View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18113_high_9 (Length: 202)

Name: NF18113_high_9
Description: NF18113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18113_high_9
NF18113_high_9
[»] chr3 (9 HSPs)
chr3 (13-184)||(36313753-36313924)
chr3 (106-165)||(36333923-36333982)
chr3 (121-171)||(36336651-36336701)
chr3 (15-56)||(29857007-29857048)
chr3 (115-162)||(30223140-30223187)
chr3 (13-76)||(36321153-36321216)
chr3 (120-174)||(36321266-36321320)
chr3 (116-149)||(36326202-36326235)
chr3 (125-153)||(30227400-30227428)
[»] chr1 (1 HSPs)
chr1 (121-163)||(16955661-16955703)
[»] chr7 (2 HSPs)
chr7 (115-163)||(16644731-16644779)
chr7 (115-163)||(17619092-17619140)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 36313753 - 36313924
Alignment:
Q  13 ataatactcaatattaatgtctttaagatgaccgcaacttcgtttgacaactttgtaaaaaatcctcgtaaaacgtaggtaggataaatcagagatgtag 112  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  36313753 ataatactcaatattaatgtctttaagatgaccacaacttcggttgacaactttgtaaaaaatcctcctaaaacgtaggtaggataaatcacagatgtag 36313852  T
Q  113 cacatgcgaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacgacatgca 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36313853 cacatgcgaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacaacatgca 36313924  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 36333923 - 36333982
Alignment:
Q  106 gatgtagcacatgcgaatagtgcgccacatgagaggatccttgcaaatcttcaaccattg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  36333923 gatgtagcacatgcgaatagtgcgccacatgagaggatccttgcaaatgttccaccattg 36333982  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 36336651 - 36336701
Alignment:
Q  121 aatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgca 171  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  36336651 aatagtgcgccacgtgagaggattcttgcaaatcttcaaccattgagtgca 36336701  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 29857048 - 29857007
Alignment:
Q  15 aatactcaatattaatgtctttaagatgaccgcaacttcgtt 56  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  29857048 aatactcaatattgatgtcttcaagatgaccgcaacttcgtt 29857007  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 30223187 - 30223140
Alignment:
Q  115 catgcgaatagtgcgccacatgagaggatccttgcaaatcttcaacca 162  Q
    |||| |||| ||||||||||||||||||||||||||||| ||| ||||    
T  30223187 catgtgaatggtgcgccacatgagaggatccttgcaaatgttccacca 30223140  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 36321153 - 36321216
Alignment:
Q  13 ataatactcaatattaatgtctttaagatgaccgcaacttcgtttgacaactttgtaaaaaatc 76  Q
    |||||||||||||| ||||| || ||||||||||||||| ||||||| ||| ||| || |||||    
T  36321153 ataatactcaatatcaatgttttcaagatgaccgcaactccgtttgataacattgcaacaaatc 36321216  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 36321266 - 36321320
Alignment:
Q  120 gaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatac 174  Q
    ||||| ||| ||||||||| |||||||||||||| ||||||||||| | ||||||    
T  36321266 gaataatgcaccacatgagtggatccttgcaaatgttcaaccattgtgggcatac 36321320  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 36326202 - 36326235
Alignment:
Q  116 atgcgaatagtgcgccacatgagaggatccttgc 149  Q
    ||||||||||||| ||||||||||||||||||||    
T  36326202 atgcgaatagtgcaccacatgagaggatccttgc 36326235  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 153
Target Start/End: Complemental strand, 30227428 - 30227400
Alignment:
Q  125 gtgcgccacatgagaggatccttgcaaat 153  Q
    |||||||||||||||||||||||||||||    
T  30227428 gtgcgccacatgagaggatccttgcaaat 30227400  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 16955661 - 16955703
Alignment:
Q  121 aatagtgcgccacatgagaggatccttgcaaatcttcaaccat 163  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  16955661 aatagtgcgccacatgagaggatccttgcaaatattccaccat 16955703  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 16644731 - 16644779
Alignment:
Q  115 catgcgaatagtgcgccacatgagaggatccttgcaaatcttcaaccat 163  Q
    |||| |||| ||||||||||||||||| ||||||||||| ||| |||||    
T  16644731 catgtgaatggtgcgccacatgagaggttccttgcaaatgttccaccat 16644779  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 17619092 - 17619140
Alignment:
Q  115 catgcgaatagtgcgccacatgagaggatccttgcaaatcttcaaccat 163  Q
    |||| |||| ||||||||||||||||| ||||||||||| ||| |||||    
T  17619092 catgtgaatggtgcgccacatgagaggttccttgcaaatgttccaccat 17619140  T

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