View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18111_low_16 (Length: 319)
Name: NF18111_low_16
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18111_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 49861480 - 49861708
Alignment:
| Q |
18 |
aaccttcccattctcaattccaacaacattttactgtgccattcatttattctactcagatgaattcgaacatggataatgaaagagaaatcgaaaacaa |
117 |
Q |
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| T |
49861480 |
aaccttcccattctcaattccaacaacattttactgtgccattcatttattctactcagatgaattcgaacatggataatgaaagagaaatcgaaaacaa |
49861579 |
T |
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| Q |
118 |
ttatgccctcagcggcaagataatgctaaccgccattatcattctcttcgccgttatcataataatgctctgtctccattttctaattcgatactacctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49861580 |
ttatgccctcagcggcaagataatgctaaccgccattatcattctcttcgccgttatcataataatgctctgtctccattttctaattcgatactacctt |
49861679 |
T |
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| Q |
218 |
ctacgtgatcgcacacgtcaacacctccg |
246 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
49861680 |
ctacgtgatcgcacacgtcaacacctccg |
49861708 |
T |
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