View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18111_low_22 (Length: 258)
Name: NF18111_low_22
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18111_low_22 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 32)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 4267113 - 4267341
Alignment:
| Q |
15 |
aatacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaaga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4267113 |
aatacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaaga |
4267212 |
T |
|
| Q |
115 |
agaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaatactagattgaagttat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4267213 |
ggaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaatactagattgaagtcat |
4267312 |
T |
|
| Q |
215 |
ttattctaggaattgtagttgtgtcatct |
243 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
4267313 |
ttattctaggaattgtagttgtgtaatct |
4267341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 4480877 - 4480687
Alignment:
| Q |
16 |
atacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaa |
115 |
Q |
| |
|
|||| |||||||||||||| || || |||| |||| ||||||||||| ||||||||||||||||||| | |||||||||||| | | ||||||||||||| |
|
|
| T |
4480877 |
ataccaatgtgaagagagaagatgtggagaggttaatcaatgaattgttggtgggagagaaaggaaagaagatgaagcaaaaggccatggagttgaagaa |
4480778 |
T |
|
| Q |
116 |
gaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaatactagatt |
206 |
Q |
| |
|
|| |||||| ||| |||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| ||||||||||| | |||||| |
|
|
| T |
4480777 |
gatggcagaggaggacacaagacctggtggttgttcatacatgaacttggacaaagtgattaaggaggtcttgcttaaacaaaattagatt |
4480687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 4256559 - 4256787
Alignment:
| Q |
15 |
aatacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaaga |
114 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| | |||||||||||||| |||||| |||||||| | ||||| |||||| ||| |||| ||||||| |
|
|
| T |
4256559 |
aatactaatgtgaagagagatgaggtggagaatctgatcaatgaattgatgtcgggagaaaaaggaaagaagatgaggcaaaaggtcatggaattgaaga |
4256658 |
T |
|
| Q |
115 |
agaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaatactagattgaagttat |
214 |
Q |
| |
|
||||| |||| ||||||| || || | |||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
4256659 |
agaagacagagaagaacaccagcccagctggtcattcattgatgaacttggacaaagttattaaggaggtcatgcttaaacaatactagattatagtaat |
4256758 |
T |
|
| Q |
215 |
ttattctaggaattgtagttgtgtcatct |
243 |
Q |
| |
|
|||||||| ||| ||| ||||||| |||| |
|
|
| T |
4256759 |
ttattctatgaaatgtggttgtgtaatct |
4256787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 4504383 - 4504535
Alignment:
| Q |
54 |
aatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaaggcagaagagaacacaagacctggtggtttttcat |
153 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| |||||| | | |||||||||||||||||||||| ||| ||||||||| |||||||| ||||| |
|
|
| T |
4504383 |
aatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccatggagttgaagaagaaggcagaggaggacacaagacttggtggttgttcat |
4504482 |
T |
|
| Q |
154 |
acatgaacttggataaagttattaaggaggtcatgcttaaacaatactagatt |
206 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||| |||||||| |||| |||||| |
|
|
| T |
4504483 |
acatgaacttggacaaagtgattaaggacgtcttgcttaaaaaatattagatt |
4504535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 52 - 206
Target Start/End: Complemental strand, 3171889 - 3171735
Alignment:
| Q |
52 |
tcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaaggcagaagagaacacaagacctggtggtttttc |
151 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | ||||| ||||| | | |||||||||||||||||||||| ||| | |||||| |||||||| ||| |
|
|
| T |
3171889 |
tcaacgaattgatggtgggagagaaaggaaagaagatgaggcaaagggccatggagttgaagaagaaggcagaggaggatacaagatttggtggttgttc |
3171790 |
T |
|
| Q |
152 |
atacatgaacttggataaagttattaaggaggtcatgcttaaacaatactagatt |
206 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
3171789 |
atacatgaacttggataaagtgattaaggaggtcttgcttaaacaatattagatt |
