View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18111_low_21 (Length: 272)
Name: NF18111_low_21
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18111_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 4453725 - 4453490
Alignment:
| Q |
19 |
tgtatgagaccactgcaacaatctgatgtaggtgagttggcacttccaccaagatatggaagacatgttgtaaggtctgtgagctgttctgcacattttt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4453725 |
tgtatgagaccactgcaacaatctgatgtaggtgagttggcacttccaccaagatatggaagacatgttgtaaggtctgtgagttgttctgcacattttt |
4453626 |
T |
|
| Q |
119 |
gtttctcttgtgctgattctcccatcgtatggctgatgatcaacatgaatgataatgtaaacactaccatgtatggtggactaccccttaaatccatttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4453625 |
gtttctcttgtgctgattctcccatcgtatggctgatgatcaacatgaatgataatgtaaacactaccatgtatggtggactaccccttaaatccatttt |
4453526 |
T |
|
| Q |
219 |
cagtgattgagtttaatgaatgagtggagatatcta |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4453525 |
cagtgattgagtttaatgaatgagtggagatatcta |
4453490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University