View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18113_low_5 (Length: 403)
Name: NF18113_low_5
Description: NF18113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18113_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 32613560 - 32613187
Alignment:
| Q |
11 |
cacagatattgaacacgcgcatgatggattcacaatccactacaatagagactttgtaactgtctcctagtgacaaagtggtctgtgtgcatattttgct |
110 |
Q |
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| T |
32613560 |
cacagatattgaacacgcgcatgatggattcacaatccactacaatagagactttgtaactgtctactagtgacaaagtggtttgtgtgcatattttgct |
32613461 |
T |
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| Q |
111 |
gagattaggataaatatcacattctgccacaacctgctaaaaagtagaaatttaatagatgtcaagctgcacctaagtaccttgctgagatgccttaagt |
210 |
Q |
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| T |
32613460 |
gagattaggataaatatcacattctgccacaacctgctaaaaagtagaaatttaatagatgtcaagctgcacctaagtaccttgctgagatgccttaagt |
32613361 |
T |
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| Q |
211 |
gaaccctccattcttggttctatcaaaaggtaagtttgtagaaaagaaaagctataaaatgaagacatacatgaagtcgttggtcttataacgaactaaa |
310 |
Q |
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| T |
32613360 |
gaaccctccattcttggttctatcaaaaggtaagtttgtagaaaagaaaagctgtaaaatgaagacatacatgaagtcgttggtcttataacgaactaaa |
32613261 |
T |
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| Q |
311 |
tgaaagggaggcgaatcagcattgtatcccaaaatttaagtttgaatgcatacatagtgcaaataaggtatctg |
384 |
Q |
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| T |
32613260 |
tgaaagggaggcgaatcagcattgtatcccaaaatttaagtttgaatgcatacatagtgcaaataaggtatctg |
32613187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 187 - 360
Target Start/End: Complemental strand, 32576907 - 32576732
Alignment:
| Q |
187 |
gtaccttgctgagatgccttaagtgaaccctccattcttggttctatcaaaaggtaagtttgtagaaaagaaaagctataaaatgaagacata---catg |
283 |
Q |
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| T |
32576907 |
gtaccttgctgaaatgcctaaagtgaaccctccattcttggttctatcaaaagataagtttgtagaaaagaaaatctgtaaaacacagacaaaatgcatg |
32576808 |
T |
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| Q |
284 |
aagtcgttggtcttataacgaactaaatgaaagggaggcgaatcagcattgtatcccaaaatttaagtttgaatgca |
360 |
Q |
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| T |
32576807 |
aagttgttggtctt-taacgaactaaatgaaagggaggcgaatcagcattgtatcccaaaatttaagtttgaatgca |
32576732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 32577070 - 32576963
Alignment:
| Q |
11 |
cacagatattgaacacgcgcatgatggattcacaatccactacaatagagactttgtaactgtctcctagtgacaaagtggtctgtgtgcatattttgct |
110 |
Q |
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|||||| ||||||| || |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |
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| T |
32577070 |
cacagaaattgaactcgagcatgatggatttgcaatccactacaatagagactttgtaactgtctactagtgacaaagtggtttgtgtgcatatcttgct |
32576971 |
T |
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| Q |
111 |
gagattag |
118 |
Q |
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| T |
32576970 |
gaaattag |
32576963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 32571678 - 32571596
Alignment:
| Q |
81 |
tgacaaagtgg-tctgtgtgcatattttgctgagattaggataaatatcacattctgccacaacctgctaaaaagtagaaatt |
162 |
Q |
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||||||||||| | |||| |||||| ||| ||||||||| || |||||||||||| ||| ||||||||||| ||||||||| |
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| T |
32571678 |
tgacaaagtggctgtgtgggcatatcttgttgagattagaatgaatatcacattccatcaccacctgctaaaaggtagaaatt |
32571596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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