View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18111_low_4 (Length: 477)
Name: NF18111_low_4
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18111_low_4 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 5 - 391
Target Start/End: Original strand, 4917361 - 4917747
Alignment:
| Q |
5 |
atgaagctgttcaaaattttctcaacttaagttttcatgagacgaaggagccaatcaatgtaagctatagtttatcattatcatcagggaaaatcattac |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4917361 |
atgaagctgttcaaaattttctcaacttaagttttcatgagacaaaggagccaatcaatgtaagctatagtttatcattatcatcagggaaaatcattac |
4917460 |
T |
|
| Q |
105 |
caagaaagccaacaaaagggtgcgttgggagagccaaagctgcaagtttataatccaaaagatggatggagctcctgatgaaatattgaaatatgctaca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4917461 |
caagaaagccaacaaaagggtgcgttgggagagtcaaagctgcaagtttataatccaaaagatggatggagctcctgatgaaatattgaaatatgctaca |
4917560 |
T |
|
| Q |
205 |
tatttttctgaagcaatatctgagggtgttttgcgtgagaatcacgatcatgttcctgcactcactaatctaatcacaacgggtttctttctgaaattta |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
4917561 |
tatttttctgaagcaatatctgagggtgttttgcgtgagaatcacgatcatgttcctgcactcactgatctaatcacaacgggtttctttctgaaattta |
4917660 |
T |
|
| Q |
305 |
agaatgaagaaattgattttctaatggaatccaagaatctgcagattgagcatgaagatgaggagtttctcagttctgctttccctt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4917661 |
agaatgaagaaattgattttctaatggaatccaagaatctgcagattgagcatgaagatgaggagtttctcagttctgctttccctt |
4917747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 391
Target Start/End: Original strand, 3013682 - 3014066
Alignment:
| Q |
7 |
gaagctgttcaaaattttctcaacttaagttttcatgagacgaaggagccaatcaatgtaagctatagtttatcattatcatcagggaaaatcattacca |
106 |
Q |
| |
|
||||||||||||| | || ||||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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|
| T |
3013682 |
gaagctgttcaaagtcttatcaacttgagtttccatgagacaacagagccaatcaatgtaagctatagtttatcattatcatcaggggacatcattacca |
3013781 |
T |
|
| Q |
107 |
agaaagccaacaaaagggtgcgttgggagagccaaagctgcaagtttataatccaaaagatggatggagctcctgatgaaatattgaaatatgctacata |
206 |
Q |
| |
|
||||| | ||||||||||| |||||||| || ||||| ||||||||||| ||||| ||||||||||||| || || ||| |||||| ||||||||| | |
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|
| T |
3013782 |
agaaatcaaacaaaagggtacgttgggaaagtcaaagttgcaagtttatcatccagaagatggatggagttcttggtgattcattgaagtatgctacaaa |
3013881 |
T |
|
| Q |
207 |
tttttctgaagcaatatctgagggtgttttgcgtgagaatcacgatcatgttcctgcactcactaatctaatcacaacgggtttctttctgaaatttaag |
306 |
Q |
| |
|
||| |||||||||||||| |||||| |||||||||||||||| ||| || |||||||||| | | ||||||||| |||||| | ||||||| ||| |
|
|
| T |
3013882 |
tttctctgaagcaatatccgagggtattttgcgtgagaatcatgatgatattcctgcactggccgaactaatcacattgggttttgtgatgaaattcaag |
3013981 |
T |
|
| Q |
307 |
aatgaagaaattgattttctaatggaatccaagaatctgcagattgagcatgaagatgaggagtttctcagttctgctttccctt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
3013982 |
aatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagtttctcagttctgccttccctt |
3014066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 5 - 404
Target Start/End: Complemental strand, 2929102 - 2928703
Alignment:
| Q |
5 |
atgaagctgttcaaaattttctcaacttaagttttcatgagacgaaggagccaatcaatgtaagctatagtttatcattatcatcagggaaaatcattac |
104 |
Q |
| |
|
||||||||||||||| | || |||||| ||||| |||||||| | ||||| |||||||||||||||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
2929102 |
atgaagctgttcaaagtcttatcaactcgagtttccatgagacaacagagccgatcaatgtaagctatagtttgtcattgtcatcaggggaaatcattac |
2929003 |
T |
|
| Q |
105 |
caagaaagccaacaaaagggtgcgttgggagagccaaagctgcaagtttataatccaaaagatggatggagctcctgatgaaatattgaaatatgctaca |
204 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||||||||||||||||| ||||| |||||||| | || ||||| ||| ||||| || ||||||| |
|
|
| T |
2929002 |
