View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18111_low_23 (Length: 250)
Name: NF18111_low_23
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18111_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 4453762 - 4453850
Alignment:
| Q |
1 |
tattaaagacagagatgaccctgacctaggtttaaagattaacattactcttgctcttggacttccttctctttgcaatacaccagata |
89 |
Q |
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| T |
4453762 |
tattaaagacagagatgaccctgacctaggtttaaagattaacattactcttgctcttggacttccttctctttgcaatacaccagata |
4453850 |
T |
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Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 4453916 - 4454000
Alignment:
| Q |
155 |
atcaaagaatttaaatagtgccgtgccatggtacgtacatttcctatataatggtcaacataccctgtcttgaaattgccttctt |
239 |
Q |
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| T |
4453916 |
atcaaagaatttaaatagtgccgtgccatggtacgtacatttcctatataatggtcaacataccctgtcttgaaattgccttctt |
4454000 |
T |
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