View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18112_low_2 (Length: 463)

Name: NF18112_low_2
Description: NF18112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18112_low_2
NF18112_low_2
[»] chr5 (10 HSPs)
chr5 (17-454)||(12517013-12517453)
chr5 (18-212)||(11845105-11845303)
chr5 (265-389)||(35470079-35470204)
chr5 (278-388)||(41174123-41174234)
chr5 (266-397)||(3494493-3494625)
chr5 (265-326)||(17904319-17904381)
chr5 (265-392)||(5844331-5844459)
chr5 (291-345)||(28993895-28993949)
chr5 (83-128)||(11855534-11855579)
chr5 (43-102)||(11783387-11783447)
[»] chr6 (3 HSPs)
chr6 (274-392)||(32604487-32604606)
chr6 (337-391)||(33513910-33513964)
chr6 (295-327)||(1288186-1288218)
[»] chr1 (19 HSPs)
chr1 (265-391)||(50075562-50075689)
chr1 (278-398)||(13383047-13383168)
chr1 (266-382)||(12570107-12570224)
chr1 (266-398)||(47949992-47950125)
chr1 (265-392)||(14149472-14149599)
chr1 (269-392)||(21008171-21008295)
chr1 (269-398)||(36438354-36438484)
chr1 (266-397)||(24439125-24439257)
chr1 (274-367)||(47445975-47446069)
chr1 (266-400)||(47176699-47176835)
chr1 (265-399)||(7789445-7789579)
chr1 (266-352)||(46288797-46288884)
chr1 (265-367)||(23452926-23453027)
chr1 (294-397)||(30321939-30322042)
chr1 (266-391)||(35652485-35652611)
chr1 (266-313)||(47449230-47449278)
chr1 (266-392)||(10987201-10987328)
chr1 (331-393)||(44487705-44487767)
chr1 (266-367)||(30910187-30910293)
[»] chr3 (14 HSPs)
chr3 (266-392)||(33967942-33968069)
chr3 (265-392)||(50302975-50303103)
chr3 (265-391)||(55406866-55406993)
chr3 (266-398)||(34819739-34819872)
chr3 (266-394)||(28958552-28958680)
chr3 (270-390)||(33640930-33641051)
chr3 (266-382)||(47068887-47069004)
chr3 (274-398)||(28309469-28309593)
chr3 (266-391)||(21758272-21758397)
chr3 (294-397)||(12790031-12790137)
chr3 (266-367)||(47068774-47068877)
chr3 (266-367)||(14998753-14998854)
chr3 (266-353)||(52247428-52247516)
chr3 (266-353)||(50164025-50164113)
[»] chr7 (9 HSPs)
chr7 (266-398)||(23031711-23031844)
chr7 (269-392)||(2457899-2458023)
chr7 (294-367)||(44599400-44599473)
chr7 (294-392)||(32650091-32650189)
chr7 (291-385)||(42934135-42934228)
chr7 (266-398)||(3399231-3399363)
chr7 (266-392)||(36783218-36783337)
chr7 (266-327)||(35265365-35265427)
chr7 (294-326)||(34000834-34000866)
[»] chr8 (7 HSPs)
chr8 (266-391)||(40330141-40330267)
chr8 (274-398)||(33274235-33274360)
chr8 (266-392)||(12398039-12398167)
chr8 (265-398)||(12892578-12892706)
chr8 (266-367)||(18310505-18310610)
chr8 (266-397)||(404352-404483)
chr8 (266-364)||(23736938-23737040)
[»] chr2 (16 HSPs)
chr2 (266-398)||(35813791-35813925)
chr2 (270-367)||(28226174-28226272)
chr2 (281-390)||(39958814-39958925)
chr2 (266-367)||(43664802-43664904)
chr2 (266-398)||(43592672-43592797)
chr2 (331-398)||(32839056-32839123)
chr2 (296-392)||(33440816-33440912)
chr2 (266-384)||(4283410-4283529)
chr2 (266-392)||(11252545-11252672)
chr2 (266-366)||(8335231-8335332)
chr2 (266-388)||(3369892-3370015)
chr2 (339-392)||(44722584-44722637)
chr2 (309-400)||(1662340-1662431)
chr2 (313-388)||(2674285-2674360)
chr2 (275-367)||(9886853-9886947)
chr2 (269-354)||(37624996-37625082)
[»] chr4 (11 HSPs)
chr4 (266-391)||(27574590-27574716)
chr4 (291-398)||(29431792-29431899)
chr4 (266-393)||(6942200-6942320)
chr4 (266-326)||(19594461-19594522)
chr4 (269-353)||(48818466-48818551)
chr4 (267-369)||(33977766-33977869)
chr4 (266-353)||(2720533-2720620)
chr4 (265-327)||(40293578-40293641)
chr4 (266-327)||(17354491-17354553)
chr4 (269-358)||(54612607-54612696)
chr4 (268-367)||(39835704-39835804)
[»] scaffold0172 (1 HSPs)
scaffold0172 (305-388)||(26389-26472)


Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 454
Target Start/End: Complemental strand, 12517453 - 12517013
Alignment:
Q  17 cactgttctccactttcacatagtaagaagtatagttatggtgtcagaaaaatattaaaccgtggcttttcaacgcaaatgctgaacaagaacatagccc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12517453 cactgttctccactttcacatagtaagaagtatagttatggtgtcagaaaaatattaaaccgtggcttttcaacgcaaatgctgaacaagaacatagccc 12517354  T
Q  117 taaagggtcaacaggtaggactctagtagtactagtagtaaatattttcagagtaaaagtgcttgaaataactcttcaattcacaggctttaattgnnnn 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  12517353 taaagggtcaacaggtaggactctagtagtactagtagtaaatattttcagagtaaaagtgcttgaaataactcttcaattcacaggctttaattgaaaa 12517254  T
Q  217 nnnncaaccattcattttattattgagttttagatttaatgaaaatgttaagataaggatcttaaaatagaaat-aacaataaatattgtattgaaaata 315  Q
        ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  12517253 aaaccaaccattcattttattattgagttttagatttaaggaaaatgttaagataaggatcttaaaatagaaataaacaataaatattttattgaaaata 12517154  T
Q  316 taaatttttaagctcttaagattatgaatgaacaatttttaaggttaaatttatttgtttagtttcttatcttgtgctcttag----aaagttagtaaga 411  Q
    |||||||||||||| ||||||||||||||||||||||| | ||||||||||||    |||||||||||||||||||| |||||     ||||||||||||    
T  12517153 taaatttttaagcttttaagattatgaatgaacaatttgttaggttaaattta----tttagtttcttatcttgtgcccttagggcacaagttagtaaga 12517058  T
Q  412 ccctagatttaactacat--tatctctccgtctaataagaataat 454  Q
    || |||||||||||||||  | |||||||||||||||||||||||    
T  12517057 ccttagatttaactacatactctctctccgtctaataagaataat 12517013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 11845105 - 11845303
Alignment:
Q  18 actgttctccactttcacatagtaagaagtatagttatggtgtcagaaaaatattaaaccgtggcttttcaacgcaaatgctgaacaagaacatagccct 117  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| ||||||| ||| |||| |    
T  11845105 actgttctccactttcacatagtaagaagtatagttatggtttcagaaaaatattaaaccgtggctcttcaacgtaaatgcagaacaaggacaaagccat 11845204  T
Q  118 aaagggtcaacaggt----aggactctagtagtactagtagtaaatattttcagagtaaaagtgcttgaaataactcttcaattcacaggctttaattg 212  Q
    |||||||||| ||||    || | |  ||||||||||||||||||||| ||||||||| ||  ||||||| |||||||||| |||||||||||||||||    
T  11845205 aaagggtcaataggtagtaagtagtacagtagtactagtagtaaatatcttcagagtacaatcgcttgaagtaactcttcagttcacaggctttaattg 11845303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 265 - 389
Target Start/End: Original strand, 35470079 - 35470204
Alignment:
Q  265 taagataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaa 363  Q
    ||||||||| |||||||||||||| ||| |||||| |||||||||||||| ||||||| ||||||| ||| |  ||||||||||||||||| ||||||||    