3171735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 4571156 - 4570978
Alignment:
| Q |
16 |
atacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaa |
115 |
Q |
| |
|
|||| |||||||||||| |||| || ||||| || ||||||||||||||||||||||| |||||||| | ||||| | ||||| | ||||| ||||||| |
|
|
| T |
4571156 |
atactaatgtgaagagaaatgaggtggagaatttggtcaatgaattgatggtgggagataaaggaaagaagatgaggaaaaatataatggagatgaagaa |
4571057 |
T |
|
| Q |
116 |
gaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaa |
194 |
Q |
| |
|
|||||| || ||| |||| ||||||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
4571056 |
gaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaa |
4570978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 4585815 - 4585642
Alignment:
| Q |
21 |
aatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaagg |
120 |
Q |
| |
|
|||||||||||||| || || |||||||| |||||||||||||||||||||||||| ||||| | ||||| |||||| | | |||||||||||||||| |
|
|
| T |
4585815 |
aatgtgaagagagaggaggtggagaagttggtcaatgaattgatggtgggagagaatggaaagaagatgaggcaaaaggcaatcgagttgaagaagaagg |
4585716 |
T |
|
| Q |
121 |
cagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaa |
194 |
Q |
| |
|
| || ||| |||| |||||||| |||| ||||||||| |||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
4585715 |
cggaggaggacacgagacctggaggttgttcatacataaacttggaaaaagtgattaaggaggttttgcttaaa |
4585642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 4516505 - 4516305
Alignment:
| Q |
16 |
atacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaa |
115 |
Q |
| |
|
|||| |||||||||||||| || || |||||| | |||||||||| ||||||||||| |||||||| | ||||| |||||| | | |||| |||||||| |
|
|
| T |
4516505 |
ataccaatgtgaagagagaggaggtggagaagctgatcaatgaattaatggtgggagataaaggaaagaagatgaggcaaaaggccatggaattgaagaa |
4516406 |
T |
|
| Q |
116 |
gaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaatactagattgaagttatt |
215 |
Q |
| |
|
||||||||| ||| |||||||||| ||||||| |||||| |||||||||| ||||| ||||||||||| |||| |||||| | |||||| |||| ||| |
|
|
| T |
4516405 |
gaaggcagaggaggacacaagaccaggtggttgttcatatgtgaacttggaaaaagtgattaaggaggtgctgctcaaacaaaattagattaaagtgatt |
4516306 |
T |
|
| Q |
216 |
t |
216 |
Q |
| |
|
| |
|
|
| T |
4516305 |
t |
4516305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 202
Target Start/End: Complemental strand, 4622290 - 4622140
Alignment:
| Q |
52 |
tcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaaggcagaagagaacacaagacctggtggtttttc |
151 |
Q |
| |
|
|||||||||||||| |||||| |||||||| | ||||| ||||| | | ||||||||||| |||||||||| |||| || || |||||||||| ||| |
|
|
| T |
4622290 |
tcaatgaattgatgtcgggagataaaggaaagaagatgagacaaaaggccatggagttgaaggagaaggcagatgagacgaccagccctggtggttgttc |
4622191 |
T |
|
| Q |
152 |
atacatgaacttggataaagttattaaggaggtcatgcttaaacaatacta |
202 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4622190 |
atacaacaacttggacaaagttattaaggaggtcatgcttaaacaatacta |
4622140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 4469981 - 4469809
Alignment:
| Q |
22 |
atgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaaggc |
121 |
Q |
| |
|
|||||||||||||||| || |||||| ||||||||||||||||||| |||||||| ||||| | ||||| | |||| || ||||||| |||||||||| |
|
|
| T |
4469981 |
atgtgaagagagatgaggtggagaagctagtcaatgaattgatggttggagagaatggaaagaagatgagggaaaagatcatggagttcaagaagaaggt |
4469882 |
T |
|
| Q |
122 |
agaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaa |
194 |
Q |
| |
|
|| ||| | || |||||||| ||| ||||||||| ||||||||| ||||| |||||||| ||| |||||||| |
|
|
| T |
4469881 |
ggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaa |
4469809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 4515074 - 4515250
Alignment:
| Q |
21 |
aatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaagg |
120 |
Q |
| |
|
|||||||||||||| || || || ||| | |||||||||||||||||||||||||||||||||| |||| | |||| || |||||||||| ||||||| |
|
|
| T |
4515074 |
aatgtgaagagagaggaggttgaaaagcttgtcaatgaattgatggtgggagagaaaggaaataaaatgaggaaaaaggttatggagttgaaaaagaagg |
4515173 |
T |
|
| Q |
121 |
cagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaa |
197 |
Q |
| |
|
|||| ||| |||| |||| ||| || | ||||||| |||||||||| ||||| || |||||||| ||||||||||| |
|
|
| T |
4515174 |
cagacgaggacactagacttggcgggtcttcatacttgaacttggacaaagtgatcaaggaggtgttgcttaaacaa |
4515250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 4613671 - 4613847
Alignment:
| Q |
21 |
aatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaagg |
120 |
Q |
| |
|
||||||||||||||||| || |||||| | |||||||||||||||||||||||||||||||| | |||| |||||| | | |||||||||||||||| |
|
|
| T |
4613671 |
aatgtgaagagagatgaggtagagaagctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaagg |
4613770 |
T |
|
| Q |
121 |
cagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaa |
197 |
Q |
| |
|
|||| ||| |||| ||||| || |||| |||||| ||||||||||| ||||| || || ||||| |||| |||||| |
|
|
| T |
4613771 |
cagaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgatcaatgaggtgctgctgaaacaa |
4613847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 4490339 - 4490481
Alignment:
| Q |
52 |
tcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaaggcagaagagaacacaagacctggtggtttttc |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||| |||||| | |||||||||||||||||||| ||| |||| |||| |||||| ||| |
|
|
| T |
4490339 |
tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggcgacggagttgaagaagaaggcagcggaggacacgagactcggtggtagttc |
4490438 |
T |
|
| Q |
152 |
atacatgaacttggataaagttattaaggaggtcatgcttaaa |
194 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||||||||||| |
|
|
| T |
4490439 |
atacatgaacttggacaaagtgattaaggatgtcatgcttaaa |
4490481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 4506041 - 4505851
Alignment:
| Q |
16 |
atacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaa |
115 |
Q |
| |
|
|||| |||||||| ||||| | || |||||| | ||| ||||| | ||||| |||||||||||||| | ||||| | |||| ||| |||||||||| || |
|
|
| T |
4506041 |
atactaatgtgaatagagaaaatgtagagaagctggtcgatgaaattatggttggagagaaaggaaacaagatgaggaaaaaggtcatggagttgaaaaa |
4505942 |
T |
|
| Q |
116 |
gaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaatactagatt |
206 |
Q |
| |
|
|| |||| | ||| | |||||||||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||||||| | |||||| |
|
|
| T |
4505941 |
gagggcaaaggaggatacaagacctggtggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaacaaaattagatt |
4505851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 4568240 - 4568072
Alignment:
| Q |
16 |
atacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaa |
115 |
Q |
| |
|
||||||||||||||||||| || || |||||| | | |||||||| ||||||||| |||||||||| | ||||| |||||| | | ||||||||||||| |
|
|
| T |
4568240 |
atacaaatgtgaagagagaggaggtggagaagctgatgaatgaattaatggtgggacagaaaggaaaaaagatgaggcaaaaggccgtggagttgaagaa |
4568141 |
T |
|
| Q |
116 |
gaag---gcagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaagga |
181 |
Q |
| |
|
|||| ||||| || ||||||||||||||| || |||||||||||||||||| ||||| |||||||| |
|
|
| T |
4568140 |
gaagaaggcagagaaggacacaagacctggtgattcttcatacatgaacttggacaaagtgattaagga |
4568072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 197
Target Start/End: Complemental strand, 4617170 - 4617025
Alignment:
| Q |
52 |
tcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaaggcagaagagaacacaagacctggtggtttttc |
151 |
Q |
| |
|
|||||||| |||| | ||||| |||||||| | ||||||||||| | | |||||||||||||||||||||| |||||||| ||||| ||||||| ||| |
|
|
| T |
4617170 |
tcaatgaagtgatagccggagataaaggaaagaaaatgaagcaaaaggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttc |
4617071 |
T |
|
| Q |
152 |
atacatgaacttggataaagttattaaggaggtcatgcttaaacaa |
197 |
Q |
| |
|
||||||||||||| | |||||||||||||| || ||||||||||| |
|
|
| T |
4617070 |
atacatgaacttgaacaaagttattaaggatgtgttgcttaaacaa |
4617025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 4461301 - 4461117
Alignment:
| Q |
22 |
atgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaaggc |
121 |
Q |
| |
|
|||||||||| ||||| || |||||||| ||||| ||||||||||| ||||||| ||||| | ||||| |||||| ||| |||| || |||||||||| |
|
|
| T |
4461301 |
