View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18113_high_2 (Length: 424)
Name: NF18113_high_2
Description: NF18113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18113_high_2 |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 297 - 424
Target Start/End: Complemental strand, 4679834 - 4679707
Alignment:
| Q |
297 |
agaaaacggaaacaatttaagtaatatgtttgagcacttttctgaataaagaagatttgtgctttttctcattgctagtcttgacttcaagcttttccaa |
396 |
Q |
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| T |
4679834 |
agaaaacagaaacaatttaagtaatatgtttgagcacttttctgaataaagaagatttgtgctttttctcattgctagtcttgacttcaagcttttccaa |
4679735 |
T |
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| Q |
397 |
catgctctccagctccttcagatgatcc |
424 |
Q |
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| T |
4679734 |
catgctctccaactccttcagatgatcc |
4679707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 15593801 - 15593903
Alignment:
| Q |
226 |
acaagagcctgagagggatctttatctggaagcaaggtctttaaataagttaataaaacta-aaaacaagacagaaaacggaaacaatttaagtaatatg |
324 |
Q |
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| T |
15593801 |
acaagtgcctgatagggatcttgatttggaagcaaggttttcaaatatgctactaaaactagaaaacaagacagaaaacacaaacaatttaagcaacatg |
15593900 |
T |
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| Q |
325 |
ttt |
327 |
Q |
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||| |
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| T |
15593901 |
ttt |
15593903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 424
Target Start/End: Original strand, 8658295 - 8658375
Alignment:
| Q |
344 |
aaagaagatttgtgctttttctcattgctagtcttgacttcaagcttttccaacatgctctccagctccttcagatgatcc |
424 |
Q |
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| T |
8658295 |
aaagaagatttgtgcttattctcaatgccagtattgactacaagcttttccaacatgatttccagctccttcagatgatcc |
8658375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 1300391 - 1300467
Alignment:
| Q |
348 |
aagatttgtgctttttctcattgctagtcttgacttcaagcttttccaacatgctctccagctccttcagatgatcc |
424 |
Q |
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| T |
1300391 |
aagatttgggtttattctcaatgccagtattgactacaagcttttccaacaaaatctccagctccttgagatgatcc |
1300467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 8586895 - 8586862
Alignment:
| Q |
391 |
ttccaacatgctctccagctccttcagatgatcc |
424 |
Q |
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| T |
8586895 |
ttccaacatgctctcaagctccttcagatgatcc |
8586862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 1767146 - 1767227
Alignment:
| Q |
239 |
agggatctttatctggaagcaaggtctttaaataagttaataaaact-aaaaacaagacagaaaacggaaacaatttaagta |
319 |
Q |
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| T |
1767146 |
agggatcttgatcttgaagcaaggttttcaaatatgttactaaaactaaaaaacaagaaagaaaacagaaacaatttaagta |
1767227 |
T |
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