View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18112_high_1 (Length: 539)

Name: NF18112_high_1
Description: NF18112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18112_high_1
NF18112_high_1
[»] chr3 (7 HSPs)
chr3 (24-524)||(45800603-45801104)
chr3 (164-227)||(54187017-54187082)
chr3 (164-227)||(29235675-29235740)
chr3 (153-227)||(46893434-46893508)
chr3 (158-223)||(50320435-50320502)
chr3 (164-228)||(13639430-13639496)
chr3 (164-198)||(42780698-42780732)
[»] chr7 (6 HSPs)
chr7 (154-227)||(557465-557540)
chr7 (154-196)||(22159043-22159085)
chr7 (154-196)||(22217751-22217793)
chr7 (154-227)||(39237678-39237753)
chr7 (164-227)||(43930047-43930112)
chr7 (164-227)||(47822007-47822072)
[»] chr4 (4 HSPs)
chr4 (154-228)||(37306493-37306569)
chr4 (169-227)||(51475252-51475312)
chr4 (159-227)||(43480265-43480335)
chr4 (154-227)||(50251541-50251616)
[»] chr2 (3 HSPs)
chr2 (158-228)||(37285202-37285274)
chr2 (169-227)||(864188-864248)
chr2 (154-226)||(42635325-42635399)
[»] chr6 (2 HSPs)
chr6 (164-227)||(32439504-32439569)
chr6 (164-227)||(7447654-7447718)
[»] chr5 (6 HSPs)
chr5 (153-216)||(18237235-18237300)
chr5 (164-227)||(30892135-30892200)
chr5 (158-197)||(7585008-7585047)
chr5 (154-227)||(17190697-17190774)
chr5 (160-227)||(32153781-32153850)
chr5 (153-198)||(34320979-34321024)
[»] chr1 (5 HSPs)
chr1 (154-227)||(11709666-11709739)
chr1 (173-227)||(17642388-17642444)
chr1 (164-227)||(19078939-19079004)
chr1 (164-227)||(19126827-19126892)
chr1 (164-227)||(31602087-31602152)
[»] chr8 (4 HSPs)
chr8 (154-223)||(6580847-6580918)
chr8 (159-198)||(38695672-38695711)
chr8 (164-227)||(33440592-33440657)
chr8 (164-197)||(14195233-14195266)


Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 24 - 524
Target Start/End: Original strand, 45800603 - 45801104
Alignment:
Q  24 gctaatcagaagaacatacataccagtaaaccgagaacaagggagacgcggcaatgtgtaattaggtttcctatagtagagtagtagttagggtttccat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45800603 gctaatcagaagaacatacataccagtaaaccgagaacaagggcgacgcggcaatgtgtaattaggtttcctatagtagagtagtagttagggtttccat 45800702  T
Q  124 acgtttagcactttatatatcgatgactattatggacactctctttctaacactcattctcttattggatgaaatatgtgggtaccacacattagaaatg 223  Q
    |||||||||||||||||||| || |||| ||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||     
T  45800703 acgtttagcactttatatattgaggactgttatggacactctgtttctaacactcattcttttattgggtgaaatatgtgggtaccacacattagaaata 45800802  T
Q  224 gatctggtgttagaaagtgagtgttcttagcatttctcttatatannnnnnnnnnnnncttcaattcaacggaccctaagcccaactttagaaaagnnnn 323  Q
     |||||||| ||||||| ||||||| ||||||||| |||||||||             ||||||||||||||||||||||||||||||||||||||        
T  45800803 tatctggtgctagaaagagagtgtttttagcatttttcttatatattttttcttttttcttcaattcaacggaccctaagcccaactttagaaaagaaaa 45800902  T
Q  324 nnnttaacgaagattaacctgataaatttggagaaattcaatcattagttttagatttttcctttcaaccacttaaaaacatcttattacatctaaa-tt 422  Q
         ||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45800903 aaaaaaacgaagattaacctggcaaatttggagaaattcaatcattatttttagatttttcctttcaaccacttaaaaacatcttattacatctaaattt 45801002  T
Q  423 aattaaaacttaataataatacggcaataccgaaattattttgtgttcatataaatttataaacaactcttttcatctatcattatatatcttcatctcc 522  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45801003 aattaaaacttattaataatacggcaataccgaaattattttgtgttcatataaatttataaacaacacttttcatctatcattatatatcttcatctcc 45801102  T
Q  523 tc 524  Q
    ||    
T  45801103 tc 45801104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 54187082 - 54187017
Alignment:
Q  164 ctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    |||| ||||||||||| ||||||||||| |||| |  |||||||||||||||||||||||||||||    
T  54187082 ctctctctaacactcactctcttattgggtgaagttcatgtgggtaccacacattagaaatggatc 54187017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 29235675 - 29235740
Alignment:
Q  164 ctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    |||| ||||||||||| ||||||||||| ||||||  ||| || ||||||||||||||||||||||    
T  29235675 ctctctctaacactcactctcttattgggtgaaattcatgaggataccacacattagaaatggatc 29235740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 46893508 - 46893434
Alignment:
Q  153 ttatggacactctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    |||||||||||||||  |||||||||| |||||||||  |||||||  ||||||||| |||||||| ||||||||||    
T  46893508 ttatggacactctct--ctaacactcactctcttattaaatgaaattcatgtgggtaacacacattggaaatggatc 46893434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 50320435 - 50320502
Alignment:
Q  158 gacactctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatg 223  Q
    |||||||||||||||||| | ||||||||||||| |||| |  || |||||| |||||||||||||||    
T  50320435 gacactctctttctaacatttattctcttattgggtgaagttcatatgggtatcacacattagaaatg 50320502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 13639430 - 13639496
Alignment:
Q  164 ctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatct 228  Q
    |||| ||||||| ||| ||| ||||||||||||||  ||||||||| |||||||| |||||||||||    
