View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18111_low_11 (Length: 362)

Name: NF18111_low_11
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18111_low_11
NF18111_low_11
[»] chr4 (3 HSPs)
chr4 (18-352)||(2901472-2901807)
chr4 (18-103)||(2873018-2873103)
chr4 (18-107)||(2883220-2883309)
[»] chr2 (3 HSPs)
chr2 (18-108)||(44226355-44226445)
chr2 (18-108)||(44237153-44237243)
chr2 (20-109)||(44214184-44214273)
[»] chr7 (5 HSPs)
chr7 (21-108)||(39551713-39551800)
chr7 (21-108)||(39359740-39359827)
chr7 (27-107)||(39542498-39542578)
chr7 (21-109)||(39568559-39568647)
chr7 (21-75)||(39345195-39345249)
[»] chr1 (1 HSPs)
chr1 (32-91)||(2152544-2152603)


Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 2901807 - 2901472
Alignment:
Q  18 aacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagtcattttctac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901807 aacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagtcattttctac 2901708  T
Q  118 acaaattccttgtcnnnnnnncctatctaacttatccctcatatctaattgcgagcttcttaattatgtcacatttctataaaaaccacacatgtgtccg 217  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2901707 acaaattccttgtctttttttcctatctaacttatccctcatatctaattgcgagcttctttattatgtcacatttctataaaaaccacacatgtgtccg 2901608  T
Q  218 gaaatatactttcggactg-nnnnnnnnnctcttcgaaagtatacttccaggctgcataaaaactgttttttccgaaagtatccttctaacttggcgtcg 316  Q
    ||||||||||||||||| |          ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2901607 gaaatatactttcggacggaaaaaaaaaactcttcgaaagtatacttccaggttgcataaaaactgttttttccgaaagtatccttctaacttggcgtcg 2901508  T
Q  317 cacaaatctcactaagtataagaagtaatttctgtg 352  Q
    ||||||||||||||||||||||||||||||||||||    
T  2901507 cacaaatctcactaagtataagaagtaatttctgtg 2901472  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 2873018 - 2873103
Alignment:
Q  18 aacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  2873018 aacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggagttggatcaagatatggt 2873103  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 2883220 - 2883309
Alignment:
Q  18 aacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagt 107  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||||||||    
T  2883220 aacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggtgtcggatcacgttatggttagt 2883309  T

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Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 44226445 - 44226355
Alignment:
Q  18 aacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagtc 108  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44226445 aacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggagttggatcacgttatggttagtc 44226355  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 44237243 - 44237153
Alignment:
Q  18 aacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagtc 108  Q
    ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  44237243 aacatgatgttcatattggagaaatgactgtgagagaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagtc 44237153  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 44214273 - 44214184
Alignment:
Q  20 catgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagtca 109  Q
    ||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||| ||||| ||| |||||    
T  44214273 catgatgttcacattggagaaatgactgtgagggaaaccttagctttctcagcaaggtgccaaggagttggatctcgttacggtgagtca 44214184  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 39551800 - 39551713
Alignment:
Q  21 atgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagtc 108  Q
    ||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||||  |||||| |||||  | ||||||||||||||    
T  39551800 atgatcttcacattggagaaatgactgttagagaaaccttggctttctcagcaagggtccaaggagttgggcctcgttatggttagtc 39551713  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 39359740 - 39359827
Alignment:
Q  21 atgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagtc 108  Q
    ||||| |||| |||||||||||||||||||| ||||| ||||| |||||||| ||   |||||| |||||| | ||||||||||||||    
T  39359740 atgatcttcacattggagaaatgactgttagagaaaccttggccttctcagctagagtccaaggagttggacctcgttatggttagtc 39359827  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 39542578 - 39542498
Alignment:
Q  27 ttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagt 107  Q
    |||| |||||||||||||||||||| ||||| ||||| ||||| ||||||  |||||| |||||  | |||||||||||||    
T  39542578 ttcacattggagaaatgactgttagagaaaccttggccttctcggcaagggtccaaggagttgggccgcgttatggttagt 39542498  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 39568647 - 39568559
Alignment:
Q  21 atgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagtca 109  Q
    ||||| |||| |||||||||||||| || || ||||| ||||| ||||||||| |   |||||| |||||| | |||||||||||||||    
T  39568647 atgatcttcacattggagaaatgacagtaagagaaaccttggccttctcagcacgagtccaaggagttggacctcgttatggttagtca 39568559  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 39345195 - 39345249
Alignment:
Q  21 atgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaag 75  Q
    ||||| |||| ||||||||| |||||||||| ||||||||||| ||||| |||||    
T  39345195 atgatcttcacattggagaattgactgttagagaaacattggccttctcggcaag 39345249  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 2152603 - 2152544
Alignment:
Q  32 attggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttgga 91  Q
    ||||||||||||||||| || |||||| |||||||||||||||| || ||||| ||||||    
T  2152603 attggagaaatgactgtgagagaaacactggctttctcagcaagatgtcaaggggttgga 2152544  T

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