View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18111_low_15 (Length: 344)
Name: NF18111_low_15
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18111_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 39238393 - 39238077
Alignment:
| Q |
18 |
aatgcagggagggatagtattgggtccttctgttcttggtcgaaacaaaacatttgcagatgctgtttttcctctaagaagtgtgatggtgattgaaaca |
117 |
Q |
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| T |
39238393 |
aatgcagggagggatagtattgggtccttctgttcttggtcgaaacaaaacatttgcagatgctgtttttcctctaagaagtgtgatggtgattgaaaca |
39238294 |
T |
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| Q |
118 |
atggcaaacgttggtcttttatattttctattcttggttggagtaggcatggatgcatctgcactacgacgcataggtagaaaatcaattaccatagcag |
217 |
Q |
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| T |
39238293 |
atggcaaacgttggtcttttatattttctattcttggttggagtaggcatggatgcatctgcactacgacgcataggtagaaaatcaattaccatagcag |
39238194 |
T |
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| Q |
218 |
tagctggtatgatattaccattcggaacaggagcactattttccgtctttttgttaaaaaacaccgaaaaagcttatgtaggagcttttgttctaatgct |
317 |
Q |
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| T |
39238193 |
tagctggtatgatattaccattcggaacaggagcactattttccatctttttgttaaaaaacaccgaaaaagcttatgtaggagcttttgttctaatgct |
39238094 |
T |
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| Q |
318 |
tggtgttgttctctctg |
334 |
Q |
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| T |
39238093 |
tggtgttgttctttctg |
39238077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 44056482 - 44056384
Alignment:
| Q |
60 |
aaacaaaacatttgcagatgctgtttttcctctaagaagtgtgatggtgattgaaacaatggcaaacgttggtcttttatattttctattcttggttgg |
158 |
Q |
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| T |
44056482 |
aaacgaaatatttgccaatgcagttttccctctaagaagtgtgatggtgattgaaacaatggcgaatgttggtcttctttattttcttttcttggttgg |
44056384 |
T |
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