T  35470079 taagataagaatcttaaaatagaattaaacaataagtattgtattgaaaagataaattattaagcttttacgggtatgaatgaacaattttcaaggttaa 35470178  T
Q  364 atttatttgtttagtttcttatcttg 389  Q
    |||| ||| |||| ||||||||||||    
T  35470179 atttctttatttaatttcttatcttg 35470204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 278 - 388
Target Start/End: Complemental strand, 41174234 - 41174123
Alignment:
Q  278 ttaaaatagaaataac-aataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaatttatttgttta 376  Q
    ||||||||||| |||  |||||||||||||||||||| |||| |||||||| | ||||| ||||||||| |||||||| |||||||||||| | | ||||    
T  41174234 ttaaaatagaattaaataataaatattgtattgaaaaaataagtttttaagattttaagtttatgaatgtacaattttcaaggttaaatttttatattta 41174135  T
Q  377 gtttcttatctt 388  Q
    ||||||||||||    
T  41174134 gtttcttatctt 41174123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 266 - 397
Target Start/End: Original strand, 3494493 - 3494625
Alignment:
Q  266 aagataaggatcttaaaatagaaataacaa-taaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    ||||||||||||| ||||| ||| ||| || ||||| ||||||| |||| ||||||||||||| | ||||||||||||||| |||||||| ||| | |||    
T  3494493 aagataaggatctaaaaatggaattaaaaaataaatgttgtattaaaaagataaatttttaagtttttaagattatgaatgcacaattttcaagatcaaa 3494592  T
Q  365 tttatttgtttagtttcttatcttgtgctctta 397  Q
    ||| | | |||||||| |||| |||||| ||||    
T  3494593 tttttatatttagttttttattttgtgccctta 3494625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 326
Target Start/End: Original strand, 17904319 - 17904381
Alignment:
Q  265 taagataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaa 326  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||    
T  17904319 taagataaggatcttaaaatagaattaaacaataaaaattgtattgaaaagataaatttttaa 17904381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 392
Target Start/End: Complemental strand, 5844459 - 5844331
Alignment:
Q  265 taagataaggatcttaaaatagaaataacaa-taaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaa 363  Q
    ||||||||||| || ||||||||| ||| || |||||  || ||||||||||||| |||| ||    |||||||| ||| || || ||||||||| ||||    
T  5844459 taagataaggacctaaaaatagaattaaaaaataaatgctgcattgaaaatataagttttaaaatctttaagattgtgattgcacgatttttaagattaa 5844360  T
Q  364 atttatttgtttagtttcttatcttgtgc 392  Q
    |||| |   ||||||||||||||||||||    
T  5844359 atttctacatttagtttcttatcttgtgc 5844331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 28993895 - 28993949
Alignment:
Q  291 aacaataaatattgtattgaaaatataaatttttaagctcttaagattatgaatg 345  Q
    ||||||||||||||||||| |||||||| ||||||| || || || |||||||||    
T  28993895 aacaataaatattgtattgtaaatataagtttttaaacttttcaggttatgaatg 28993949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 11855534 - 11855579
Alignment:
Q  83 ttttcaacgcaaatgctgaacaagaacatagccctaaagggtcaac 128  Q
    |||||||||||||||| ||||||||||| |||| ||||| ||||||    
T  11855534 ttttcaacgcaaatgcagaacaagaacacagccataaagagtcaac 11855579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 11783447 - 11783387
Alignment:
Q  43 gaagtatagttatggtgtcagaaaaa-tattaaaccgtggcttttcaacgcaaatgctgaa 102  Q
    ||||||||||||| | |||| ||||| ||||||| ||||||| ||| ||||||||||||||    
T  11783447 gaagtatagttatcgcgtcaaaaaaaatattaaatcgtggctcttcgacgcaaatgctgaa 11783387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 32604606 - 32604487
Alignment:
Q  274 gatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaatttatttg 372  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| || ||||||||| |||     
T  32604606 gatcttaaaatagaaataaacaataaatattgtattgaaaatataaatttttaagctgttaggattatgaatgcacaattttcaatgttaaatttcttta 32604507  T
Q  373 tttagtttcttatcttgtgc 392  Q
    ||||||||||||||||||||    
T  32604506 tttagtttcttatcttgtgc 32604487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 33513964 - 33513910
Alignment:
Q  337 ttatgaatgaacaatttttaaggttaaatttatttgtttagtttcttatcttgtg 391  Q
    ||||||||| ||||||||||||||||||||| |   |||||||||||||||||||    
T  33513964 ttatgaatgcacaatttttaaggttaaatttctacatttagtttcttatcttgtg 33513910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 1288186 - 1288218
Alignment:
Q  295 ataaatattgtattgaaaatataaatttttaag 327  Q
    |||||||||||||||||||||||| ||||||||    
T  1288186 ataaatattgtattgaaaatataagtttttaag 1288218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 265 - 391
Target Start/End: Complemental strand, 50075689 - 50075562
Alignment:
Q  265 taagataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaa 363  Q
    |||||||| ||| ||||||||||||||| ||||||||||||  ||||||| |||| ||||||| || ||||||||||||||| |||||||||||||||||    
T  50075689 taagataaagattttaaaatagaaataaacaataaatattgcgttgaaaagataactttttaaacttttaagattatgaatgcacaatttttaaggttaa 50075590  T
Q  364 atttatttgtttagtttcttatcttgtg 391  Q
    |||| ||| |||| ||||||||||||||    
T  50075589 atttctttatttaatttcttatcttgtg 50075562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 398
Target Start/End: Original strand, 13383047 - 13383168
Alignment:
Q  278 ttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaatttatttgttta 376  Q
    ||||||||||||||| |||||||||||||||| ||||||||| ||||||| || ||||||||||||||| ||||||||  | ||||||||| ||| ||||    
T  13383047 ttaaaatagaaataaacaataaatattgtattaaaaatataagtttttaaacttttaagattatgaatgcacaattttcgaagttaaatttctttcttta 13383146  T
Q  377 gtttcttatcttgtgctcttag 398  Q
    |||||||||||||||| |||||    
T  13383147 gtttcttatcttgtgcccttag 13383168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 266 - 382
Target Start/End: Original strand, 12570107 - 12570224
Alignment:
Q  266 aagataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    ||||||| |||||||||||||||| || |||||||||||||||| ||||||||| ||||| | || ||||||||||||||| |||||||| |||||||||    
T  12570107 aagataaagatcttaaaatagaaacaaacaataaatattgtattaaaaatataagtttttgaacttttaagattatgaatgcacaattttcaaggttaaa 12570206  T
Q  365 tttatttgtttagtttct 382  Q
    ||| ||| ||||||||||    
T  12570207 tttctttatttagtttct 12570224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 398
Target Start/End: Original strand, 47949992 - 47950125
Alignment:
Q  266 aagataaggatcttaaaatagaaataacaa-taaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    ||||||||||||||||||||||| ||| || ||||||||| |||||||| | || |||||||||| ||||| ||||||||| |||||||  ||| |||||    