atgtgaagagggatgaggtggagaagttggtcaacgaattgatggttggagagattggaaagaagatgaggcaaaaggtcatggaattcaagaagaaggt |
4461202 |
T |
|
| Q |
122 |
agaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaatactagatt |
206 |
Q |
| |
|
|| ||| | || |||||||| ||| ||||||||| ||||||||| ||||| |||||||| ||| ||||||||||| | |||||| |
|
|
| T |
4461201 |
ggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaacaaaattagatt |
4461117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 4557304 - 4557128
Alignment:
| Q |
21 |
aatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaagg |
120 |
Q |
| |
|
||||||||||||||||| || ||||| || |||||||||||||||| ||| ||||||||||| | |||| | |||| | | ||| |||||| ||||| |
|
|
| T |
4557304 |
aatgtgaagagagatgaggtagagaatttggtcaatgaattgatggagggggagaaaggaaagaagatgtggaaaaagataattgagatgaagacgaagg |
4557205 |
T |
|
| Q |
121 |
cagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaa |
197 |
Q |
| |
|
| || ||| |||| ||||||||||||| |||||||||||| ||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
4557204 |
cggaggaggacacgagacctggtggttgttcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaa |
4557128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 4299694 - 4299898
Alignment:
| Q |
16 |
atacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaa |
115 |
Q |
| |
|
|||||||||||| |||||| || || || ||| | ||||||||||||||||||||||||||||| ||| ||||| ||||| | |||||||||| |
|
|
| T |
4299694 |
atacaaatgtgaggagagaggaggtggaaaagctgatcaatgaattgatggtgggagagaaaggagataagatgagacaaaaggcaagggagttgaag-- |
4299791 |
T |
|
| Q |
116 |
gaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaatactagattgaagttatt |
215 |
Q |
| |
|
||||| |||||||| | || ||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||| |||| | |||| ||| |
|
|
| T |
4299792 |
----gcagaggagaacactaatccaggtggttgttcgtacatgaacttggacaaagttattaaggaggttctgcttaaacaatattagaataaagtgatt |
4299887 |
T |
|
| Q |
216 |
tattctaggaa |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
4299888 |
tattctaggaa |
4299898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 4579611 - 4579448
Alignment:
| Q |
21 |
aatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaagg |
120 |
Q |
| |
|
|||||||||||||| || || |||||| | || ||||||||||||||||||||||||| ||| | ||||| |||||| | | |||||||||||||||| |
|
|
| T |
4579611 |
aatgtgaagagagaggaggtggagaagctggttaatgaattgatggtgggagagaaagcaaagaagatgaggcaaaaggcaattgagttgaagaagaagg |
4579512 |
T |
|
| Q |
121 |
cagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggt |
184 |
Q |
| |
|
|| ||| |||| |||||||| || | |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
4579511 |
tggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggt |
4579448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 4592379 - 4592237
Alignment:
| Q |
52 |
tcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaaggcagaagagaacacaagacctggtggtttttc |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||| | |||| | | |||||||||||||||||||| |||||||| |||||||| |||| ||| |
|
|
| T |
4592379 |
tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcagaggagaacacgagacctggaggttgttc |
4592280 |
T |
|
| Q |
152 |
atacatgaacttggataaagttattaaggaggtcatgcttaaa |
194 |
Q |
| |
|
||| ||||||||||| ||| | || |||||||| |||||||| |
|
|
| T |
4592279 |
atatatgaacttggacaaattgatcaaggaggtgttgcttaaa |
4592237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 4260101 - 4260297
Alignment:
| Q |
15 |
aatacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaaga |
114 |
Q |
| |
|
||||| |||||||| |||||||| || | |||| | |||||||| | ||| ||||| ||||||| | ||||| |||||| ||| |||||||||||| |
|
|
| T |
4260101 |
aatactaatgtgaaaagagatgaggtggcgaagctgatcaatgaaattatgtcaggagaagaaggaaagaagatgaggcaaaaggtcatggagttgaaga |
4260200 |
T |
|
| Q |
115 |
agaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaatactagattgaagt |
211 |
Q |
| |
|
||||||||| |||||||| || || ||||| ||||| ||||||||||| |||||||||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
4260201 |
ggaaggcagaggagaacaccagtccatctggttattcattgatgaacttggacaaagttattaagcaggtcatgctcaaacaatactagattaaagt |
