View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18113_low_7 (Length: 383)
Name: NF18113_low_7
Description: NF18113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18113_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 54479601 - 54479967
Alignment:
| Q |
1 |
ttgattatgatgcttgatcactgactcatttcatgcatatcatctattatattttatattagtcttaaggtttgttgccatttattttcttatttcgttc |
100 |
Q |
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| T |
54479601 |
ttgattatgatgcttgatcactgactcatttcatgcatatcatctattatattttatattagtcttaaggtttgttgccatttattttcttatttcgttc |
54479700 |
T |
|
| Q |
101 |
atacttcgtcttatacatgcaaatgtataatctcctctatattcaccaaaaacaatacgtacttgtttaatctcctctatacaagcaatgattctaatga |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54479701 |
atactttgtcttatacatgcaaatgtataatctcctctatattcaccaaaaacaatacgtacttgtttaatctcctctatacaagcaatgattctaatga |
54479800 |
T |
|
| Q |
201 |
aagcatgtttttgttaccgcattgatcggtgaatcccattcattgactagtttgtacaaattgtgtttacttttatttattatcttttgtatgaatcgtt |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54479801 |
aagcatgtttttgttaccgcattgatcagtgaatcccattcattgactagtttgtacaaattgtgtttacttttatttattatcttttgtatgaatcgtt |
54479900 |
T |
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| Q |
301 |
gattaggatacacataaggaaaaatatgtgatgaaattttattttgaccggacttgacacgatcaaa |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54479901 |
gattaggatacacataaggaaaaatatgtgatgaaattttattttgaccggacttgacacgatcaaa |
54479967 |
T |
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