T  47949992 aagataaggatcttaaaatagaattaaaaaataaatattgcattgaaaagacaagtttttaagcttttaaggttatgaatgcacaatttgcaagattaaa 47950091  T
Q  365 tttatttgtttagtttcttatcttgtgctcttag 398  Q
    ||| |   |||||||||||||||||||| |||||    
T  47950092 tttctacatttagtttcttatcttgtgcccttag 47950125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 392
Target Start/End: Original strand, 14149472 - 14149599
Alignment:
Q  265 taagataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaa 363  Q
    ||||||||| |||||||||||||| ||| |||||| |||||||||||||| | ||||||| ||||| ||||| | ||||||  |||||||| || |||||    
T  14149472 taagataagaatcttaaaatagaagtaaacaataattattgtattgaaaagaaaaatttt-aagcttttaaggtcatgaatacacaattttcaaagttaa 14149570  T
Q  364 atttatttgtttagtttcttatcttgtgc 392  Q
    |||| ||| ||||||||||||||||||||    
T  14149571 atttctttatttagtttcttatcttgtgc 14149599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 269 - 392
Target Start/End: Complemental strand, 21008295 - 21008171
Alignment:
Q  269 ataaggatcttaaaatagaaataac-aataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaattt 367  Q
    ||||| |||||||||||||| |||  |||||||||||||||||||| |||| |||||||| | ||||| |  |||||| || ||||| || |||||| ||    
T  21008295 ataagaatcttaaaatagaattaaataataaatattgtattgaaaagataactttttaagtttttaaggtattgaatgcacgattttcaaagttaaaatt 21008196  T
Q  368 atttgtttagtttcttatcttgtgc 392  Q
     ||| ||||||||||||||||||||    
T  21008195 ctttatttagtttcttatcttgtgc 21008171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 398
Target Start/End: Complemental strand, 36438484 - 36438354
Alignment:
Q  269 ataaggatcttaaaatagaaat-aacaataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaattt 367  Q
    |||||||||||||||||||| | || ||||||||||| ||||||||||||| |||| ||| | ||||| ||||||||| | |||||  ||| |||| |||    
T  36438484 ataaggatcttaaaatagaatttaaaaataaatattgcattgaaaatataagttttgaagtttttaaggttatgaatgcaaaatttccaagattaagttt 36438385  T
Q  368 atttgtttagtttcttatcttgtgctcttag 398  Q
     |   |||||||||||||||||||| |||||    
T  36438384 ctacatttagtttcttatcttgtgcccttag 36438354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 397
Target Start/End: Original strand, 24439125 - 24439257
Alignment:
Q  266 aagataaggatcttaaaatagaaataacaa-taaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    |||||||| |||| || |||||| ||| || ||||||||||||| |||| |||| ||||||| || ||||||||||||||| |||||||| ||  |||||    
T  24439125 aagataagaatctaaatatagaattaaaaaataaatattgtattaaaaaaataagtttttaaacttttaagattatgaatgcacaattttcaaaattaaa 24439224  T
Q  365 tttatttgtttagtttcttatcttgtgctctta 397  Q
    ||| |   |||||||||||||| ||||| ||||    
T  24439225 tttttacatttagtttcttatcgtgtgccctta 24439257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 367
Target Start/End: Complemental strand, 47446069 - 47445975
Alignment:
Q  274 gatcttaaaatagaaataac-aataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaattt 367  Q
    ||||| ||||||||| |||  |||||||||||||||||||| |||||||||| | || |||||||||| |||| |||||||||||  ||||||||    
T  47446069 gatctaaaaatagaattaaataataaatattgtattgaaaagataaattttttaacttttaagattataaatgcacaatttttaaaattaaattt 47445975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 400
Target Start/End: Complemental strand, 47176835 - 47176699
Alignment:
Q  266 aagataaggatcttaaaatagaaat--aacaataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaa 363  Q
    ||||||||||||| ||||||||| |  || ||||||||||| ||||||||||| | ||||||  || | ||||||||||||| |||||||||||  ||||    
T  47176835 aagataaggatctaaaaatagaatttaaaaaataaatattgcattgaaaatatgagtttttatactttaaagattatgaatgcacaatttttaaaattaa 47176736  T
Q  364 atttatttgtttagtttcttatcttgtgctcttagaa 400  Q
    |||  |  ||||| |||| |||||||| | |||||||    
T  47176735 attactacgtttaatttcgtatcttgtacccttagaa 47176699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 399
Target Start/End: Original strand, 7789445 - 7789579
Alignment:
Q  265 taagataaggatcttaaaatagaaataacaa-taaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaa 363  Q
    |||||||| ||||||||||| ||| ||| || ||||||||| |||||||| ||||||||||||| | || |  |||| |||| |||||||| ||| ||||    
T  7789445 taagataatgatcttaaaatggaattaaaaaataaatattgcattgaaaa-ataaatttttaagattttgaagttataaatgcacaattttcaagattaa 7789543  T
Q  364 atttatttgtttagtttcttatcttgtgctcttaga 399  Q
    | || |   |||||||||||||||||||| ||||||    
T  7789544 acttttacatttagtttcttatcttgtgcccttaga 7789579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 352
Target Start/End: Original strand, 46288797 - 46288884
Alignment:
Q  266 aagataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatt 352  Q
    ||||||||||||| ||||||||| ||| ||||||||||| |||||| || |||| |||||||| | ||||| ||||||||| ||||||    
T  46288797 aagataaggatctcaaaatagaattaaacaataaatattatattgataaaataagtttttaagtttttaaggttatgaatgtacaatt 46288884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 367
Target Start/End: Complemental strand, 23453027 - 23452926
Alignment:
Q  265 taagataaggatcttaaaatagaa-ataacaataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaa 363  Q
    |||||||| ||||||||||||||| | || |||||||||||||||||||||||   |||||||| | ||||  |||||||||  ||||||| || |||||    
T  23453027 taagataaagatcttaaaatagaataaaataataaatattgtattgaaaatat--gtttttaagattttaatgttatgaatgtgcaattttcaaagttaa 23452930  T
Q  364 attt 367  Q
    ||||    
T  23452929 attt 23452926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 397
Target Start/End: Complemental strand, 30322042 - 30321939
Alignment:
Q  294 aataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaatttatttgtttagtttcttatcttgtgct 393  Q
    ||||||||||| |||||||| |||| |||||||| | ||||| ||   |||| |||||||||||| |||| ||| |   ||||||||||||||||||| |    
T  30322042 aataaatattgcattgaaaagataagtttttaagattttaaggtttaaaatgcacaatttttaagattaagtttctacatttagtttcttatcttgtgat 30321943  T
Q  394 ctta 397  Q
    ||||    
T  30321942 ctta 30321939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 391
Target Start/End: Original strand, 35652485 - 35652611
Alignment:
Q  266 aagataaggatcttaaaatagaaataac-aataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    ||||||| |||||||||||  || |||  ||||||||||| |||||||| |||| |||||||| | ||||| ||  ||||| |||||||| || |||||     
T  35652485 aagataaagatcttaaaattaaattaaataataaatattgcattgaaaagataagtttttaagttgttaaggtttagaatgcacaattttcaaagttaag 35652584  T
