View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18113_low_9 (Length: 285)
Name: NF18113_low_9
Description: NF18113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18113_low_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 49082764 - 49082460
Alignment:
| Q |
1 |
ctccacacatgctgccacaggttcctaagctcattcctgcgaactggtttaatgagaaaatcgacagccccgttgagcatgaatttgaatacagtgctaa |
100 |
Q |
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| T |
49082764 |
ctccacacatgctgccacaagttcctaagctcattcctgcgaactggtttaatgagaaaatcgacagccccgttgagcatgaatttgaatacagtgctaa |
49082665 |
T |
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| Q |
101 |
ctgaatcttgagaagacatcactgcaaattacatttacatacatgatgtaatgaggaaacatgaagaaggaagttatttaattagttcagacataa---- |
196 |
Q |
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| T |
49082664 |
ctgaatcttgagaagacatcactgcaaattacatttacatacatgatgtaatgaggaaacatgaagaaggaagttatttaattagttcagacataacata |
49082565 |
T |
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| Q |
197 |
----------------catacttatgagaggaatgtttttgcaatagtgatggtccatgatttgggtaagtaatgaaaaaccagagattgatggtagatc |
280 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49082564 |
acataacataacataacatacttatgagaggaatgtttttgcaattgtgatggtccatgatttgggtaagtaatgaaaaaccagagattgatgggagatc |
49082465 |
T |
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| Q |
281 |
gactt |
285 |
Q |
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||||| |
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| T |
49082464 |
gactt |
49082460 |
T |
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