View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18113_high_1 (Length: 461)
Name: NF18113_high_1
Description: NF18113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18113_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 10697576 - 10698018
Alignment:
| Q |
1 |
acgtccgtaaatttgtcattgtgacttgtgagaaatgatatttaatatacttgtaattgaatacatgcatataaaaacagttgtgttattttccaaaaca |
100 |
Q |
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| T |
10697576 |
acgtccgtaaatttgtctttgtgacttgtgagaaatgatatttaatatacttgtaattgaatacatgcatataaaaacacttgtgttattttccaataca |
10697675 |
T |
|
| Q |
101 |
aaactttcacatcaaatttcaaccacaattttgatgaaaataacatgtactcgtgaatcactaatcatctacatagcacaactaactataatttttagat |
200 |
Q |
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| T |
10697676 |
aaactttcacatcaaacttcaaccacaattttcatgaaaataacatgtactcgtgaatcactaatcatctacatagcacaactaactataatttttagat |
10697775 |
T |
|
| Q |
201 |
gtaaaaatatacattatttttgtgggttgggtttggaggtttagggttcaaattctaacaaagagaaaaaactaacatagcaactaacataataatattt |
300 |
Q |
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| T |
10697776 |
gtaaaaatatacattatttttgtgggttgggtttggaggtttaaggttcaaattctaacaaagagaaaaaactaacatagcaactaatatactaatattt |
10697875 |
T |
|
| Q |
301 |
gtcattnnnnnnntatattatttttaatccactnnnnnnntattttcagtgtaacctttcaaattgtgtttttctacttcttttaataactaatgttaga |
400 |
Q |
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| T |
10697876 |
atcattaaaaaaatatattatttttaatccactaaaaaaatattttcagtgtaacctttcaaattgtgtttttctacttcttttaataactaatgttaga |
10697975 |
T |
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| Q |
401 |
ttaacaacttttttctccttctccctgtttgtacccatgactt |
443 |
Q |
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| T |
10697976 |
ttaacaacttttttctccttctccctgtttgtacccatgactt |
10698018 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 13762239 - 13762195
Alignment:
| Q |
262 |
agagaaaaaactaacatagcaactaacataataatatttgtcatt |
306 |
Q |
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| T |
13762239 |
agagaaaaaactaacataacaattaacatattaatatttgtcatt |
13762195 |
T |
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