Q  365 tttatttgtttagtttcttatcttgtg 391  Q
    ||| |   |||||||||||||||||||    
T  35652585 tttctacatttagtttcttatcttgtg 35652611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 47449278 - 47449230
Alignment:
Q  266 aagataaggatcttaaaatagaaataac-aataaatattgtattgaaaa 313  Q
    |||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  47449278 aagataagaatcttaaaatagaattaactaataaatattgtattgaaaa 47449230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 392
Target Start/End: Original strand, 10987201 - 10987328
Alignment:
Q  266 aagataaggatcttaaaatagaaat-aacaataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    ||||||| ||||||||||||||    || ||||||||||| |||||||| |||| |||||||| | ||||  ||   |||| |||||||| ||||||||     
T  10987201 aagataaagatcttaaaatagattccaataataaatattgcattgaaaagataagtttttaagattttaaagtttaaaatgcacaattttcaaggttaag 10987300  T
Q  365 tttatttgtttagtttcttatcttgtgc 392  Q
    ||| |   ||||||||||||||||||||    
T  10987301 tttctacatttagtttcttatcttgtgc 10987328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 393
Target Start/End: Original strand, 44487705 - 44487767
Alignment:
Q  331 ttaagattatgaatgaacaatttttaaggttaaatttatttgtttagtttcttatcttgtgct 393  Q
    ||||||||||||||| ||||||| |||| ||||||||     |||||||||||||||||||||    
T  44487705 ttaagattatgaatgcacaatttctaagattaaatttcgacatttagtttcttatcttgtgct 44487767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 367
Target Start/End: Original strand, 30910187 - 30910293
Alignment:
Q  266 aagataaggatcttaaaatagaaat-aacaataaatattgtattgaaaatataaa----tttttaagctcttaagattatgaatgaacaatttttaaggt 360  Q
    |||||||| |||| ||||||||| | || ||||||| ||| |||||||| | |||    |||||||||| |||| ||| |||||| |||||||||||| |    
T  30910187 aagataagaatctaaaaatagaattgaaaaataaatgttggattgaaaaaaaaaaaaagtttttaagcttttaaaattttgaatgcacaatttttaagat 30910286  T
Q  361 taaattt 367  Q
    |||||||    
T  30910287 taaattt 30910293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 266 - 392
Target Start/End: Original strand, 33967942 - 33968069
Alignment:
Q  266 aagataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| |||||||| | ||||| ||||||||| |||||||  || ||||||    
T  33967942 aagataaggatcttataatagaaataaacaataaatattgtattaaaaatataactttttaagtttttaaggttatgaatgcacaatttccaatgttaaa 33968041  T
Q  365 tttatttgtttagtttcttatcttgtgc 392  Q
    ||| ||| ||| ||||||||||||||||    
T  33968042 tttctttattttgtttcttatcttgtgc 33968069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 392
Target Start/End: Original strand, 50302975 - 50303103
Alignment:
Q  265 taagataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaa 363  Q
    ||||||||  ||||||||||||||| || |||||||||||||||||||||||||| ||||| | || ||||||||||||||| |||||||  ||||||||    
T  50302975 taagataaatatcttaaaatagaaacaaacaataaatattgtattgaaaatataagtttttgaacttttaagattatgaatgcacaatttccaaggttaa 50303074  T
Q  364 atttatttgtttagtttcttatcttgtgc 392  Q
    |||| ||| ||| ||||||||| ||||||    
T  50303075 atttctttatttggtttcttatattgtgc 50303103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 265 - 391
Target Start/End: Complemental strand, 55406993 - 55406866
Alignment:
Q  265 taagataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaa 363  Q
    |||||||||||||||||||||||| ||| || |||||||||||||| ||| |||| |||| ||| | ||||| |||| |||| ||||||||||| |||||    
T  55406993 taagataaggatcttaaaatagaattaaacactaaatattgtattggaaaaataagttttaaagtttttaaggttataaatgcacaatttttaaagttaa 55406894  T
Q  364 atttatttgtttagtttcttatcttgtg 391  Q
    |||| ||| |||||||||||||||||||    
T  55406893 atttttttatttagtttcttatcttgtg 55406866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 398
Target Start/End: Original strand, 34819739 - 34819872
Alignment:
Q  266 aagataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    |||||||| |||||||||||||| ||| ||||||| ||||||||||||| |||||||||| | || ||||| ||||||||| |||||||| ||| | |||    
T  34819739 aagataagaatcttaaaatagaattaaacaataaaaattgtattgaaaagataaattttttaacttttaaggttatgaatgcacaattttcaagatcaaa 34819838  T
Q  365 tttatttgtttagtttcttatcttgtgctcttag 398  Q
    ||| ||| |||||||| ||||||||||| |||||    
T  34819839 tttctttatttagttttttatcttgtgcccttag 34819872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 394
Target Start/End: Complemental strand, 28958680 - 28958552
Alignment:
Q  266 aagataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    |||||||||||||||||| |||| ||| |||||| |||||||||||||| ||||||||| ||||| ||||| | ||||||  ||| |||| || ||||||    
T  28958680 aagataaggatcttaaaacagaagtaaacaataattattgtattgaaaagataaatttt-aagcttttaaggtcatgaatatacacttttcaaagttaaa 28958582  T
Q  365 tttatttgtttagtttcttatcttgtgctc 394  Q
    ||| ||| ||||||||||||||||||||||    
T  28958581 tttctttatttagtttcttatcttgtgctc 28958552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 390
Target Start/End: Complemental strand, 33641051 - 33640930
Alignment:
Q  270 taaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaattta 368  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||| | ||||  ||||||||| | ||||| |||  ||||||||     
T  33641051 taaggatcttaaaatagaattaaacaataaatattgtattgaaaatataagtttttaagattttaaagttatgaatgcaaaatttctaaaattaaatttc 33640952  T
Q  369 tttgtttagtttcttatcttgt 390  Q
    ||| ||| ||||||||||||||    
T  33640951 tttatttggtttcttatcttgt 33640930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 266 - 382
Target Start/End: Original strand, 47068887 - 47069004
Alignment:
Q  266 aagataaggatcttaaaatagaaat-aacaataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    ||||||||||||||| ||||||||| || ||||||||||||||| |||| |||| |||||||| | ||||  ||||||||| ||||||||||| ||||||    
T  47068887 aagataaggatcttagaatagaaatcaataataaatattgtattaaaaagataattttttaagtttttaaagttatgaatgcacaatttttaatgttaaa 47068986  T
Q  365 tttatttgtttagtttct 382  Q
    ||| ||| |||| |||||    
T  47068987 tttctttatttaatttct 47069004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 398
Target Start/End: Original strand, 28309469 - 28309593
Alignment:
Q  274 gatcttaaaatagaaataacaataaatattgtattgaaaatataa-atttttaagctcttaagattatgaatgaacaatttttaaggttaaatttatttg 372  Q
    ||||||||||||||| ||| |||||||||||||||||||| ||||  ||||||| || ||||| ||||| ||| ||||||||||| ||||||||| |       
