View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18111_low_7 (Length: 438)

Name: NF18111_low_7
Description: NF18111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18111_low_7
NF18111_low_7
[»] chr4 (11 HSPs)
chr4 (15-420)||(7615597-7616002)
chr4 (16-420)||(7606584-7607006)
chr4 (195-420)||(7637612-7637837)
chr4 (195-420)||(7629166-7629391)
chr4 (15-179)||(7637414-7637578)
chr4 (196-420)||(7655489-7655710)
chr4 (15-171)||(7628968-7629124)
chr4 (22-176)||(7655748-7655902)
chr4 (289-420)||(39098306-39098437)
chr4 (24-63)||(39098047-39098086)
chr4 (21-77)||(7633703-7633759)
[»] chr7 (5 HSPs)
chr7 (15-420)||(8935450-8935873)
chr7 (30-410)||(8910525-8910919)
chr7 (254-420)||(8934509-8934675)
chr7 (263-413)||(8930061-8930211)
chr7 (21-119)||(8918826-8918924)
[»] chr3 (2 HSPs)
chr3 (199-420)||(8103025-8103246)
chr3 (196-420)||(40146738-40146959)
[»] chr8 (1 HSPs)
chr8 (196-314)||(15190642-15190757)
[»] chr6 (2 HSPs)
chr6 (197-319)||(6501058-6501176)
chr6 (289-317)||(11969547-11969575)


Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Original strand, 7615597 - 7616002
Alignment:
Q  15 cacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615597 cacagagcaccaaaggtgagttaaaagcacttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 7615696  T
Q  115 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaattcatcaccgtaaacgaaaggaaatcgtatgggct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615697 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaattcatcaccgtaaacgaaaggaaatcgtatgggct 7615796  T
Q  215 gttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttcagcccatgaattgatgaaatg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615797 gttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttcagcccatgaattgatgaaatg 7615896  T
Q  315 ccacacagactctccgtcaacgacaacatggttgaacgagcaaccaataaaaataccgtcaactagctccgttacttgaactgccaacaacggttttgag 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615897 ccacacagactctccgtcaacgacaacatggttgaacgagcaaccaataaaaataccgtcaactagctccgttacttgaactgccaacaacggttttgag 7615996  T
Q  415 gtgcct 420  Q
    ||||||    
T  7615997 gtgcct 7616002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 420
Target Start/End: Original strand, 7606584 - 7607006
Alignment:
Q  16 acagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctctt 115  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |||||||  |||||||| |    
T  7606584 acagagcaccaaaggtgagttaaaagcgcttgtagagaagttattttgatggtaccaacctcttcattgattttcgatttcagttgtatgattttctcct 7606683  T
Q  116 ttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaattcatcaccgtaaac------------------gaa 197  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || |                    |||    
T  7606684 ttgtgaaatgaaataacctatttgataaacaaagtttttcctcattagacgatgaaaaactcaactcatcacagtgattattttgttgctccgtagtgaa 7606783  T
Q  198 aggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttcagcc 297  Q
    |||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||| |||||||||| |  ||||||||  |||||||||||||||    
T  7606784 aggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttgggggtttggatatttgatcaccacaacaaccgcgtgatatttcagcc 7606883  T
Q  298 catgaattgatgaaatgccacacagactctccgtcaacgacaacatggttgaacgagcaaccaataaaaataccgtcaactagctccgttacttgaactg 397  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |    
T  7606884 catgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaaggagcaaccaatgaaaataccgtcaactagctccgttatttgaacag 7606983  T
Q  398 ccaacaacggttttgaggtgcct 420  Q
    ||||||| |||||||| ||||||    
T  7606984 ccaacaatggttttgacgtgcct 7607006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 195 - 420
Target Start/End: Original strand, 7637612 - 7637837
Alignment:
Q  195 gaaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttca 294  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7637612 gaaaggaaatcgtataggccgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgagatttca 7637711  T
Q  295 gcccatgaattgatgaaatgccacacagactctccgtcaacgacaacatggttgaacgagcaaccaataaaaataccgtcaactagctccgttacttgaa 394  Q
    ||||| |||||||||||||||||||| |||| ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||    
T  7637712 gcccaggaattgatgaaatgccacacggactttccgtcaacgacaacatggttaaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaa 7637811  T
