagtcatttattctaggaattgtaaaaaaatatgatgcatttagtgtgaggtgctagttctatttaaa |
24102924 |
T |
|
| Q |
101 |
atgtaaaccatataagtatgacttattatgtgattttggttcaatataaataatgtttcgtataattgtatgaaattcagttactagtgttatttttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
24102923 |
atgtaaaccatataagtatgacttattatgtgattttggttcaatataaataatgtttcgtataattgtatggaattcaattactagtgttatttttctt |
24102824 |
T |
|
| Q |
201 |
tcaatatttagttaa-ttttgcaatatttgttctagtggatcttgtattggtttatctgatatcatagtgagtgatatttcattactattgatgatcata |
299 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24102823 |
tcaatatttagttaatttttgcaatatttgttctagtggatcttgtattggtttatctgatatcatagtgagtg--atttcattactattgatgatcata |
24102726 |
T |
|
| Q |
300 |
accagcagcaatattgttcagctagtagagaactaattgtggcatacttt |
349 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24102725 |
accagcagcaatattattcagctagtagagaactaattgtggcatacttt |
24102676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 63 - 203
Target Start/End: Complemental strand, 24109408 - 24109263
Alignment:
| Q |
63 |
tatgatgcatttagtgtgaggtgctagttctatttaaaatgtaaaccatataagtatgacttattatgtgattt-----tggttcaatataaataatgtt |
157 |
Q |
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||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||||||||||| |
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| T |
24109408 |
tatgatgtatttagtgtgaggtgctggttatatttaaaatgtaagccatataagtatgacttattatgtgatttaattttagttcaacataaataatgtt |
24109309 |
T |
|
| Q |
158 |
tcgtataattgtatgaaattcagttactagtgttatttttctttca |
203 |
Q |
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|| ||||| | ||||||||||||||||||||||||||||| ||||| |
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| T |
24109308 |
tcatataactttatgaaattcagttactagtgttatttttgtttca |
24109263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 63 - 203
Target Start/End: Original strand, 4267371 - 4267510
Alignment:
| Q |
63 |
tatgatgcatttagtgtgaggtgctagttctatttaaaatgtaaaccatataagtatgacttattatgtgattttggttcaatataaataatgtttcgta |
162 |
Q |
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||||||||||||||||||||||||| ||| |||||||||| || |||| || |||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
4267371 |
tatgatgcatttagtgtgaggtgcttgttatatttaaaataaaagccattta-gtatgatttattatgtgattttggttcaatataaataatgtttcata |
4267469 |
T |
|
| Q |
163 |
taattgtatgaaattcagttactagtgttatttttctttca |
203 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4267470 |
taattgtatgaaattcagttactagtgttatttttctttca |
4267510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 63 - 203
Target Start/End: Original strand, 4256817 - 4256955
Alignment:
| Q |
63 |
tatgatgcatttagtgtgaggtgctagttctatttaaaatgtaaaccatataagtatgacttattatgtgattttggttcaatataaataatgtttcgta |
162 |
Q |
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||||||||||||||||||||||||| ||| |||||||| | || |||| || |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4256817 |
tatgatgcatttagtgtgaggtgcttgttatatttaaatta-aagccattta-gtatgacttattatgtgattttggttcaatataaataatgtttcata |
4256914 |
T |
|
| Q |
163 |
taattgtatgaaattcagttactagtgttatttttctttca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4256915 |
taattgtatgaaattcagttactagtgttatttttctttca |
4256955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 248 - 349
Target Start/End: Original strand, 4267606 - 4267705
Alignment:
| Q |
248 |
tggtttatctgatatcatagtgagtgatatttcattactattgatgatcataaccagcagcaatattgttcagctagtagagaactaattgtggcatact |
347 |
Q |
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|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4267606 |
tggtttatctgatatcatagtgagtgat--ttcattactattgatgatcataaccagcagcaatattgttcagctagtagagaactaattgtggcatact |
4267703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 4622063 - 4621953
Alignment:
| Q |
74 |
tagtgtgaggtgctagttctatttaaaatgtaaaccatataagtatgacttattatgtgattttggttcaatataaataatgtttcgtataattgtatga |
173 |
Q |
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|||||||||||||||||| |||||||||| ||| |||||||| | | ||||||||||| ||||| |||||||| |||||||| | | ||||||||||||| |
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| T |
4622063 |
tagtgtgaggtgctagttatatttaaaatctaagccatataaatgtaacttattatgtcattttagttcaatagaaataatgatacatataattgtatga |
4621964 |
T |
|
| Q |
174 |
aattcagttac |
184 |
Q |
| |
|
|||||| |||| |
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|
| T |
4621963 |
aattcatttac |
4621953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 4260380 - 4260439
Alignment:
| Q |
144 |
atataaataatgtttcgtataattgtatgaaattcagttactagtgttatttttctttca |
203 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4260380 |
atataaataatgtctcatataattgtatgaaattcagttactagtgttatttttatttca |
4260439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4267274 - 4267328
Alignment:
| Q |
1 |
taaggaggtcatgcttaaacaattctagattaaagtcatttattctaggaattgt |
55 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
4267274 |
taaggaggtcatgcttaaacaatactagattgaagtcatttattctaggaattgt |
4267328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 4260791 - 4260845
Alignment:
| Q |
209 |
tagttaattttgcaatatttgttctagtggatcttgtattggtttatctgatatca |
264 |
Q |
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|
|||||||||||| |||||||||||| |||||||| || |||||||||||||||||| |
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|
| T |
4260791 |
tagttaattttgtaatatttgttctggtggatctcgt-ttggtttatctgatatca |
4260845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4256720 - 4256766
Alignment:
| Q |
1 |
taaggaggtcatgcttaaacaattctagattaaagtcatttattcta |
47 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| |||||||||| |
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|
| T |
4256720 |
taaggaggtcatgcttaaacaatactagattatagtaatttattcta |
4256766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 4299985 - 4300067
Alignment:
| Q |
95 |
tttaaaatgtaaaccatataagtatgacttattatgtgattttggttcaatataaataatgtttcgtataattgtatgaaatt |
177 |
Q |
| |
|
|||||| ||||| |||||||| ||||| ||||||||| |||| ||||||||||||||||| | | |||| ||||||| |||| |
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|
| T |
4299985 |
tttaaattgtaagccatataaatatgatttattatgttatttgagttcaatataaataatgatacttatatttgtatggaatt |
4300067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 4260337 - 4260385
Alignment:
| Q |
66 |
gatgcatttagtgtgaggtgctagttctatttaaaatgtaaaccatataa |
115 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
4260337 |
gatgcatttagt-tgaggtgcttgttatatttaaaatgtaaaccatataa |
4260385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4794 - 4840
Alignment:
| Q |
1 |
taaggaggtcatgcttaaacaattctagattaaagtcatttattcta |
47 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| || ||||||| |
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|
| T |
4794 |
taaggaggtcatgcttaaacaatgctagattaaagttatatattcta |
4840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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