aaagaaagcaaacaaaagggtacgttgggaaagtcaaagctgcaagtttatcatccagaagatggaggaagttcctggtgatgcattgagatgtgctaca |
2928903 |
T |
|
| Q |
205 |
tatttttctgaagcaatatctgagggtgttttgcgtgagaatcacgatcatgttcctgcactcactaatctaatcacaacgggtttctttctgaaattta |
304 |
Q |
| |
|
||| |||||||||||||| |||||| |||||||||||||||| ||||||||| |||||||| | | ||||||||| || || |||||||||||| |
|
|
| T |
2928902 |
agtttctctgaagcaatatccgagggtattttgcgtgagaatcatgatcatgttgctgcactctcggaactaatcacactaggctttgttctgaaattta |
2928803 |
T |
|
| Q |
305 |
agaatgaagaaattgattttctaatggaatccaagaatctgcagattgagcatgaagatgaggagtttctcagttctgctttcccttctggctaagtcta |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||| ||||||||||| ||||||| || ||||||||| |
|
|
| T |
2928802 |
agaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagttcctcagttctgccttcccttttgactaagtcta |
2928703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 5 - 401
Target Start/End: Complemental strand, 2945743 - 2945347
Alignment:
| Q |
5 |
atgaagctgttcaaaattttctcaacttaagttttcatgagacgaaggagccaatcaatgtaagctatagtttatcattatcatcagggaaaatcattac |
104 |
Q |
| |
|
||||||||||||||| | || |||||| ||||| |||||||| | || || |||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
2945743 |
atgaagctgttcaaagtcttgtcaactcgagtttccatgagacaacagaaccgatcaatgtaagctatagtttatcattatcatcgggggaaatcattac |
2945644 |
T |
|
| Q |
105 |
caagaaagccaacaaaagggtgcgttgggagagccaaagctgcaagtttataatccaaaagatggatggagctcctgatgaaatattgaaatatgctaca |
204 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || |||||||| |||||||| ||||| ||||| || | || ||| | ||| ||||| ||||||||| |
|
|
| T |
2945643 |
aaagaaagcaaacaaaagggtacgttgggaaagtcaaagctgtaagtttatcatccagaagattgaggaagttcccggtgattctttgaattatgctaca |
2945544 |
T |
|
| Q |
205 |
tatttttctgaagcaatatctgagggtgttttgcgtgagaatcacgatcatgttcctgcactcactaatctaatcacaacgggtttctttctgaaattta |
304 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||| ||||||||| ||| ||||||||||||| || | ||||||||| ||||| | ||||||| | |
|
|
| T |
2945543 |
aatttctctgaagcaatatccgagggtattttgcctgagaatcatgattatgttcctgcactggctgaactaatcacattgggttatgtgatgaaattca |
2945444 |
T |
|
| Q |
305 |
agaatgaagaaattgattttctaatggaatccaagaatctgcagattgagcatgaagatgaggagtttctcagttctgctttcccttctggctaagt |
401 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||| |||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
2945443 |
agaatgaagaaattgattttctcatggaatcgaagaatttgcagattgaacatgcagatgaggagttcctcagttctgtgttcccttctggctaagt |
2945347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 191 - 401
Target Start/End: Complemental strand, 2919414 - 2919204
Alignment:
| Q |
191 |
tgaaatatgctacatatttttctgaagcaatatctgagggtgttttgcgtgagaatcacgatcatgttcctgcactcactaatctaatcacaacgggttt |
290 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| || ||||||||| |||||||||| |||| ||||||||| ||| || | || |||||| |||||| |
|
|
| T |
2919414 |
tgaaatatgccacatatttctctgaagcaatatcagaaggtgttttgtgtgagaatcatgatcttgttcctgctctctctgaactgatcacattgggttt |
2919315 |
T |
|
| Q |
291 |
ctttctgaaatttaagaatgaagaaattgattttctaatggaatccaagaatctgcagattgagcatgaagatgaggagtttctcagttctgctttccct |
390 |
Q |
| |
|
| |||||||| ||||||||||| ||||| ||||| ||||| ||||||||| | |||||| ||| |||||| |||| ||||||||| | |||||| |
|
|
| T |
2919314 |
tatgctgaaattcaagaatgaagatattgaatttctcatggagtccaagaatttacagattttctttgaggatgagaagttcctcagttcttccttccct |
2919215 |
T |
|
| Q |
391 |
tctggctaagt |
401 |
Q |
| |
|
|||| |||||| |
|
|
| T |
2919214 |
tctgactaagt |
2919204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 394
Target Start/End: Complemental strand, 37794471 - 37794082
Alignment:
| Q |
5 |
atgaagctgttcaaaattttctcaacttaagttttcatgagacgaaggagccaatcaatgtaagctatagtttatcattatcatcagggaaaatcattac |
104 |
Q |
| |
|
|||||||||||||| | |||||||| | ||||| | |||||| |||| || ||| |||||||||| | ||||| | ||||||||| | |||||||| |
|
|
| T |
37794471 |
atgaagctgttcaaggtcttctcaacctgagtttccttgagacaaaggtcccggtcacggtaagctataatctatcactgtcatcaggggacatcattac |
