View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18112_low_3 (Length: 308)
Name: NF18112_low_3
Description: NF18112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18112_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 528139 - 527857
Alignment:
| Q |
18 |
caaacaatatgaaagatgttgttagcgaataattaaggatgatttaatttaatgtacttacacgataaaagttaatcataaatgttggatcattatttta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
528139 |
caaacaatatgaaagatgttgttagcgaataattaaggatgatttaatttaatgtacttacacggtaaaagttaatcataaatgttggatcattattttt |
528040 |
T |
|
| Q |
118 |
aattttttgcagggcatatctattttgaaaatcgtaataaatgatgaggtacctctttcctaaggagagcattctccagtcttagctgctgctcctcatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
528039 |
aattttttgcagggcatatctattttgaaaatcgtaataaatgatgaggtacctctttcctaaggagagcattctccagtcttagctgctgctcctcatg |
527940 |
T |
|
| Q |
218 |
tgacatttccccagcgttagaggaacttccacatactttgcatgtggtactaattgcccccttgtatctatcaagttcatctc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
527939 |
tgacatttccccagcgttagaggaacttccacatactttgcatgtggtactaattgcccccttgtatctatcaagttcatctc |
527857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University