View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18111_low_14 (Length: 354)
Name: NF18111_low_14
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18111_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 7089826 - 7090031
Alignment:
| Q |
1 |
attacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgagg |
100 |
Q |
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| T |
7089826 |
attacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgagg |
7089925 |
T |
|
| Q |
101 |
cacaagctacaagtgcgcggcgagatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaaattagcccattg |
200 |
Q |
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| T |
7089926 |
cacaagctacaagtgcacggcgagatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaaattagcccattg |
7090025 |
T |
|
| Q |
201 |
actctg |
206 |
Q |
| |
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|||||| |
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| T |
7090026 |
actctg |
7090031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 7669652 - 7669857
Alignment:
| Q |
1 |
attacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgagg |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7669652 |
attacctgcttcaatgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccacaatctacaaactgagg |
7669751 |
T |
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| Q |
101 |
cacaagctacaagtgcgcggcgagatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaaattagcccattg |
200 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
7669752 |
cacaagctacaagtgcgcggagagatggccaagtggtttcactagcttccaccctttgaattatgtctaatagtaactcaggaggtaagttagcccattg |
7669851 |
T |
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| Q |
201 |
actctg |
206 |
Q |
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|||||| |
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| T |
7669852 |
actctg |
7669857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 239 - 338
Target Start/End: Original strand, 7090070 - 7090169
Alignment:
| Q |
239 |
gtgttgttggtactgatagtgaaattggtgaagaacattctggtgctatgtgagattttccatgtctatgcatatgcttagtttctacacctcttctata |
338 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7090070 |
gtgttgttggtactgatagtgatattggtgaagaacattctggtgctatgtgagattttccatgtctatgcatatgcttagtttctacacctcttctata |
7090169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 239 - 338
Target Start/End: Original strand, 7669888 - 7669987
Alignment:
| Q |
239 |
gtgttgttggtactgatagtgaaattggtgaagaacattctggtgctatgtgagattttccatgtctatgcatatgcttagtttctacacctcttctata |
338 |
Q |
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||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||||||||| ||||| |||| |
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| T |
7669888 |
gtgttgttggtgctgatagtgatattggtgaggaacattctggtgctatgtgagattttccatgtctatgtgtatgtttggtttctacatctcttatata |
7669987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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