View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18114_high_1 (Length: 771)
Name: NF18114_high_1
Description: NF18114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18114_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 496; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Original strand, 5718308 - 5718853
Alignment:
| Q |
1 |
ttatgtgattttaccttcttctctatgacccctccctcaagaaaaccggctattgttttgcttagaaatttgtttcgtttgatttgaatatcttagataa |
100 |
Q |
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| T |
5718308 |
ttatgtgattttaccttcttctctatgacccctccctcaagaaaaccggctattgttttgcttagaaatttgtttcgtttgatttgaatatcatagataa |
5718407 |
T |
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| Q |
101 |
tgtttgaattcaagcacgtttaactacgagaagttttgataagatcaatcacaataaaagaatgatcacaacattcaacagag--ttgaatgtgaaagat |
198 |
Q |
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| T |
5718408 |
tgtttgaattcaagcacgtttaactgcgagaagttttgataagatcaatcacaataaa-gaatgatcacaacattcaacagagagttgaatgtgaaagat |
5718506 |
T |
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| Q |
199 |
ggatttctaagacttatgattccaatatttgaaagaatgtttggagaaatttcttttgggttgagaggtatgagtacaaatcaacaaattcaaattttga |
298 |
Q |
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| T |
5718507 |
gaatctctaagacttatgattccaatatttgaaagaatgtttggagaaagttcttttgggttgagaggtatgagtacaaatcaacaaattcaaattttga |
5718606 |
T |
|
| Q |
299 |
agatgcaaggttacaaaaatcccaagcatcatatacaatagaatgaatgaacattttccatcattttttacttctactatcaacacgtttcttctcttgt |
398 |
Q |
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| T |
5718607 |
agatgcaaggttacaaaaatcccaagcatcatatacaatagaatgaatgaacatttttcatcattttttacttctactatcaacacgtttcttctcttgt |
5718706 |
T |
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| Q |
399 |
ttgtttccattcttcttagaacaacttttgcttccatgatcttgcttatctttcttcaaccccgactttccttgtccgcgaccataatttgtttgatgtt |
498 |
Q |
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| T |
5718707 |
ttgtttccattcttcttagaacaactcttgcttccatgatcttgtttatctttcttcaaccccgactttccttgtccgcgaccataatttgtttgatgtt |
5718806 |
T |
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| Q |
499 |
gataattcattggaccggacgaagcatccgaagccatcgaatcatca |
545 |
Q |
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| T |
5718807 |
gataattcattggaccggacgaagcatccgaagccatcgaatcatca |
5718853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 586 - 737
Target Start/End: Original strand, 5718894 - 5719045
Alignment:
| Q |
586 |
caccgtagatttcatgtcgatgatatccatcgttttcattgctgcatctagcatcatcttcttgtataggagaatcaatatacatagtccaaccagattc |
685 |
Q |
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| T |
5718894 |
caccgtagatttcatgacgatgatatccatcattttcattgctgcatctagcatcatcttcttgcataggagaatcaatatacatagtccaaccagattc |
5718993 |
T |
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| Q |
686 |
actactgctacatccttctgctgcaccccagatttgtttaaaagaatccatc |
737 |
Q |
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| T |
5718994 |
actactgctacatccttctgctgcaccccagatttgtttaaaagaatccatc |
5719045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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