T  28309469 gatcttaaaatagaactaaaaataaatattgtattgaaaaaataagttttttaatct-ttaaggttatgtatgtacaatttttaaagttaaatttttaca 28309567  T
Q  373 tttagtttcttatcttgtgctcttag 398  Q
    |||||||| ||||||||||| |||||    
T  28309568 tttagttttttatcttgtgcccttag 28309593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 391
Target Start/End: Original strand, 21758272 - 21758397
Alignment:
Q  266 aagataaggatcttaaaatagaaataacaataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaat 365  Q
    |||||||| |||||||||||||| ||| ||||||||||||||| ||||  ||| | ||||| || || || |  |||||| | |||||  || |||||||    
T  21758272 aagataagaatcttaaaatagaattaataataaatattgtattaaaaagttaactatttaaccttttgaggtattgaatgcataatttccaaagttaaat 21758371  T
Q  366 ttatttgtttagtttcttatcttgtg 391  Q
    || ||| |||| ||||||||||||||    
T  21758372 ttctttatttaatttcttatcttgtg 21758397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 397
Target Start/End: Complemental strand, 12790137 - 12790031
Alignment:
Q  294 aataaatattgtattgaaaatataaatttttaagctcttaagattatgaatga---acaatttttaaggttaaatttatttgtttagtttcttatcttgt 390  Q
    |||||||||||||||||||| ||||||||||||| | || || |||||||| |   |||||||  || ||||||||| |   |||| |||||||||||||    
T  12790137 aataaatattgtattgaaaagataaatttttaagatttttaggttatgaataatacacaatttacaaagttaaatttctacatttaatttcttatcttgt 12790038  T
Q  391 gctctta 397  Q
    |||||||    
T  12790037 gctctta 12790031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 367
Target Start/End: Original strand, 47068774 - 47068877
Alignment:
Q  266 aagataaggatcttaaaatagaaat-aacaataaatattgtattgaaaatataa-atttttaagctcttaagattatgaatgaacaatttttaaggttaa 363  Q
    ||||||||||||||| ||||||||| || |||||||||| |||| |||| ||||  |||||||| | |||  |||||||||| |||||||| || |||||    
T  47068774 aagataaggatcttagaatagaaataaataataaatattatattaaaaagataatttttttaagtttttacaattatgaatgcacaattttcaatgttaa 47068873  T
Q  364 attt 367  Q
    ||||    
T  47068874 attt 47068877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 367
Target Start/End: Complemental strand, 14998854 - 14998753
Alignment:
Q  266 aagataaggatcttaaaatagaaataacaa-taaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    |||||||| ||| |||||||||| ||| || || ||||| ||||||||| | || |||||||  | ||||||||||||||| |||||||||||| |||||    
T  14998854 aagataagaatcataaaatagaattaaaaaatatatattatattgaaaaga-aagtttttaaatttttaagattatgaatgtacaatttttaagattaaa 14998756  T
Q  365 ttt 367  Q
    |||    
T  14998755 ttt 14998753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 52247428 - 52247516
Alignment:
Q  266 aagataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaattt 353  Q
    ||||||| ||| ||||||||||| ||| |||||||||||||||| |||| | || | |||| ||| |||||| |||||||| |||||||    
T  52247428 aagataaagattttaaaatagaattaaacaataaatattgtattaaaaagacaagtatttaggcttttaagaatatgaatgcacaattt 52247516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 353
Target Start/End: Complemental strand, 50164113 - 50164025
Alignment:
Q  266 aagataaggatcttaaaatagaaataacaa-taaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaattt 353  Q
    ||||||||||||| ||| | ||| ||| || ||||| |||||||||||| ||||| ||||||| | || | |||||||||| |||||||    
T  50164113 aagataaggatctaaaagtggaattaaaaaataaatgttgtattgaaaagataaacttttaagtttttcaaattatgaatgcacaattt 50164025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 266 - 398
Target Start/End: Complemental strand, 23031844 - 23031711
Alignment:
Q  266 aagataaggatcttaaaatagaaat-aacaataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    ||||||| ||||||||||||||| | |||||||||||||||||| |||| ||||||||||||| | ||||| || |||||| |||||||| || ||| ||    
T  23031844 aagataatgatcttaaaatagaattgaacaataaatattgtattaaaaagataaatttttaagtttttaaggttgtgaatgcacaattttcaaagttgaa 23031745  T
Q  365 tttatttgtttagtttcttatcttgtgctcttag 398  Q
    ||| ||| |||||||||||||||||||| |||||    
T  23031744 tttctttatttagtttcttatcttgtgcacttag 23031711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 392
Target Start/End: Complemental strand, 2458023 - 2457899
Alignment:
Q  269 ataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaattt 367  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||| ||||  | ||||||| ||||| ||||||||| ||||||   || |||||||||    
T  2458023 ataaggatcttaaaatagaattaaacaatcaatattgtattgaaaagataagctcttaagcttttaaggttatgaatgcacaattcccaatgttaaattt 2457924  T
Q  368 atttgtttagtttcttatcttgtgc 392  Q
     ||| ||||||||||||||||||||    
T  2457923 ctttatttagtttcttatcttgtgc 2457899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 367
Target Start/End: Original strand, 44599400 - 44599473
Alignment:
Q  294 aataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaattt 367  Q
    ||||||||||||||||||||||||| |||||||| | ||||| |||| |||| |||||||||||||||||||||    
T  44599400 aataaatattgtattgaaaatataagtttttaagattttaaggttataaatgcacaatttttaaggttaaattt 44599473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 392
Target Start/End: Original strand, 32650091 - 32650189
Alignment:
Q  294 aataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaatttatttgtttagtttcttatcttgtgc 392  Q
    ||||||| |||||||||||| ||||||||||||| | ||||||||||| ||| |||||||  ||| | |||||| | | ||||||||||||||||||||    
T  32650091 aataaatgttgtattgaaaagataaatttttaagtttttaagattatgcatgcacaatttccaagatcaaatttctatatttagtttcttatcttgtgc 32650189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 291 - 385
Target Start/End: Original strand, 42934135 - 42934228
Alignment:
Q  291 aacaataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaatttatttgtttagtttcttat 385  Q
    |||||||||||||||||| |||| |||| |||||||| | ||||  ||||||||| |||||||| || ||||||||| ||| |||||||||||||    
T  42934135 aacaataaatattgtattaaaaaaataactttttaagtttttaatgttatgaatgtacaattttcaatgttaaattt-tttatttagtttcttat 42934228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 398
Target Start/End: Original strand, 3399231 - 3399363
Alignment:
Q  266 aagataaggatcttaaaatagaaat-aacaataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    ||||||||||||| ||||||||||| || ||||||||||| |||||||| |||| ||||||| || |||||||| |||||| | ||||| |||| ||||     
T  3399231 aagataaggatctaaaaatagaaatgaaaaataaatattgcattgaaaacataagtttttaaacttttaagatt-tgaatgcaaaatttctaagattaag 3399329  T
Q  365 tttatttgtttagtttcttatcttgtgctcttag 398  Q
    ||| |  || | |||| ||||||||||| |||||    
