View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18111_low_13 (Length: 359)
Name: NF18111_low_13
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18111_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 3882061 - 3882386
Alignment:
| Q |
18 |
aaatgataagttggaagaacttttcagggcttctttgggagcttttgtagcctcaagttcaggaacctataggttttgtccatctcctgactgcccctca |
117 |
Q |
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| T |
3882061 |
aaatgataagttggaagaacttttcagggcttctttgggagcttttgtagcctcaagttcaggaacctataggttttgtccatctcctgactgcccctca |
3882160 |
T |
|
| Q |
118 |
atctatagagttgcagatcccgacacagctagtgcgccatttgtttgtggggcatgttattcagagacttgtaccaggtgccacatagagtatcatccgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3882161 |
atctatagagttgcagatcccgacacagctagtgcgccatttgtttgtggggcatgttattcagagacttgtaccaggtgccatatagagtatcatccgt |
3882260 |
T |
|
| Q |
218 |
acgtttcatgtgagagataccgacaattcaaggatgatccggattcttctctgagggattggtgcaaagggaaagaacaagttaagaattgcccggcatg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3882261 |
acgtttcatgtgagagataccgacaattcaaggatgacccggattcttctctgagggattggtgcaaagggaaagaacaagttaagaattgcccggcatg |
3882360 |
T |
|
| Q |
318 |
tgggcatgtaattgagaaggtagatg |
343 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3882361 |
tgggcatgtaattgagaaggtagatg |
3882386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 39317331 - 39317045
Alignment:
| Q |
18 |
aaatgataagttggaagaacttttcagggcttctttgggagcttttgtagcctcaagttcaggaacctataggttttgtccatctcctgactgcccctca |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||| || |||||||||||||| ||| |
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| T |
39317331 |
aaatgataagttggacgaacttttcagggcttctttgggagcttttgtagcttcgagttcgggaacttataggttttgcccgtctcctgactgcccttca |
39317232 |
T |
|
| Q |
118 |
atctatagagttgcagatcccgacacagctagtgcgccatttgtttgtggggcatgttattcagagacttgtaccaggtgccacatagagtatcatccgt |
217 |
Q |
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| ||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| | |
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| T |
39317231 |
gtttatcgagttgcagattccgacacagctagtgagccatttgtttgtggggcatgttattcagagacatgtaccaagtgccacttagagtatcatccat |
39317132 |
T |
|
| Q |
218 |
acgtttcatgtgagagataccgacaattcaaggatgatccggattcttctctgagggattggtgcaaagggaaagaacaagttaaga |
304 |
Q |
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|| ||||||| |||||||||||| || |||||||||| || || || ||||||| ||| ||||| ||||||||||||||||| |||| |
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| T |
39317131 |
acctttcatgcgagagataccgagaactcaaggatgacccagactcatctctgaaggagtggtgtaaagggaaagaacaagtcaaga |
39317045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 14011866 - 14011541
Alignment:
| Q |
18 |
aaatgataagttggaagaacttttcagggcttctttgggagcttttgtagcctcaagttcaggaacctataggttttgtccatctcctgactgcccctca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14011866 |
aaatgataagttggaagaacttttcagggcttctttgggagcttttgtagcctcaagttcaggaacctataggttttgtccatctcctgactgcccctca |
14011767 |
T |
|
| Q |
118 |
atctatagagttgcagatcccgacacagctagtgcgccatttgtttgtggggcatgttattcagagacttgtaccaggtgccacatagagtatcatccgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14011766 |
atctatagagttgcagatcccgacacagctagtgttccatttgtttgtggggcatgttattcagagacttgtaccaggtgccatatagagtatcatccgt |
14011667 |
T |
|
| Q |
218 |
acgtttcatgtgagagataccgacaattcaaggatgatccggattcttctctgagggattggtgcaaagggaaagaacaagttaagaattgcccggcatg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14011666 |
acgtttcatgtgagagataccgacaattcaaggatgacccggattcttctctgagggattggtgcaaagggaaagaacaagttaagaattgcccggcatg |
14011567 |
T |
|
| Q |
318 |
tgggcatgtaattgagaaggtagatg |
343 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
14011566 |
tgggcatgtaattgagaaggtagatg |
14011541 |
T |
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