Q  395 ctgccaacaacggttttgaggtgcct 420  Q
    |||||||||| |||||||| ||||||    
T  7637812 ctgccaacaatggttttgatgtgcct 7637837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 195 - 420
Target Start/End: Original strand, 7629166 - 7629391
Alignment:
Q  195 gaaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttca 294  Q
    ||||||||||||||||||  |||||| |||||||||||||||||| ||   |||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  7629166 gaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgttcagatgttggaggtttagatatttgatgatgacaacaactacgtgagatttca 7629265  T
Q  295 gcccatgaattgatgaaatgccacacagactctccgtcaacgacaacatggttgaacgagcaaccaataaaaataccgtcaactagctccgttacttgaa 394  Q
    |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| | |||||||||||| | ||||||||||||||||||||||||||    
T  7629266 gcccatgaattgatgaaatgccacacggactttccgtcaacaacaacatggttgaatgtgcaaccaataaagacaccgtcaactagctccgttacttgaa 7629365  T
Q  395 ctgccaacaacggttttgaggtgcct 420  Q
    | |||||||| |||||||| ||||||    
T  7629366 cagccaacaatggttttgacgtgcct 7629391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 7637414 - 7637578
Alignment:
Q  15 cacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 114  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||||||| |||| || ||||| || |||||||||||||| | |||||  ||||||||     
T  7637414 cacatagcaccaaacgtgagttaaaagtgcttgtagagaagatattttggtggtgccgatctcttcgttgattttcgatttcaattgtaggattttctcc 7637513  T
Q  115 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaa 179  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||| |||| |||||||||||    
T  7637514 tttgtgaaatgaaataacctatttgataaacaatatttttcctcattaaacgatgaaaaactcaa 7637578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 196 - 420
Target Start/End: Complemental strand, 7655710 - 7655489
Alignment:
Q  196 aaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttcag 295  Q
    |||||||||||||| ||  ||||||  |||||||||||||||||||| || |||||||  ||||||||||||||||||   |||| |||||| |||||||    
T  7655710 aaaggaaatcgtataggtcgttgaattccatttggaaaccaacgctccagcgttggggagttagatatttgatgatga---caaccacgtgacatttcag 7655614  T
Q  296 cccatgaattgatgaaatgccacacagactctccgtcaacgacaacatggttgaacgagcaaccaataaaaataccgtcaactagctccgttacttgaac 395  Q
    |||| ||||||||||||||||||   |||| ||||||| | || |||||||||||     | ||||| || || ||||||||||||||||| ||||||||    
T  7655613 cccacgaattgatgaaatgccacgtggactgtccgtcagctacgacatggttgaaattaaagccaatgaagatgccgtcaactagctccgtgacttgaac 7655514  T
Q  396 tgccaacaacggttttgaggtgcct 420  Q
     |||||||| |||||||| ||||||    
T  7655513 agccaacaatggttttgatgtgcct 7655489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 7628968 - 7629124
Alignment:
Q  15 cacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 114  Q
    |||| |||||||||  ||||||| |||||||||||||||||||||||||||| |||||||||| |  |||||||| ||||| ||||| || ||||||||     
T  7628968 cacatagcaccaaacatgagttagaagcgcttgtagagaagatattttgatgttaccaatctctttgttgatttttgatttcagttgcacgattttctcc 7629067  T
Q  115 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaa 171  Q
    ||||| || || ||||  ||||||||||||||||||||||| |||||||| ||||||    
T  7629068 tttgtaaagtggaataatctatttgataaacaaagtttttcatcattagatgacgaa 7629124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 7655902 - 7655748
Alignment:
Q  22 caccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtga 121  Q
    |||||||| ||||||||||||||||||||||||||||||||  ||||| |||||||  |||||| ||||||||| ||||| |  |||||||  ||||| |    
T  7655902 caccaaagatgagttaaaagcgcttgtagagaagatatttttttggtatcaatctctgcattgactttcgatttcagttgcatgattttcttctttgtaa 7655803  T
Q  122 aatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaact 176  Q
    | ||||||||||| | ||||| | | |||||||| |||| ||| |||||||||||    
T  7655802 agtgaaatatcctctctgatagaaagagtttttcgtcatcagaagacgaaaaact 7655748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 420
Target Start/End: Original strand, 39098306 - 39098437
Alignment:
Q  289 atttcagcccatgaattgatgaaatgccacacagactctccgtcaacgacaacatggttgaacgagcaaccaataaaaataccgtcaactagctccgtta 388  Q
    ||||||| ||||||||||||||||||||| |  ||||  || || || |||||||| ||||  ||| | ||||| |||||||| ||||| ||||| || |    
T  39098306 atttcagaccatgaattgatgaaatgccaaaacgacttaccatcgacaacaacatgattgattgagaagccaatgaaaataccatcaacaagctcagtaa 39098405  T