T  3399330 tttctacgtattgttttttatcttgtgcccttag 3399363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 392
Target Start/End: Complemental strand, 36783337 - 36783218
Alignment:
Q  266 aagataaggatcttaaaatagaaataac-aataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    |||||||| |||||||||||||| |||  |||||||||||||||||||| |||| ||||| || | ||        ||||| ||||||| ||| ||||||    
T  36783337 aagataagaatcttaaaatagaattaaataataaatattgtattgaaaagataactttttgaggtatt--------gaatgcacaatttctaaagttaaa 36783246  T
Q  365 tttatttgtttagtttcttatcttgtgc 392  Q
    ||| ||| ||||||||||||||||||||    
T  36783245 tttctttatttagtttcttatcttgtgc 36783218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 35265427 - 35265365
Alignment:
Q  266 aagataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaag 327  Q
    ||||||||||||||| |||| |||||| ||||||||||| |||  ||||||||| ||||||||    
T  35265427 aagataaggatcttataataaaaataaacaataaatattttatcaaaaatataagtttttaag 35265365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 34000834 - 34000866
Alignment:
Q  294 aataaatattgtattgaaaatataaatttttaa 326  Q
    ||||||| |||||||||||||||||||||||||    
T  34000834 aataaattttgtattgaaaatataaatttttaa 34000866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 266 - 391
Target Start/End: Original strand, 40330141 - 40330267
Alignment:
Q  266 aagataaggatcttaaaatagaaataac-aataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    ||||||| ||| |||||||| ||||||  ||||||||||||||||||||||||| |||||||  | ||||||||||||||| ||||||||||| ||| ||    
T  40330141 aagataatgatattaaaataaaaataaataataaatattgtattgaaaatataagtttttaaatttttaagattatgaatgcacaatttttaaagttgaa 40330240  T
Q  365 tttatttgtttagtttcttatcttgtg 391  Q
    ||||||| |||||||| |||| |||||    
T  40330241 tttatttatttagttttttattttgtg 40330267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 33274360 - 33274235
Alignment:
Q  274 gatcttaaaatagaaataac-aataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaatttatttg 372  Q
    |||||||||||||||||||  ||||||||||| |||||||| ||||||||||||| | ||||| ||   |||| ||||||||||||||||| ||| |       
T  33274360 gatcttaaaatagaaataaataataaatattgcattgaaaagataaatttttaagattttaaggtttaaaatgcacaatttttaaggttaagtttttaca 33274261  T
Q  373 tttagtttcttatcttgtgctcttag 398  Q
    |||||||||||||||||||| |||||    
T  33274260 tttagtttcttatcttgtgcccttag 33274235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 392
Target Start/End: Complemental strand, 12398167 - 12398039
Alignment:
Q  266 aagataaggatcttaaaatagaaataac-aataaatattgtattgaaaatataaa-tttttaagctcttaagattatgaatgaacaatttttaaggttaa 363  Q
    |||||||||||||||||||| || |||  |||||||  |||||||||||  | || |||||||||| ||||| ||||||||| |||||||  ||||||||    
T  12398167 aagataaggatcttaaaatataattaaataataaattatgtattgaaaaagttaagtttttaagcttttaaggttatgaatgtacaatttccaaggttaa 12398068  T
Q  364 atttatttgtttagtttcttatcttgtgc 392  Q
    |||| ||| ||||||||||||||||||||    
T  12398067 atttctttttttagtttcttatcttgtgc 12398039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 265 - 398
Target Start/End: Complemental strand, 12892706 - 12892578
Alignment:
Q  265 taagataaggatcttaaaatagaaataac-aataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaa 363  Q
    |||||||||||| |||||||| || |||  |||||||||| |||||||||||||| |||||||| | ||||| ||||||||| | |||||       |||    
T  12892706 taagataaggattttaaaataaaattaaataataaatattatattgaaaatataagtttttaagtttttaaggttatgaatgcataattt------ctaa 12892613  T
Q  364 atttatttgtttagtttcttatcttgtgctcttag 398  Q
    | || ||| ||||||||||||||||||||||||||    
T  12892612 aattctttatttagtttcttatcttgtgctcttag 12892578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 367
Target Start/End: Complemental strand, 18310610 - 18310505
Alignment:
Q  266 aagataaggatcttaaaatagaaata-acaataaata---ttgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggtt 361  Q
    ||||||| ||||||||||||||| || ||||||||||   |||||||||||| |||| ||||||| || ||||  ||||||||| ||||||| |||| ||    
T  18310610 aagataaagatcttaaaatagaattagacaataaataatattgtattgaaaagataagtttttaatcttttaaagttatgaatgtacaatttctaagatt 18310511  T
Q  362 aaattt 367  Q
    ||||||    
T  18310510 aaattt 18310505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 397
Target Start/End: Complemental strand, 404483 - 404352
Alignment:
Q  266 aagataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    |||||||  |||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||| | |||   |||| |||  |||||||||||| |||||    
T  404483 aagataaatatcttaaaatagaattaaacaataaatattgtattg-aaagataaatttttaagtttttacagttataaatatacaatttttaagattaaa 404385  T
Q  365 tttatttgtttagtttcttatcttgtgctctta 397  Q
    ||| |   |||| |||||||| |||| ||||||    
T  404384 tttttcgatttaatttcttattttgtactctta 404352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 364
Target Start/End: Complemental strand, 23737040 - 23736938
Alignment:
Q  266 aagataaggatcttaaaatagaaataa-caataaata---ttgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggtt 361  Q
    ||||||| ||||||||||||||| ||| |||||||||   || ||||||||| |||| ||||||| || ||||  ||||||||| |||||||||||| ||    
T  23737040 aagataaagatcttaaaatagaattaaacaataaataatattatattgaaaagataagtttttaatcttttaaagttatgaatgcacaatttttaagatt 23736941  T
Q  362 aaa 364  Q
    |||    
T  23736940 aaa 23736938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 266 - 398
Target Start/End: Original strand, 35813791 - 35813925
Alignment:
Q  266 aagataaggatcttaaaatagaaataa-caataaatattgtattgaaaata-taaatttttaagctcttaagattatgaatgaacaatttttaaggttaa 363  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||| ||||| | || ||||||||||||||| |||||||  ||||| ||    
T  35813791 aagataaagatcttaaaatagaaataaacaataaatattatattgaaaatagtaagttttttaacttttaagattatgaatgcacaatttccaaggtcaa 35813890  T
Q  364 atttatttgtttagtttcttatcttgtgctcttag 398  Q
    |||| ||| |||||||||||||||| ||| |||||    
T  35813891 atttctttatttagtttcttatcttttgcccttag 35813925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 270 - 367
Target Start/End: Complemental strand, 28226272 - 28226174
Alignment:
Q  270 taaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaattt 367  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||| |||| ||||||| || ||||||||||||||  ||||||| |||| ||||||||    
