View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18112_high_4 (Length: 253)
Name: NF18112_high_4
Description: NF18112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18112_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 30947278 - 30947053
Alignment:
| Q |
18 |
acaaatgccattgattcgtgttgaatgatgaaattcgattggtgatgaagatgatcgagtgttgattgggaatgtcgaagggagagaacggaaatggcga |
117 |
Q |
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| T |
30947278 |
acaaatgccattgattcgtgttgaatgatgaaatttgattggtgatgaagatgatcgagtgttgattgggaatgtcgaagggagagaacggaaatggcga |
30947179 |
T |
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| Q |
118 |
gggagaacagagagaacgaacgaaagtgaaagcgtggaaaattaaaagaataagaactaccggcactttgatatgtttcttacataacttcaaacttgga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30947178 |
gggagaacagagagaacgaacgaaagtgaaagcgtggaaaatcaaaagaataagaactaccggcactttgatatgtttcttacataacttcaaacttgga |
30947079 |
T |
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| Q |
218 |
atttcatgtaacagcttttcttcatc |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
30947078 |
atttcatgtaacagcttttcttcatc |
30947053 |
T |
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