Q  389 cttgaactgccaacaacggttttgaggtgcct 420  Q
    |||||||||| | ||| |||||||| ||||||    
T  39098406 cttgaactgcaagcaatggttttgatgtgcct 39098437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 39098047 - 39098086
Alignment:
Q  24 ccaaaggtgagttaaaagcgcttgtagagaagatattttg 63  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  39098047 ccaaaggtgagttaaaagtgcttgtaaagaagatattttg 39098086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 7633703 - 7633759
Alignment:
Q  21 gcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctc 77  Q
    |||||||||||||| ||||||||| | |||  || ||||||||| ||||||||||||    
T  7633703 gcaccaaaggtgagctaaaagcgcatataggaaatatattttgacggtaccaatctc 7633759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 15 - 420
Target Start/End: Complemental strand, 8935873 - 8935450
Alignment:
Q  15 cacagagcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctct 114  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||  |||| || ||||| |||||||||    
T  8935873 cacacagcaccaaaggtgagttaaaggcgcttgtagagaagatattttgatggtaccaatctcttcattgatttttaatttcagctgtacgattttctct 8935774  T
Q  115 tttgtgaaatgaaatatcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaattcatcaccgt------------------aaacga 196  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||||   ||||| ||||||||||  |||||  ||                  ||  ||    
T  8935773 tttgtgaaatgaaatattctatttgagaaacaaagtttttcatcatctaacgacaaaaaactcaacccatcagagtgattcttttgttgctccaaagtga 8935674  T
Q  197 aaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttcagc 296  Q
    ||||||||||||| ||| ||||||||||||  ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  8935673 aaggaaatcgtattggccgttgaacaccatccggaaaccaacgttctagtgttggaggtttagatatttgatgatgacaacaactacgtgagatttcagc 8935574  T
Q  297 ccatgaattgatgaaatgccacacagactctccgtcaacgacaacatggttgaacgagcaaccaataaaaataccgtcaactagctccgttacttgaact 396  Q
    ||| ||||||||||||||||||||||||| |||||||| |||| | ||||| || ||||||||||| ||||||||||||| || ||| ||||||||||||    
T  8935573 ccaagaattgatgaaatgccacacagactttccgtcaatgacagcgtggttaaatgagcaaccaatgaaaataccgtcaattaactcagttacttgaact 8935474  T
Q  397 gccaacaacggttttgaggtgcct 420  Q
    |||||||| |||||||| ||||||    
T  8935473 gccaacaatggttttgatgtgcct 8935450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 30 - 410
Target Start/End: Complemental strand, 8910919 - 8910525
Alignment:
Q  30 gtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgtgaaatgaaat 129  Q
    |||||||||||| ||||||||||||||||||||| |||| || ||||| || |||||||||||||| | |||||  |||||||| |||||||||||||||    
T  8910919 gtgagttaaaagtgcttgtagagaagatattttggtggtgccgatctcttcgttgattttcgatttcaattgtaggattttctcctttgtgaaatgaaat 8910820  T
Q  130 atcctatttgataaacaaagtttttcctcattagacgacgaaaaactcaattcatcaccgtaaac------------------gaaaggaaatcgtatgg 211  Q
    | |||||||||||||||| ||||||||||||||  ||| |||||||||||  |||||  || | |                  ||||||||||||||| |    
T  8910819 aacctatttgataaacaatgtttttcctcattaagcgatgaaaaactcaacccatcagagtgatccttttgttgctccaaagtgaaaggaaatcgtatag 8910720  T
Q  212 gctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttcagcccatgaattgatgaa 311  Q
    || |||||||    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| |||||    
T  8910719 gccgttgaac----tttggaaaccaacgctctagtgttgggggtttagatatttgataatgacaacaactacgtgagatttcagcccaggaattaatgaa 8910624  T
Q  312 atgccacacagactctccgtcaacgacaacatggttgaacgagcaaccaataaaaataccgtcaactagctccgttacttgaactgccaacaacggttt 410  Q
    ||||||||| |||| ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  8910623 atgccacacggactttccgtcaacgacaacatggttaaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttt 8910525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 254 - 420
Target Start/End: Complemental strand, 8934675 - 8934509
Alignment:
Q  254 gtttagatatttgatgatgacaacaactacgtgatatttcagcccatgaattgatgaaatgccacacagactctccgtcaacgacaacatggttgaacga 353  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||||| || ||    
T  8934675 gtttaaatatttgatgatgacaacaactacgtgagatttcagcccatgaattgatgaaatgccacacagactttccgtcaatgacagcgtggttaaatga 8934576  T
Q  354 gcaaccaataaaaataccgtcaactagctccgttacttgaactgccaacaacggttttgaggtgcct 420  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||| |||||||| ||||||    
T  8934575 gcaaccaatgaaaataccgtcaattaactccgttacttgaactgccaacaatggttttgatgtgcct 8934509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 263 - 413