T  28226272 taaggatcttaaaatagaattaaacaataaatattatattgaaaagataagtttttaaacttttaagattatgaatacacaatttctaagtttaaattt 28226174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 281 - 390
Target Start/End: Complemental strand, 39958925 - 39958814
Alignment:
Q  281 aaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaa-atttatttgtttagt 378  Q
    |||||||||||| || |||||||||||||||||| ||| ||||||||||| ||||| | ||||||  ||||||||||| |||||  ||| ||| ||||||    
T  39958925 aaatagaaataaacactaaatattgtattgaaaagatatatttttaagcttttaaggtcatgaatacacaatttttaaagttaatttttttttatttagt 39958826  T
Q  379 ttcttatcttgt 390  Q
    ||||||||||||    
T  39958825 ttcttatcttgt 39958814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 367
Target Start/End: Complemental strand, 43664904 - 43664802
Alignment:
Q  266 aagataaggatcttaaaatagaaataacaa-taaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    ||||||| ||||| ||||||||| ||| || ||||||||  ||||||||||||| ||||||| || |||||||| |||||| |||||||||||| |||||    
T  43664904 aagataatgatctaaaaatagaattaaaaaataaatattacattgaaaatataagtttttaaacttttaagattttgaatgcacaatttttaagattaaa 43664805  T
Q  365 ttt 367  Q
    |||    
T  43664804 ttt 43664802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 398
Target Start/End: Complemental strand, 43592797 - 43592672
Alignment:
Q  266 aagataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    ||||||| |||||||||||||||  || ||||||||||||||||||||| |||| |||||||| |        |||||||| |||||||  ||||||||     
T  43592797 aagataaagatcttaaaatagaatgaaacaataaatattgtattgaaaagataagtttttaaggt--------tatgaatgcacaatttccaaggttaac 43592706  T
Q  365 tttatttgtttagtttcttatcttgtgctcttag 398  Q
    ||| ||| |||||||||||||||||||| |||||    
T  43592705 tttctttatttagtttcttatcttgtgcccttag 43592672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 331 - 398
Target Start/End: Complemental strand, 32839123 - 32839056
Alignment:
Q  331 ttaagattatgaatgaacaatttttaaggttaaatttatttgtttagtttcttatcttgtgctcttag 398  Q
    ||||| ||||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||| |||||    
T  32839123 ttaaggttatgaatgcacaatttctaaggttaaatttctttatttagtttcttatcttgtgcccttag 32839056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 392
Target Start/End: Complemental strand, 33440912 - 33440816
Alignment:
Q  296 taaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaatttatttgtttagtttcttatcttgtgc 392  Q
    |||||||||||||||||| |||| |||||||| | ||||| |||| |||| |||||| | || ||||||||| ||| |||| |||||||| ||||||    
T  33440912 taaatattgtattgaaaagataagtttttaagattttaaggttataaatgcacaattctcaatgttaaatttctttatttattttcttatattgtgc 33440816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 384
Target Start/End: Complemental strand, 4283529 - 4283410
Alignment:
Q  266 aagataaggatcttaaaatagaaataac-aataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    |||||||  ||||| |||||||| |||  |||||||||| |||| ||||||||| |||||||| | ||||| ||||||| | ||||||||||| ||||||    
T  4283529 aagataaatatcttgaaatagaattaaataataaatattatattaaaaatataagtttttaagattttaaggttatgaaagcacaatttttaaagttaaa 4283430  T
Q  365 tttatttgtttagtttctta 384  Q
    ||| |   ||||||||||||    
T  4283429 tttctacatttagtttctta 4283410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 392
Target Start/End: Complemental strand, 11252672 - 11252545
Alignment:
Q  266 aagataaggatcttaaaatagaaata-acaataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    ||||||||||||| ||||||||| || | |||||||  ||||||||||| |||| |||| || || ||||||||||||||  ||||||| |||| |||||    
T  11252672 aagataaggatctaaaaatagaattagaaaataaatggtgtattgaaaagataagttttgaaacttttaagattatgaattcacaatttctaagattaaa 11252573  T
Q  365 tttatttgtttagtttcttatcttgtgc 392  Q
    ||      ||||||||||||||||||||    
T  11252572 ttaccacatttagtttcttatcttgtgc 11252545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 366
Target Start/End: Complemental strand, 8335332 - 8335231
Alignment:
Q  266 aagataaggatcttaaaatagaaataacaa-taaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    |||| |||||||| ||||||||| ||| || ||||| ||| ||||||||||||| ||||||| || |||| |||||||||| | |||||||||  |||||    
T  8335332 aagagaaggatctaaaaatagaattaaaaaataaatgttgcattgaaaatataagtttttaaacttttaacattatgaatgcataatttttaaaattaaa 8335233  T
Q  365 tt 366  Q
    ||    
T  8335232 tt 8335231  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 388
Target Start/End: Complemental strand, 3370015 - 3369892
Alignment:
Q  266 aagataaggatcttaaaatagaaata-acaataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    ||||||| ||||| ||||||||| |  | ||||||| ||| |||||||  |||| |||| ||| | ||||||||||||||| |||||||||||| || ||    
T  3370015 aagataatgatctaaaaatagaatttcaaaataaatgttgcattgaaatgataagttttaaagttgttaagattatgaatgcacaatttttaagattgaa 3369916  T
Q  365 tttatttgtttagtttcttatctt 388  Q
    ||| |   ||||||||||||||||    
T  3369915 tttctacatttagtttcttatctt 3369892  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 392
Target Start/End: Original strand, 44722584 - 44722637
Alignment:
Q  339 atgaatgaacaatttttaaggttaaatttatttgtttagtttcttatcttgtgc 392  Q
    ||||||| |||||||||| |||||||||| ||| ||||||||||||| ||||||    
T  44722584 atgaatgcacaatttttatggttaaatttctttatttagtttcttattttgtgc 44722637  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 400
Target Start/End: Original strand, 1662340 - 1662431
Alignment:
Q  309 gaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaatttatttgtttagtttcttatcttgtgctcttagaa 400  Q
    ||||| |||| |||||||||| || || |  |||| | |||||||  || ||||||||| ||| |||||||| |||||||||||||||||||    
T  1662340 gaaaagataactttttaagcttttgaggtattgaaagcacaatttccaaagttaaatttttttatttagttttttatcttgtgctcttagaa 1662431  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 388
Target Start/End: Complemental strand, 2674360 - 2674285
Alignment:
Q  313 atataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaatttatttgtttagtttcttatctt 388  Q
    |||||||| ||||| || ||||||||||||||| |||||||| ||  |||||||| |   ||||||||||||||||    
T  2674360 atataaatgtttaaacttttaagattatgaatgcacaattttcaatattaaatttctacatttagtttcttatctt 2674285  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 367
Target Start/End: Original strand, 9886853 - 9886947
Alignment:
Q  275 atcttaaaatagaaataac-aataaatattgtattgaaaatataaattttta-agctcttaagattatgaatgaacaatttttaaggttaaattt 367  Q