4260297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 4560690 - 4560509
Alignment:
| Q |
16 |
atacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaa |
115 |
Q |
| |
|
|||||||||| ||||| || ||||| ||||| | ||||||||||||||| |||| |||||||| | ||||| |||||| | | ||||| ||||||| |
|
|
| T |
4560690 |
atacaaatgtaaagagggaggacgtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaagatgaggcaaaaggccatggagctgaagaa |
4560591 |
T |
|
| Q |
116 |
gaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaa |
197 |
Q |
| |
|
||||| || | | |||| |||||||| |||| |||||||||||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
4560590 |
aaaggcggaggtgtacacgagacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaa |
4560509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 206
Target Start/End: Complemental strand, 4626099 - 4625945
Alignment:
| Q |
52 |
tcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaaggcagaagagaacacaagacctggtggtttttc |
151 |
Q |
| |
|
|||||| |||||||| ||||| || ||||| | ||||| |||||| | | |||||||||||||||||||||| ||||||| || || ||||||| ||| |
|
|
| T |
4626099 |
tcaatgcattgatggcaggagataacggaaagaagatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacattagtcccggtggttgttc |
4626000 |
T |
|
| Q |
152 |
atacatgaacttggataaagttattaaggaggtcatgcttaaacaatactagatt |
206 |
Q |
| |
|
||||||||| |||||||| | ||||| || ||| ||||||||||||| |||||| |
|
|
| T |
4625999 |
atacatgaatatggataaactgattaatgatgtcttgcttaaacaatattagatt |
4625945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 4392063 - 4392154
Alignment:
| Q |
105 |
gagttgaagaagaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaaca |
196 |
Q |
| |
|
|||||||||||||||||| | ||| ||||| |||||||||||| ||||| |||||||||||| ||| | |||||||||||| |||||||||| |
|
|
| T |
4392063 |
gagttgaagaagaaggcaaaggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaaaca |
4392154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 4457778 - 4457715
Alignment:
| Q |
16 |
atacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaagg |
79 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4457778 |
atacaaatgtgaagagagatgaggtggagaagttagtcaatgaattgatggtgggagaaaaagg |
4457715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 63 - 206
Target Start/End: Complemental strand, 4493092 - 4492949
Alignment:
| Q |
63 |
atggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaaggcagaagagaacacaagacctggtggtttttcatacatgaact |
162 |
Q |
| |
|
||||| |||||||||||||| | ||||| | ||| | | ||||||||| ||||||||||| ||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
4493092 |
atggttggagagaaaggaaacaagatgaggagaaaagccacggagttgaaaaagaaggcagaggaggacacagtacctggtggttgttcatacatgaact |
4492993 |
T |
|
| Q |
163 |
tggataaagttattaaggaggtcatgcttaaacaatactagatt |
206 |
Q |
| |
|
|||| ||||| || ||||| ||| ||||||||||| | |||||| |
|
|
| T |
4492992 |
tggacaaagtgatcaaggatgtcttgcttaaacaaaattagatt |
4492949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 4601973 - 4601792
Alignment:
| Q |
16 |
atacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaa |
115 |
Q |
| |
|
||||||||||||||||||| || | | |||| | |||||||| |||| | ||||| ||||| || | ||||| |||||| | | ||||||||||||| |
|
|
| T |
4601973 |
atacaaatgtgaagagagaggagttggcgaagctgatcaatgaagtgatagccggagataaaggcaagaagatgaggcaaaaggccatggagttgaagaa |
4601874 |
T |
|
| Q |
116 |
gaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaa |
197 |
Q |
| |
|
|| |||| | |||| ||| |||| ||||||| |||||||| |||| |||| ||||||||||||||||| ||||||||||| |
|
|
| T |
4601873 |
gatggcaaaggagagcactagactaggtggttgttcatacaagaacctggacaaagttattaaggaggtgttgcttaaacaa |
4601792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 4563895 - 4563714
Alignment:
| Q |
16 |
atacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaa |
115 |
Q |
| |
|
|||| ||||| |||||||| || || ||||| | ||||||||||||||| |||||||||||||| | |||| |||||| | | ||||||||||| |
|
|
| T |
4563895 |
atacgaatgtaaagagagaagaggtggagaaacttgtcaatgaattgatgtcaggagagaaaggaaagaagatgcggcaaaaggcaattgagttgaagaa |
4563796 |
T |
|
| Q |
116 |
gaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaa |
197 |
Q |
| |
|
||| | || || ||||| ||| |||| |||| |||||||||||||||||| ||||| || |||||||| ||||||||||| |
|
|
| T |
4563795 |
gaaagtggaggaaaacacgagagctggaggttgttcatacatgaacttggacaaagtgatcaaggaggttttgcttaaacaa |
4563714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 197
Target Start/End: Complemental strand, 4574457 - 4574311
Alignment:
| Q |
51 |
gtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaaggcagaagagaacacaagacctggtggttttt |
150 |
Q |
| |
|
||||||||||||||| ||||| |||||||| | ||||| |||||| | | | ||| |||||||||||| || | | |||| |||||||| |||| || |
|
|
| T |
4574457 |
gtcaatgaattgatgtccggagataaaggaaagaagatgaggcaaaaagccattgagctgaagaagaaggtggaggtggacacgagacctggaggttgtt |
4574358 |
T |
|
| Q |
151 |
catacatgaacttggataaagttattaaggaggtcatgcttaaacaa |
197 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
4574357 |
catacacaaacttggagaaagtgattaaggaggtgttgcttaaacaa |
4574311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 4606958 - 4607020
Alignment:
| Q |
135 |
agacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaa |
197 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||| |
|
|
| T |
4606958 |
agaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaa |
4607020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 4598350 - 4598187
Alignment:
| Q |
21 |
aatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaagg |
120 |
Q |
| |
|
|||||||||||||| || || |||||| | ||||| ||||||||| |||||| |||||||| | |||| |||||| | || ||||||| ||||| |
|
|
| T |
4598350 |
aatgtgaagagagaggaggtggagaagctggtcaacgaattgatgtcgggagataaaggaaagaaaatgaggcaaaagacaattgatttgaagatgaagg |
4598251 |
T |
|
| Q |
121 |
cagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggt |
184 |
Q |
| |
|
| || ||| | || |||| ||| |||| ||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
4598250 |
cggaggaggaaacgagacttggaggttgttcatacatgaacttagagaaagtgattaaggaggt |
4598187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 24103183 - 24102968
Alignment:
| Q |
16 |
atacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||||||||| ||||| |
|
|
| T |
24103183 |
atacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaacggaaagacgatgaagcaaaaggtcttggagttcaagaa |
24103084 |
T |
|
| Q |
116 |
gaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaatactagattgaagttatt |
215 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| ||| |
|
|
| T |
24103083 |
gaaggcagaagagaacacaagatctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaattctagattaaagtcatt |
24102984 |
T |
|
| Q |
216 |
tattctaggaattgta |
231 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
24102983 |
tattctaggaattgta |
24102968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 28000083 - 28000212
Alignment:
| Q |
52 |
tcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaaggcagaagagaacacaagacctggtggtttttc |
151 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | ||||| |||||| | | ||||||||||||| |||||||| |||||||| ||||| ||||||| ||| |
|
|
| T |
28000083 |
tcaatgaattgatggtgggagagaatggaaaaaagatgaggcaaaaggccatggagttgaagaaaaaggcagaggagaacactagaccaggtggttgttc |
28000182 |
T |
|
| Q |
152 |
atacatgaacttggataaagttattaagga |
181 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |
|
|
| T |
28000183 |
atacatgaacttggacaaagtgattaagga |
28000212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 3673 - 3849
Alignment:
| Q |
22 |
atgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaaggc |
121 |
Q |
| |
|
|||||||||||||||| || |||||| ||||||||||||||| |||||||||||||||||| | ||||| |||||| | | ||||||| ||||||||||| |
|
|
| T |
3673 |
atgtgaagagagatgaggtggagaagctagtcaatgaattgacggtgggagagaaaggaaagaagatgaggcaaaaggccgtggagttaaagaagaaggc |
3772 |
T |
|
| Q |
122 |
agaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaat |
198 |
Q |
| |
|
||| |||||||| ||||| |||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||| |
|
|
| T |
3773 |
agaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaat |
3849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 3086604 - 3086421