T  13639430 ctctctctaacagtcactcttttattggatgaaattcatgtgggtatcacacattggaaatggatct 13639496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 42780698 - 42780732
Alignment:
Q  164 ctctttctaacactcattctcttattggatgaaat 198  Q
    |||| ||||||||||||||||||||||||||||||    
T  42780698 ctctctctaacactcattctcttattggatgaaat 42780732  T

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Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 557540 - 557465
Alignment:
Q  154 tatggacactctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    |||||||||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||||||    
T  557540 tatggacactctctttctaacactcactctcttattggatgaaattcatgtgggtatcacacattaaaaatggatc 557465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 22159043 - 22159085
Alignment:
Q  154 tatggacactctctttctaacactcattctcttattggatgaa 196  Q
    |||||| ||||||||||||||||||||||||||||||| ||||    
T  22159043 tatggatactctctttctaacactcattctcttattgggtgaa 22159085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 22217751 - 22217793
Alignment:
Q  154 tatggacactctctttctaacactcattctcttattggatgaa 196  Q
    |||||| ||||||||||||||||||||||||||||||| ||||    
T  22217751 tatggatactctctttctaacactcattctcttattgggtgaa 22217793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 39237678 - 39237753
Alignment:
Q  154 tatggacactctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    |||||||| | |||||| |||||||| ||| ||||||| |||| |  |||||||||||||||||| ||||||||||    
T  39237678 tatggacattttctttccaacactcactcttttattgggtgaagtttatgtgggtaccacacattggaaatggatc 39237753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 43930112 - 43930047
Alignment:
Q  164 ctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    |||| ||||||||||| ||| ||||||| ||||||  ||||||||||||||||||  |||||||||    
T  43930112 ctctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgaaaatggatc 43930047  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 47822007 - 47822072
Alignment:
Q  164 ctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    |||| ||||||||||| |||  |||||| ||||||  |||||||||||||||||| ||||||||||    
T  47822007 ctctctctaacactcactcttatattgggtgaaatccatgtgggtaccacacattggaaatggatc 47822072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 37306569 - 37306493
Alignment:
Q  154 tatggacactctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatct 228  Q
    |||||||||| ||||||||||||||| | ||||||||| ||||||  |||||||||||||||||| |||||||||||    
T  37306569 tatggacactttctttctaacactcactttcttattgggtgaaattcatgtgggtaccacacattggaaatggatct 37306493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 51475312 - 51475252
Alignment:
Q  169 tctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    |||||||| || ||||||||||| ||||||  |||||||||||||||||| ||||||||||    
T  51475312 tctaacacccactctcttattgggtgaaatccatgtgggtaccacacattggaaatggatc 51475252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 43480265 - 43480335
Alignment:
Q  159 acactctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    |||| |||| ||||||||||| | ||||||||| ||||||  ||||||||||||||||||  |||||||||    
T  43480265 acaccctctctctaacactcactttcttattggctgaaattcatgtgggtaccacacattgaaaatggatc 43480335  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 50251616 - 50251541
Alignment:
Q  154 tatggacactctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    |||| ||||||||||||||||||||| | | ||||||| ||||||  |||||| |||||||| ||  |||||||||    
T  50251616 tatgaacactctctttctaacactcacttttttattgggtgaaattcatgtggataccacacgttgaaaatggatc 50251541  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 37285274 - 37285202
Alignment:
Q  158 gacactctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatct 228  Q
    |||||||||||||||||||||| ||| ||||||| ||||||  |||||||||||||||||| |||||||||||    
T  37285274 gacactctctttctaacactcactcttttattgggtgaaattcatgtgggtaccacacattggaaatggatct 37285202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 864248 - 864188
Alignment:
Q  169 tctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    ||||||||||| ||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  864248 tctaacactcactctcttattgggtgaaattcatgtgggtaccacacattagaaatggatc 864188  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 42635325 - 42635399
Alignment:
Q  154 tatggacactctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggat 226  Q
    |||||||||||||||||||| || || | | ||||||| ||||||  ||||||||||||||||||  ||||||||    
T  42635325 tatggacactctctttctaatacccacttttttattgggtgaaattcatgtgggtaccacacattgaaaatggat 42635399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 32439504 - 32439569
Alignment:
Q  164 ctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    |||| ||||||||||| ||||||||||| ||||||  |||||||||||||||||| ||||||||||    
T  32439504 ctctctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattggaaatggatc 32439569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 7447718 - 7447654
Alignment:
Q  164 ctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    |||| ||||||| ||| |||||| |||| ||||||  |||||||||||||||||||||||||||||    
T  7447718 ctctctctaaca-tcactctcttgttgggtgaaattcatgtgggtaccacacattagaaatggatc 7447654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 18237300 - 18237235
Alignment:
Q  153 ttatggacactctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacatt 216  Q
    ||||||||||||||||||||||||||| ||| ||||||| ||||||  ||||||||| ||||||||    
T  18237300 ttatggacactctctttctaacactcactcttttattgggtgaaattcatgtgggtatcacacatt 18237235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 30892135 - 30892200
Alignment:
Q  164 ctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    |||||||||||||||| ||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  30892135 ctctttctaacactcactctcttattcggtgaagttcatgtgggtaccacacattagaaatggatc 30892200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 7585008 - 7585047
Alignment:
Q  158 gacactctctttctaacactcattctcttattggatgaaa 197  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  7585008 gacactctcttttcaacactcattctcttattggatgaaa 7585047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 17190774 - 17190697
Alignment:
Q  154 tatggacactctctttctaacactca--ttctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    |||| ||||| ||||||||||||||   ||||||| |||| ||||||  ||| |||||||||||||||||||||||||    
T  17190774 tatgtacactttctttctaacactctctttctcttgttgggtgaaattcatgcgggtaccacacattagaaatggatc 17190697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 32153850 - 32153781
Alignment:
Q  160 cactctctttctaacactcattctcttattggatgaaa--tatgtgggtaccacacattagaaatggatc 227  Q
    |||||||||||||||||||| ||||||||||| |||||   |||||| | |||||| || ||||||||||    
T  32153850 cactctctttctaacactcactctcttattgggtgaaacccatgtggatcccacactttggaaatggatc 32153781  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 34321024 - 34320979
Alignment:
Q  153 ttatggacactctctttctaacactcattctcttattggatgaaat 198  Q
    ||||| ||||||||||| |||||||||||||||| |||| ||||||    
T  34321024 ttatgaacactctctttttaacactcattctcttgttgggtgaaat 34320979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 11709739 - 11709666
Alignment:
Q  154 tatggacactctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    ||||||||||||||  |||||||||| ||||||||||  ||||||  |||||||||||||||||| ||||||||||    
T  11709739 tatggacactctct--ctaacactcactctcttattgagtgaaattcatgtgggtaccacacattggaaatggatc 11709666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 17642388 - 17642444
Alignment:
Q  173 acactcattctcttattggatgaaata--tgtgggtaccacacattagaaatggatc 227  Q
    ||||||||| ||||||| | |||||||  ||||||||||||||||||||||||||||    
T  17642388 acactcattttcttattagctgaaatacatgtgggtaccacacattagaaatggatc 17642444  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 19078939 - 19079004
Alignment:
Q  164 ctctttctaacactcattctcttattggatgaaa--tatgtgggtaccacacattagaaatggatc 227  Q
    |||| ||||||||||| ||||||||||| |||||   ||| |||||||||||||| ||||||||||    
T  19078939 ctctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatc 19079004  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 19126827 - 19126892
Alignment:
Q  164 ctctttctaacactcattctcttattggatgaaa--tatgtgggtaccacacattagaaatggatc 227  Q
    |||| ||||||||||| ||||||||||| |||||   ||| |||||||||||||| ||||||||||    
T  19126827 ctctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatc 19126892  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 31602087 - 31602152
Alignment:
Q  164 ctctttctaacactcattctcttattggatgaaa--tatgtgggtaccacacattagaaatggatc 227  Q
    |||| |||||||||||||||||||||||||||||   ||||||||  ||||| || ||||||||||    
T  31602087 ctctctctaacactcattctcttattggatgaaactcatgtgggtctcacactttggaaatggatc 31602152  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 6580847 - 6580918
Alignment:
Q  154 tatggacactctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatg 223  Q
    |||||||| ||||||||||||| |||  |||||||||| ||||||  |||||||||||||||||| ||||||    
T  6580847 tatggacagtctctttctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattggaaatg 6580918  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 38695672 - 38695711
Alignment:
Q  159 acactctctttctaacactcattctcttattggatgaaat 198  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  38695672 acactctctttataacactcactctcttattggatgaaat 38695711  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 33440657 - 33440592
Alignment:
Q  164 ctctttctaacactcattctcttattggatgaaat--atgtgggtaccacacattagaaatggatc 227  Q
    |||| ||||||| ||| ||||||||||| |||||   |||||||||||||||||| ||||||||||    
T  33440657 ctctctctaacattcactctcttattgggtgaaagtcatgtgggtaccacacattggaaatggatc 33440592  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 14195233 - 14195266
Alignment:
Q  164 ctctttctaacactcattctcttattggatgaaa 197  Q
    |||| |||||||||||||||||||||||||||||    
T  14195233 ctctctctaacactcattctcttattggatgaaa 14195266  T

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