    |||||||||||||| |||  ||| |||||||||||||||| |||| |||||  || | ||||  ||||||||| |||||||| ||||||||||||    
T  9886853 atcttaaaatagaattaaataattaatattgtattgaaaagataagttttttcaggttttaatgttatgaatgcacaattttcaaggttaaattt 9886947  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 354
Target Start/End: Complemental strand, 37625082 - 37624996
Alignment:
Q  269 ataaggatcttaaaatagaaat-aacaataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttt 354  Q
    ||||||| |||||||| ||||| || ||||||| || |||||||||||||| |||| || || |||||||  |||||| ||||||||    
T  37625082 ataaggagcttaaaatggaaattaaaaataaattttatattgaaaatataacttttaaaacttttaagatattgaatgcacaatttt 37624996  T

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Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 266 - 391
Target Start/End: Original strand, 27574590 - 27574716
Alignment:
Q  266 aagataaggatcttaaaatagaaataac-aataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    ||||||| ||||||||||||||| |||  ||||||||||| |||||||| ||||| ||||||| | ||||  ||||||||| ||||||||||| ||||||    
T  27574590 aagataaagatcttaaaatagaattaaataataaatattgaattgaaaagataaaattttaagattttaaagttatgaatgcacaatttttaaagttaaa 27574689  T
Q  365 tttatttgtttagtttcttatcttgtg 391  Q
    ||| | |||| ||||||||||||||||    
T  27574690 tttctatgttcagtttcttatcttgtg 27574716  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 398
Target Start/End: Complemental strand, 29431899 - 29431792
Alignment:
Q  291 aacaataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaatttatttgtttagtttcttatcttgt 390  Q
    ||||||||||||||||||||||  ||||||||||||| | ||||  || |||||| |||||||| || ||| ||||| ||| ||||||||||||||||||    
T  29431899 aacaataaatattgtattgaaatgataaatttttaagtttttaaagttgtgaatgcacaattttcaaagttgaatttctttatttagtttcttatcttgt 29431800  T
Q  391 gctcttag 398  Q
    || |||||    
T  29431799 gcccttag 29431792  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 393
Target Start/End: Complemental strand, 6942320 - 6942200
Alignment:
Q  266 aagataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaa 364  Q
    ||||||| |||||||||||| || ||| ||||||||||||||||||||| |||| |||        ||||||||||||||| |||||| | || ||||||    
T  6942320 aagataaagatcttaaaataaaattaaacaataaatattgtattgaaaagataagttt--------ttaagattatgaatgcacaattctcaaagttaaa 6942229  T
Q  365 tttatttgtttagtttcttatcttgtgct 393  Q
    ||| ||| ||||| || ||||||||||||    
T  6942228 tttctttatttagcttgttatcttgtgct 6942200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 19594522 - 19594461
Alignment:
Q  266 aagataaggatcttaaaatagaaata-acaataaatattgtattgaaaatataaatttttaa 326  Q
    |||||| |||||||||||||||| || |||||||||||||||||||||| |||| |||||||    
T  19594522 aagatagggatcttaaaatagaattatacaataaatattgtattgaaaagataagtttttaa 19594461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 353
Target Start/End: Complemental strand, 48818551 - 48818466
Alignment:
Q  269 ataaggatcttaaaatagaaataa-caataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaattt 353  Q
    |||||||||||||||||||| ||| ||||||||| || |||||||| |||| ||||||| || ||||  ||||||||| |||||||    
T  48818551 ataaggatcttaaaatagaattaaacaataaataatgcattgaaaagataagtttttaaacttttaatgttatgaatgcacaattt 48818466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 369
Target Start/End: Complemental strand, 33977869 - 33977766
Alignment:
Q  267 agataaggatcttaaaatagaaataacaa-taaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaat 365  Q
    |||||||||| |||||||| || ||| || ||||||||| |||||||| |||||||||||| || ||||   |||||||| | |||||||||| |||||     
T  33977869 agataaggatattaaaatataattaaaaaataaatattgcattgaaaagataaatttttaaacttttaatggtatgaatgtataatttttaagattaaac 33977770  T
Q  366 ttat 369  Q
    ||||    
T  33977769 ttat 33977766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 2720533 - 2720620
Alignment:
Q  266 aagataaggatcttaaaatagaaataacaa-taaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaattt 353  Q
    ||||||||||||| ||||||||| ||| || ||||||||| |||||| | |||| |||||||||| |||||||| | |||| |||||||    
T  2720533 aagataaggatctaaaaatagaattaaaaattaaatattgcattgaagagataactttttaagct-ttaagattctaaatgcacaattt 2720620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 327
Target Start/End: Original strand, 40293578 - 40293641
Alignment:
Q  265 taagataaggatcttaaaatagaaataac-aataaatattgtattgaaaatataaatttttaag 327  Q
    |||||||| ||||||||||||||| |||  |||||||||||  ||||||| |||||||||||||    
T  40293578 taagataaagatcttaaaatagaattaaataataaatattgcgttgaaaagataaatttttaag 40293641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 17354491 - 17354553
Alignment:
Q  266 aagataaggatcttaaaatagaaataac-aataaatattgtattgaaaatataaatttttaag 327  Q
    ||||||| |||||||||||||||  ||  |||||||||||||||||||| |||| ||||||||    
T  17354491 aagataaagatcttaaaatagaatcaaataataaatattgtattgaaaagataagtttttaag 17354553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 358
Target Start/End: Complemental strand, 54612696 - 54612607
Alignment:
Q  269 ataaggatcttaaaatagaaataacaataaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaag 358  Q
    |||||||||| ||| ||||| ||| ||||||| ||| |||||||||||||  |||||| || ||||  ||||||||  ||||||| ||||    
T  54612696 ataaggatctaaaactagaattaaaaataaatgttgcattgaaaatataagattttaaacttttaaatttatgaatacacaatttctaag 54612607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 367
Target Start/End: Original strand, 39835704 - 39835804
Alignment:
Q  268 gataaggatcttaaaatagaaataacaa-taaatattgtattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaatt 366  Q
    ||||||||| | ||||||||| ||| || ||||||||  ||| |||| |||| |||||| ||| ||||||||||||||  ||||||| |||  |||||||    
T  39835704 gataaggatttaaaaatagaattaaaaaataaatattacatttaaaagataagtttttaggcttttaagattatgaatacacaatttataaaattaaatt 39835803  T
Q  367 t 367  Q
    |    
T  39835804 t 39835804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 388
Target Start/End: Original strand, 26389 - 26472
Alignment:
Q  305 tattgaaaatataaatttttaagctcttaagattatgaatgaacaatttttaaggttaaatttatttgtttagtttcttatctt 388  Q
    |||||| ||||||||||||||| || ||||| ||||||||| ||||||||  ||||||||||| |  ||||| |||||||||||    
T  26389 tattgataatataaatttttaatcttttaaggttatgaatgcacaattttcgaggttaaatttttacgtttaatttcttatctt 26472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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