37794372 |
T |
|
| Q |
105 |
caagaaagccaacaaaagggtgcgttgggagagccaaagctgcaagtttataatccaaaagatggatggagctcctgatgaaat--attgaaatatgcta |
202 |
Q |
| |
|
||||||| |||||| ||| || ||||| || ||||| | ||||||| | ||||| ||| |||||| ||| | ||||| | |||||||||| | |
|
|
| T |
37794371 |
aaagaaagatgacaaaatggtacgctgggaaaggcaaagttccaagtttttcatccagaagttggatgagcctcggg--gaaatgcactgaaatatgcga |
37794274 |
T |
|
| Q |
203 |
catatttttctgaagcaatatctgagggtgttttgcgtgagaatcacgatcatgttcctgcactcactaatctaatcacaacgggtttctttctgaaatt |
302 |
Q |
| |
|
||||||| |||||| ||||||| || ||||||||| ||||||||| ||| ||||||||| || || | | |||||| |||||| | |||||||| |
|
|
| T |
37794273 |
catatttctctgaaacaatatcagaaggtgttttgtctgagaatcatgattttgttcctgccctatctgaattgatcacattgggttttgtgctgaaatt |
37794174 |
T |
|
| Q |
303 |
taagaatgaagaaattgattttctaatggaatccaagaatctgcagattgagcatgaagatgaggagtttctcagttctgctttcccttctg |
394 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||| || |||||||| ||||||||| || | ||||||||||| |||||||||| |
|
|
| T |
37794173 |
caagaatgaagatattgaatttctgatggaatccaaaaacatgcagattttctgggaagatgagaagctcctcagttctgccttcccttctg |
37794082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 2941880 - 2941831
Alignment:
| Q |
221 |
tatctgagggtgttttgcgtgagaatcacgatcatgttcctgcactcact |
270 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2941880 |
tatctgagggtgttttgcgtgagaatcatgatcatgttcctgcactcact |
2941831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 5 - 403
Target Start/End: Original strand, 1508013 - 1508405
Alignment:
| Q |
5 |
atgaagctgttcaaaattttctcaacttaagttttcatgagacgaaggagccaatcaatgtaagctatagtttatcattatcatcagggaaaatcattac |
104 |
Q |
| |
|
||||||||||||||| | ||||||||||||| || |||||||| | ||| ||||||||||||||||||||| | || ||||||| || | |||||||| |
|
|
| T |
1508013 |
atgaagctgttcaaactcttctcaacttaagcttccatgagacaatggaaccaatcaatgtaagctatagtctgccactatcatccggagacatcattac |
1508112 |
T |
|
| Q |
105 |
caagaaagccaacaaaagggtgcgttgggagagccaaagctgcaagtttataatccaaaagatggatggagctcctgatgaaatattgaaatatgctaca |
204 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||| | ||||||||| ||||| ||||||||||| ||| || ||||||||||| |||| |
|
|
| T |
1508113 |
aaagaaagcaaacaaaagggtgcgttgggaaagtcaaagttccaagtttatcatccagaagatggatgg------tgaggattcattgaaatatgttaca |
1508206 |
T |
|
| Q |
205 |
tatttttctgaagcaatatctgagggtgttttgcgtgagaatcacgatcatgttcctgcactcactaatctaatcacaacgggtttctttctgaaattta |
304 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| |||| ||||||||| || || ||||||||||| | |
|
|
| T |
1508207 |
aatttctctgaagcaatatctgagggtgttttgcatgaaaatcatgatcatgttcctgcactatctaaactaatcacattagggttttttctgaaattca |
1508306 |
T |
|
| Q |
305 |
agaatgaagaaattgattttctaatggaatccaagaatctgcagattgagcatgaagatgaggagtttctcagttctgctttcccttctggctaagtct |
403 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||| |||| || | ||| |||||| |||| ||||||||||| ||||||||| |||||||| |
|
|
| T |
1508307 |
agaatgaagaaattgattttcttatggaatccaagtatctggagatcgaccctgaggatgagaagttcctcagttctgccttcccttctaactaagtct |
1508405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 191 - 338
Target Start/End: Complemental strand, 28023298 - 28023151
Alignment:
| Q |
191 |
tgaaatatgctacatatttttctgaagcaatatctgagggtgttttgcgtgagaatcacgatcatgttcctgcactcactaatctaatcacaacgggttt |
290 |
Q |
| |
|
|||||||||| |||||| | |||||| ||||||| || ||||||||| ||||||||||||| ||||||||| ||| || | | |||||| |||||| |
|
|
| T |
28023298 |
tgaaatatgccacatatgtctctgaaacaatatcagaaggtgttttgtctgagaatcacgattttgttcctgccctctctgaattgatcacattgggttt |
28023199 |
T |
|
| Q |
291 |
ctttctgaaatttaagaatgaagaaattgattttctaatggaatccaa |
338 |
Q |
| |
|
| |||||||| ||||||||||| ||||| || || ||||||||||| |
|
|
| T |
28023198 |
tgtgctgaaattcaagaatgaagatattgaattcctgatggaatccaa |
28023151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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