Target Start/End: Complemental strand, 8930211 - 8930061
Alignment:
Q  263 tttgatgatgacaacaactacgtgatatttcagcccatgaattgatgaaatgccacacagactctccgtcaacgacaacatggttgaacgagcaaccaat 362  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||| |||| | ||||| || |||||||||||    
T  8930211 tttgatgatgacaacaactacgtgagatttcagcccatgaattgatgaaatgtcacacagactttccatcaatgacagcgtggttaaatgagcaaccaat 8930112  T
Q  363 aaaaataccgtcaactagctccgttacttgaactgccaacaacggttttga 413  Q
     ||||||||||||| || ||| |||||||||| ||||||||| ||||||||    
T  8930111 gaaaataccgtcaattaactcagttacttgaaatgccaacaatggttttga 8930061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 8918924 - 8918826
Alignment:
Q  21 gcaccaaaggtgagttaaaagcgcttgtagagaagatattttgatggtaccaatctcatcattgattttcgattttagttgtacaattttctcttttgt 119  Q
    |||||||||||||| ||||||||| | |||  || ||||||||| ||||||||||||    |||| ||| ||||| |||||||  |||||||| |||||    
T  8918924 gcaccaaaggtgagctaaaagcgcatataggaaatatattttgacggtaccaatctctgtgttgacttttgatttcagttgtaagattttctcctttgt 8918826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 420
Target Start/End: Original strand, 8103025 - 8103246
Alignment:
Q  199 ggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttcagccc 298  Q
    ||||||||||||||   ||||| ||||| |||||||||||| || ||||||| | |||| ||| ||||||    ||||| || |||||| ||||||||||    
T  8103025 ggaaatcgtatgggacattgaataccatctggaaaccaacgttcaagtgttgagagtttggatgtttgattgcaacaaccaccacgtgagatttcagccc 8103124  T
Q  299 atgaattgatgaaatgccacacagactctccgtcaacgacaacatggttgaacgagcaaccaataaaaataccgtcaactagctccgttacttgaactgc 398  Q
    | ||||| ||||||| |||  | ||   ||| ||||| || |||||||| || |   |||||||||| || |||||||||| ||| || ||||| || ||    
T  8103125 acgaattaatgaaataccatgccgaagttccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaactaactctgtcacttgcacggc 8103224  T
Q  399 caacaacggttttgaggtgcct 420  Q
     ||||| |||| ||| ||||||    
T  8103225 aaacaatggttgtgatgtgcct 8103246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 420
Target Start/End: Complemental strand, 40146959 - 40146738
Alignment:
Q  196 aaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttcag 295  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||| ||||| |||  | |||| |||| |||||  || ||||||| ||| || ||||  |    
T  40146959 aaaggaaatcgtatgggatgttgaataccacttggaaaccaacgttctagcgttatgagtttggatacttgat--tg-caacaaccacgcgagattttcg 40146863  T
Q  296 cccatgaattgatgaaatgccacacagactctccgtcaacgacaacatggttgaacgagcaaccaataaaaataccgtcaactagctccgttacttgaac 395  Q
    |||||||||| |||||| ||||    |||||||||||||| ||  ||||||| || |   ||||||| || |  |||||||||| ||| || ||||| ||    
T  40146862 cccatgaattaatgaaaagccatgtggactctccgtcaacaaccgcatggttaaatgtaaaaccaatgaagaagccgtcaactaactctgtcacttgcac 40146763  T
Q  396 tgccaacaacggttttgaggtgcct 420  Q
     || ||||| |||| ||| ||||||    
T  40146762 agctaacaatggttgtgatgtgcct 40146738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 15190757 - 15190642
Alignment:
Q  196 aaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttcag 295  Q
    |||||||||||||||||  ||||||  |||||||||||  |||| || |||||||| |||  ||||||||   |||| ||| ||| |||||| |||||||    
T  15190757 aaaggaaatcgtatgggacgttgaattccatttggaaataaacgttcaagtgttggaggtacagatattt---gatggcaagaaccacgtgagatttcag 15190661  T
Q  296 cccatgaattgatgaaatg 314  Q
    ||  |||||||||||||||    
T  15190660 ccagtgaattgatgaaatg 15190642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 319
Target Start/End: Original strand, 6501058 - 6501176
Alignment:
Q  197 aaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttcagc 296  Q
    |||||||||||||||   | |||| | ||||||||||| |||| ||||||| |||| |||| |||||||||| |   ||||||| |||||| ||||||||    
T  6501058 aaggaaatcgtatggaacgctgaatatcatttggaaac-aacgttctagtgatgggagtttggatatttgatta---caacaaccacgtgaaatttcagc 6501153  T
Q  297 ccatgaattgatgaaatgccaca 319  Q
    ||| ||| |||| ||||||||||    
T  6501154 ccaggaactgataaaatgccaca 6501176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 11969547 - 11969575
Alignment:
Q  289 atttcagcccatgaattgatgaaatgcca 317  Q
    |||||||||||||||||||||||||||||    
T  11969547 atttcagcccatgaattgatgaaatgcca 11969575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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