View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18113_low_1 (Length: 937)
Name: NF18113_low_1
Description: NF18113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18113_low_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 830; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 830; E-Value: 0
Query Start/End: Original strand, 9 - 937
Target Start/End: Complemental strand, 54636873 - 54635940
Alignment:
| Q |
9 |
acatcatcatttcatgctccatatcatcattcaagttaataccctcgatcacaacatcaccttgaatatggcaattgatatcaattttaattagttcgca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54636873 |
acatcatcatttcatgctccatatcatcattcaagttaataccctcgatcacaacatcaccttgaatatggcaattgatatcaattttaattagttcgca |
54636774 |
T |
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| Q |
109 |
ctctccctgcaatacagtagcaaggaattccatgataattacacaattcagatcagttccagatgcatctcactcacaggaacaagtaacttgacaaaca |
208 |
Q |
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| T |
54636773 |
ctctccctgcaatacagtagcaaggaattccatgataattacacaattcagatcagttccagatgcatctcactcacaggaacaagtaacttgacaaaca |
54636674 |
T |
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| Q |
209 |
gtggttttattaaaatcttgtnnnnnnngatatttattgaattttaactggaatggaatcgtcctgaactcgagcatatggtatgtttgtcaaatctgct |
308 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54636673 |
gtggttttattaaaatcttgtaaaaaaagatatttattgaattttaactggaatggactcgtcctgaactcgagcatatggtatgtttgtcaaatctgct |
54636574 |
T |
|
| Q |
309 |
aaatgcnnnnnnnnnn----atcaagcaacaa-tgcaataaacggcaggagagggcctgcgcccagccaacaaagttaatacatcaaatccagccaataa |
403 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54636573 |
aaatgcttttttttctttctatcaagcaacaaatgcaataaacggcaggagagggcctgcgcccagccaacaaagttaatacatcaaatccagccaataa |
54636474 |
T |
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| Q |
404 |
ggcaaaacagcacaaacaaaaattacattaaaagcctatgaacatagattatatgaacttatcttgccttcttcatttaagtattttcccactgtttttc |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
54636473 |
ggcaaaacagcacaaacaaaaattacattaaaagcctatgaacatagattatatgaacttatcttgccttcttcatttaaatattttcccactctttttc |
54636374 |
T |
|
| Q |
504 |
atttctcatttctggtatattgatgcctaatatgcttcgatcaagtctaagtaatcttaatgacgtttcggtttttacatgctcttcatgagtataggtg |
603 |
Q |
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| T |
54636373 |
atttctcatttctggtatattgatgccgaatatgcttcgatcaagtctaagtaatcttaatgacgtttcggtttttacatgctcttcatgagtataggtg |
54636274 |
T |
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| Q |
604 |
catgcatatatgcccaacatttataatccaaggcgcaagctaccaaaatgtaattagttattctggctctacttaataagcaggaaaacaagtttgagct |
703 |
Q |
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| T |
54636273 |
catgcatatatgcccaacatttataatccaaggcacaagctaccaaaatgtaattagttattctggctctacttaataagcaggaaaacaagtttgagct |
54636174 |
T |
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| Q |
704 |
gcaaatgaatggcctatgaactatttgaagtttaaactatgagaaaatgtgcagcatatttcgttaagtactcgaaatggctgaaaataaaccagcacta |
803 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
54636173 |
gcaaatgaatggcctatgaactatttgaagtttaaactatgagaaaatgtgcagcatatttcattaagtactcgaaatggctgaaaataaaccagcacta |
54636074 |
T |
|
| Q |
804 |
ttgcaggaaggtaaaataagagattttccccccttttcatatcagaacctgtttgctacattttatgaggttccaagtcatctcaggaacatagcaactc |
903 |
Q |
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| T |
54636073 |
ttgcaggaaggtaaaataagagattttccccccttttcatatcagaacctgtttgctacattttatgaggttccaagtcatctcaggaacatagcaactc |
54635974 |
T |
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| Q |
904 |
gcagattataacaattgtttgccacagtaacacc |
937 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
54635973 |
gcagattttaacaattgtttgccacagtaacacc |
54635940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 863 - 937
Target Start/End: Complemental strand, 54635932 - 54635858
Alignment:
| Q |
863 |
attttatgaggttccaagtcatctcaggaacatagcaactcgcagattataacaattgtttgccacagtaacacc |
937 |
Q |
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| T |
54635932 |
attttatgaggttccaagtcatctcaggaacatagcaactcgcagattttaacaattgtttgccacggtaacacc |
54635858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 325 - 376
Target Start/End: Complemental strand, 1963746 - 1963694
Alignment:
| Q |
325 |
atcaagcaacaa-tgcaataaacggcaggagagggcctgcgcccagccaacaa |
376 |
Q |
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| T |
1963746 |
atcaagcaacaaatgcaataaacggcaggagagggcctgcgcccagccaacaa |
1963694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 25460093 - 25460126
Alignment:
| Q |
343 |
aaacggcaggagagggcctgcgcccagccaacaa |
376 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
25460093 |
aaacggcaggagagggcctgcgcccagccaacaa |
25460126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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