Alignment:
| Q |
16 |
atacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaa |
115 |
Q |
| |
|
|||| |||||||||||||| || ||||||||| | |||||||||||||||||||||| |||||||| | ||||| |||||||||| ||||| ||||| |
|
|
| T |
3086604 |
atactaatgtgaagagagaggaggtcgagaagctgatcaatgaattgatggtgggagataaaggaaagaagatgaggcaaaatgtcgcagagttaaagaa |
3086505 |
T |
|
| Q |
116 |
gaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaata |
199 |
Q |
| |
|
||| |||||||||||||| || ||||||| |||||||||||||||||| |||||||||||||||||| |||||||| |||| |
|
|
| T |
3086504 |
gaaagcagaagagaacaccagtatcggtggttgttcatacatgaacttggacaaagttattaaggaggtcttgcttaaaaaata |
3086421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 4670 - 4840
Alignment:
| Q |
52 |
tcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaaggcagaagagaacacaagacctggtggtttttc |
151 |
Q |
| |
|
|||||||||||||| |||||| ||||||| | ||||| |||||| | | |||||||||||||||||||||| |||||||| || ||||||| | ||| |
|
|
| T |
4670 |
tcaatgaattgatgtcgggagataaaggaatgaagatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacaccagttctggtggctgttc |
4769 |
T |
|
| Q |
152 |
atacatgaacttggataaagttattaaggaggtcatgcttaaacaatactagattgaagttatttattcta |
222 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
4770 |
atacatgaacttggacaaagtgattaaggaggtcatgcttaaacaatgctagattaaagttatatattcta |
4840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 52 - 197
Target Start/End: Complemental strand, 1674374 - 1674229
Alignment:
| Q |
52 |
tcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaaggcagaagagaacacaagacctggtggtttttc |
151 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | ||||| |||||| | | |||| ||||||||||||||||| |||||||| ||||| ||||||| ||| |
|
|
| T |
1674374 |
tcaatgaattgatggtgggagagaatggaaaaaagatgaggcaaaaggccatggaattgaagaagaaggcagaggagaacactagaccaggtggttgttc |
1674275 |
T |
|
| Q |
152 |
atacatgaacttggataaagttattaaggaggtcatgcttaaacaa |
197 |
Q |
| |
|
||||||||||||||| ||||| |||||||| || ||||||||||| |
|
|
| T |
1674274 |
atacatgaacttggacaaagtgattaaggaagtgttgcttaaacaa |
1674229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 16686220 - 16686396
Alignment:
| Q |
21 |
aatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaagg |
120 |
Q |
| |
|
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||| | ||||| | |||| | | || || | | ||||| |
|
|
| T |
16686220 |
aatgtgaagagagatgaggtggagaaattggtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaagataattgaactgcaaatgaagg |
16686319 |
T |
|
| Q |
121 |
cagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaa |
197 |
Q |
| |
|
|| || || | ||||||||||||| |||||||||||||||||| ||||| |||| |||||| ||||||||||| |
|
|
| T |
16686320 |
tggacgaagacccgagacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaa |
16686396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 20863796 - 20863972
Alignment:
| Q |
21 |
aatgtgaagagagatgacgtcgagaagttagtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaagaagg |
120 |
Q |
| |
|
||||| |||||||| || || |||| | | || |||||||||||||||||||||||||||| | ||||| |||||| |||||||||||||||| |
|
|
| T |
20863796 |
aatgtcaagagagaggaggtggagatgctggtaaatgaattgatggtgggagagaaaggaaggaggatgaggcaaaagacaaatgagttgaagaagaagg |
20863895 |
T |
|
| Q |
121 |
cagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaa |
197 |
Q |
| |
|
|||| ||| |||||||||| | ||| |||||| ||||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
20863896 |
cagaggaggacacaagaccggaaggtggttcatatatgaacttggacaaagtgattaaggaggtgttgcttaaacaa |
20863972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 1281211 - 1281117
Alignment:
| Q |
103 |
tggagttgaagaagaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggataaagttattaaggaggtcatgcttaaacaa |
197 |
Q |
| |
|
|||| ||||||||| ||| || |||||||| ||||| ||||||| ||||||||||||||| || ||||| |||||||| | ||||||||||| |
|
|
| T |
1281211 |
tggaattgaagaaggcggcggaggagaacactagaccgggtggttgttcatacatgaacttcgacaaagtgattaaggaaatgttgcttaaacaa |
1281117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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